RNA–Protein interactions for RNA: ENST00000476387.1

COL1A1-205, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 600 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-205ENST00000476387 PCF11O94913 1555 aaKnown RBP26.25■■□□□ 1.79
COL1A1-205ENST00000476387 POGZQ7Z3K3 1410 aa26.25■■□□□ 1.79
COL1A1-205ENST00000476387 SCAPERQ9BY12 1400 aa26.25■■□□□ 1.79
COL1A1-205ENST00000476387 ARID4BQ4LE39 1312 aaPredicted RBP26.25■■□□□ 1.79
COL1A1-205ENST00000476387 ZFYVE16Q7Z3T8 1539 aa26.24■■□□□ 1.79
COL1A1-205ENST00000476387 PTPRMP28827 1452 aa26.23■■□□□ 1.79
COL1A1-205ENST00000476387 FYCO1Q9BQS8 1478 aa26.2■■□□□ 1.78
COL1A1-205ENST00000476387 YEATS2Q9ULM3 1422 aa26.19■■□□□ 1.78
COL1A1-205ENST00000476387 ARHGAP5Q13017 1502 aa26.17■■□□□ 1.78
COL1A1-205ENST00000476387 MADDQ8WXG6 1647 aa26.16■■□□□ 1.78
COL1A1-205ENST00000476387 ZNF518AQ6AHZ1 1483 aa26.13■■□□□ 1.77
COL1A1-205ENST00000476387 ATP10AO60312 1499 aa26.1■■□□□ 1.77
COL1A1-205ENST00000476387 PREX2Q70Z35 1606 aa26.09■■□□□ 1.77
COL1A1-205ENST00000476387 CDC42BPBQ9Y5S2 1711 aa26.08■■□□□ 1.77
COL1A1-205ENST00000476387 KDM5CP41229 1560 aa26.08■■□□□ 1.77
COL1A1-205ENST00000476387 SIGLEC1Q9BZZ2 1709 aa26.08■■□□□ 1.76
COL1A1-205ENST00000476387 C9orf84Q5VXU9 1444 aa26.07■■□□□ 1.76
COL1A1-205ENST00000476387 RIMS1Q86UR5 1692 aaKnown RBP26.06■■□□□ 1.76
COL1A1-205ENST00000476387 AFAP1Q8N556 730 aa26.04■■□□□ 1.76
COL1A1-205ENST00000476387 CEP162Q5TB80 1403 aa26.04■■□□□ 1.76
COL1A1-205ENST00000476387 ABCC1P33527 1531 aa26.02■■□□□ 1.76
COL1A1-205ENST00000476387 CDC42BPAQ5VT25 1732 aa26■■□□□ 1.75
COL1A1-205ENST00000476387 MLH3Q9UHC1 1453 aa25.99■■□□□ 1.75
COL1A1-205ENST00000476387 ARHGEF12Q9NZN5 1544 aa25.98■■□□□ 1.75
COL1A1-205ENST00000476387 MLECQ14165 292 aa25.97■■□□□ 1.75
COL1A1-205ENST00000476387 TRAPPC8Q9Y2L5 1435 aa25.97■■□□□ 1.75
COL1A1-205ENST00000476387 ITSN2Q9NZM3 1697 aa25.96■■□□□ 1.75
COL1A1-205ENST00000476387 REREQ9P2R6 1566 aa25.95■■□□□ 1.75
COL1A1-205ENST00000476387 FER1L4A9Z1Z3 1794 aa25.95■■□□□ 1.75
COL1A1-205ENST00000476387 LMTK3Q96Q04 1460 aa25.95■■□□□ 1.74
COL1A1-205ENST00000476387 DIP2CQ9Y2E4 1556 aa25.95■■□□□ 1.74
COL1A1-205ENST00000476387 GPATCH8Q9UKJ3 1502 aaKnown RBP25.94■■□□□ 1.74
COL1A1-205ENST00000476387 MYT1LQ9UL68 1186 aa25.94■■□□□ 1.74
COL1A1-205ENST00000476387 MTUS2Q5JR59 1369 aa25.92■■□□□ 1.74
COL1A1-205ENST00000476387 ABCA6Q8N139 1617 aa25.91■■□□□ 1.74
COL1A1-205ENST00000476387 LOC105371045A0A1W2PR82 267 aa25.89■■□□□ 1.74
COL1A1-205ENST00000476387 SAMD9LQ8IVG5 1584 aa25.89■■□□□ 1.73
COL1A1-205ENST00000476387 CCNB3Q8WWL7 1395 aa25.88■■□□□ 1.73
COL1A1-205ENST00000476387 ZNF777Q9ULD5 760 aaPredicted RBP25.87■■□□□ 1.73
COL1A1-205ENST00000476387 AGLP35573 1532 aa25.87■■□□□ 1.73
COL1A1-205ENST00000476387 PLEKHH2Q8IVE3 1493 aa25.86■■□□□ 1.73
COL1A1-205ENST00000476387 ILDR1Q86SU0 546 aaPredicted RBP25.86■■□□□ 1.73
COL1A1-205ENST00000476387 CFDP1Q9UEE9 299 aaPredicted RBP25.86■■□□□ 1.73
COL1A1-205ENST00000476387 KIAA1107Q9UPP5 1409 aa25.86■■□□□ 1.73
COL1A1-205ENST00000476387 SYCP2Q9BX26 1530 aa25.85■■□□□ 1.73
COL1A1-205ENST00000476387 KIDINS220Q9ULH0 1771 aa25.84■■□□□ 1.73
COL1A1-205ENST00000476387 EHBP1L1Q8N3D4 1523 aa25.84■■□□□ 1.73
COL1A1-205ENST00000476387 PLPPR3Q6T4P5 718 aa25.84■■□□□ 1.73
COL1A1-205ENST00000476387 SPAG9O60271 1321 aaKnown RBP25.8■■□□□ 1.72
COL1A1-205ENST00000476387 HNRNPMP52272 730 aaKnown RBP eCLIP25.79■■□□□ 1.72
COL1A1-205ENST00000476387 TIAM1Q13009 1591 aa25.78■■□□□ 1.72
COL1A1-205ENST00000476387 HSPA2P54652 639 aa25.76■■□□□ 1.71
COL1A1-205ENST00000476387 ATP7AQ04656 1500 aa25.74■■□□□ 1.71
COL1A1-205ENST00000476387 CEBPAP49715 358 aaPredicted RBP25.74■■□□□ 1.71
COL1A1-205ENST00000476387 VPS8Q8N3P4 1428 aa25.73■■□□□ 1.71
COL1A1-205ENST00000476387 PREX1Q8TCU6 1659 aa25.73■■□□□ 1.71
COL1A1-205ENST00000476387 INO80Q9ULG1 1556 aaPredicted RBP25.73■■□□□ 1.71
COL1A1-205ENST00000476387 ESF1Q9H501 851 aaKnown RBP25.72■■□□□ 1.71
COL1A1-205ENST00000476387 CNTLNQ9NXG0 1405 aa25.71■■□□□ 1.71
COL1A1-205ENST00000476387 SETD1BQ9UPS6 1966 aaKnown RBP25.71■■□□□ 1.71
COL1A1-205ENST00000476387 MBD5Q9P267 1494 aa25.68■■□□□ 1.7
COL1A1-205ENST00000476387 ZNF644Q9H582 1327 aaPredicted RBP25.67■■□□□ 1.7
COL1A1-205ENST00000476387 NCOA2Q15596 1464 aa25.67■■□□□ 1.7
COL1A1-205ENST00000476387 PLXNC1O60486 1568 aa25.67■■□□□ 1.7
COL1A1-205ENST00000476387 SUPT6HQ7KZ85 1726 aaKnown RBP25.67■■□□□ 1.7
COL1A1-205ENST00000476387 C3P01024 1663 aa25.67■■□□□ 1.7
COL1A1-205ENST00000476387 A2MP01023 1474 aa25.66■■□□□ 1.7
COL1A1-205ENST00000476387 UHRF1BP1Q6BDS2 1440 aa25.66■■□□□ 1.7
COL1A1-205ENST00000476387 RTEL1-TNFRSF6BF6WH68 1400 aa25.63■■□□□ 1.69
COL1A1-205ENST00000476387 FBXO41Q8TF61 875 aa25.61■■□□□ 1.69
COL1A1-205ENST00000476387 MROH2AA6NES4 1674 aa25.61■■□□□ 1.69
COL1A1-205ENST00000476387 ADGBQ8N7X0 1667 aa25.61■■□□□ 1.69
COL1A1-205ENST00000476387 LRRC9Q6ZRR7 1453 aa25.59■■□□□ 1.69
COL1A1-205ENST00000476387 RSPH4AQ5TD94 716 aa25.58■■□□□ 1.69
COL1A1-205ENST00000476387 CAMSAP2Q08AD1 1489 aa25.58■■□□□ 1.69
COL1A1-205ENST00000476387 MAP3K1Q13233 1512 aa25.58■■□□□ 1.68
COL1A1-205ENST00000476387 NPATQ14207 1427 aa25.57■■□□□ 1.68
COL1A1-205ENST00000476387 CCDC141Q6ZP82 1450 aa25.57■■□□□ 1.68
COL1A1-205ENST00000476387 PPP6R1Q9UPN7 881 aa25.56■■□□□ 1.68
COL1A1-205ENST00000476387 ZMYM3Q14202 1370 aa25.56■■□□□ 1.68
COL1A1-205ENST00000476387 DMRT2Q9Y5R5 561 aa25.54■■□□□ 1.68
COL1A1-205ENST00000476387 DHX29Q7Z478 1369 aaKnown RBP25.53■■□□□ 1.68
COL1A1-205ENST00000476387 GGT6Q6P531 493 aa25.51■■□□□ 1.67
COL1A1-205ENST00000476387 ARHGEF5Q12774 1597 aa25.51■■□□□ 1.67
COL1A1-205ENST00000476387 STRCQ7RTU9 1775 aa25.51■■□□□ 1.67
COL1A1-205ENST00000476387 CLTCQ00610 1675 aaKnown RBP25.5■■□□□ 1.67
COL1A1-205ENST00000476387 KANK4Q5T7N3 995 aaPredicted RBP25.45■■□□□ 1.66
COL1A1-205ENST00000476387 TSPY4P0CV99 314 aa25.44■■□□□ 1.66
COL1A1-205ENST00000476387 TSPY10P0CW01 314 aa25.44■■□□□ 1.66
COL1A1-205ENST00000476387 APLP2Q06481 763 aa25.44■■□□□ 1.66
COL1A1-205ENST00000476387 PTPRTO14522 1441 aa25.44■■□□□ 1.66
COL1A1-205ENST00000476387 PTPRKQ15262 1439 aa25.44■■□□□ 1.66
COL1A1-205ENST00000476387 CERKQ8TCT0 537 aa25.43■■□□□ 1.66
COL1A1-205ENST00000476387 NCOA1Q15788 1441 aa25.43■■□□□ 1.66
COL1A1-205ENST00000476387 MIA2Q96PC5 1412 aa25.43■■□□□ 1.66
COL1A1-205ENST00000476387 MYOM3Q5VTT5 1437 aa25.42■■□□□ 1.66
COL1A1-205ENST00000476387 FAM135AQ9P2D6 1515 aa25.42■■□□□ 1.66
COL1A1-205ENST00000476387 KIF3BO15066 747 aa25.4■■□□□ 1.66
COL1A1-205ENST00000476387 MAST1Q9Y2H9 1570 aa25.38■■□□□ 1.65
COL1A1-205ENST00000476387 ZNF142P52746 1687 aaPredicted RBP25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms