RNA–Protein interactions for RNA: ENST00000476387.1

COL1A1-205, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 600 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-205ENST00000476387 NISCHQ9Y2I1 1504 aa40.15■■■■■ 4.02
COL1A1-205ENST00000476387 CCDC180Q9P1Z9 1646 aa35.96■■■■□ 3.35
COL1A1-205ENST00000476387 ABCC9O60706 1549 aa35.69■■■■□ 3.3
COL1A1-205ENST00000476387 RB1CC1Q8TDY2 1594 aa34.12■■■■□ 3.05
COL1A1-205ENST00000476387 NACADO15069 1562 aa33.96■■■■□ 3.03
COL1A1-205ENST00000476387 DCAF8L2P0C7V8 631 aa33.7■■■□□ 2.99
COL1A1-205ENST00000476387 MYO15BQ96JP2 1530 aa33.61■■■□□ 2.97
COL1A1-205ENST00000476387 ZCCHC6Q5VYS8 1495 aaKnown RBP33.32■■■□□ 2.92
COL1A1-205ENST00000476387 DNAJC5BQ9UF47 199 aa33.29■■■□□ 2.92
COL1A1-205ENST00000476387 UNC13AQ9UPW8 1703 aa33.28■■■□□ 2.92
COL1A1-205ENST00000476387 PABPN1Q86U42 306 aaKnown RBP eCLIP33.24■■■□□ 2.91
COL1A1-205ENST00000476387 DCAF1Q9Y4B6 1507 aa33.23■■■□□ 2.91
COL1A1-205ENST00000476387 BICRAQ9NZM4 1560 aa33.09■■■□□ 2.89
COL1A1-205ENST00000476387 SHROOM4Q9ULL8 1493 aa32.79■■■□□ 2.84
COL1A1-205ENST00000476387 SCRIBQ14160 1630 aa32.71■■■□□ 2.83
COL1A1-205ENST00000476387 CC2D2AQ9P2K1 1620 aa32.28■■■□□ 2.76
COL1A1-205ENST00000476387 EIF4G1Q04637 1599 aaKnown RBP32.28■■■□□ 2.76
COL1A1-205ENST00000476387 CECR2Q9BXF3 1484 aa32.16■■■□□ 2.74
COL1A1-205ENST00000476387 NCAPD3P42695 1498 aa31.35■■■□□ 2.61
COL1A1-205ENST00000476387 SMARCA4P51532 1647 aa31.26■■■□□ 2.59
COL1A1-205ENST00000476387 ATAD2BQ9ULI0 1458 aa31.26■■■□□ 2.59
COL1A1-205ENST00000476387 SMARCA2P51531 1590 aa31.2■■■□□ 2.58
COL1A1-205ENST00000476387 BAZ1AQ9NRL2 1556 aaPredicted RBP31.17■■■□□ 2.58
COL1A1-205ENST00000476387 HMGXB3Q12766 1538 aa31.14■■■□□ 2.57
COL1A1-205ENST00000476387 PEG3Q9GZU2 1588 aa31■■■□□ 2.55
COL1A1-205ENST00000476387 BAZ1BQ9UIG0 1483 aaKnown RBP30.96■■■□□ 2.55
COL1A1-205ENST00000476387 MROH2BQ7Z745 1585 aa30.91■■■□□ 2.54
COL1A1-205ENST00000476387 ERCC6Q03468 1493 aa30.83■■■□□ 2.53
COL1A1-205ENST00000476387 CUX2O14529 1486 aa30.76■■■□□ 2.52
COL1A1-205ENST00000476387 NESP48681 1621 aa30.71■■■□□ 2.51
COL1A1-205ENST00000476387 LAMC3Q9Y6N6 1575 aa30.59■■■□□ 2.49
COL1A1-205ENST00000476387 WIZO95785 1651 aa30.52■■■□□ 2.48
COL1A1-205ENST00000476387 DNAJC5Q9H3Z4 198 aa30.49■■■□□ 2.47
COL1A1-205ENST00000476387 PDS5BQ9NTI5 1447 aa30.43■■■□□ 2.46
COL1A1-205ENST00000476387 THOC2Q8NI27 1593 aaKnown RBP30.4■■■□□ 2.46
COL1A1-205ENST00000476387 CADPSQ9ULU8 1353 aa30.4■■■□□ 2.46
COL1A1-205ENST00000476387 RSF1Q96T23 1441 aaPredicted RBP30.36■■■□□ 2.45
COL1A1-205ENST00000476387 KIF21AQ7Z4S6 1674 aa30.32■■■□□ 2.44
COL1A1-205ENST00000476387 TOP2AP11388 1531 aaKnown RBP30.21■■■□□ 2.43
COL1A1-205ENST00000476387 MRC2Q9UBG0 1479 aa30.13■■■□□ 2.41
COL1A1-205ENST00000476387 CFTRP13569 1480 aa30.09■■■□□ 2.41
COL1A1-205ENST00000476387 WDR62O43379 1518 aa30.06■■■□□ 2.4
COL1A1-205ENST00000476387 CEP164Q9UPV0 1460 aa30.05■■■□□ 2.4
COL1A1-205ENST00000476387 FANCD2Q9BXW9 1451 aa30.03■■■□□ 2.4
COL1A1-205ENST00000476387 CCDC88BA6NC98 1476 aa29.84■■■□□ 2.37
COL1A1-205ENST00000476387 PRDM2Q13029 1718 aa29.77■■■□□ 2.36
COL1A1-205ENST00000476387 URB2Q14146 1524 aaKnown RBP29.76■■■□□ 2.35
COL1A1-205ENST00000476387 ABCC8Q09428 1581 aa29.48■■■□□ 2.31
COL1A1-205ENST00000476387 TOPBP1Q92547 1522 aa29.48■■■□□ 2.31
COL1A1-205ENST00000476387 IFT140Q96RY7 1462 aa29.46■■■□□ 2.31
COL1A1-205ENST00000476387 DNMBPQ6XZF7 1577 aa29.4■■■□□ 2.3
COL1A1-205ENST00000476387 OSCARQ8IYS5 282 aa29.36■■■□□ 2.29
COL1A1-205ENST00000476387 ZNF608Q9ULD9 1512 aaPredicted RBP29.34■■■□□ 2.29
COL1A1-205ENST00000476387 EIF4G3O43432 1585 aaKnown RBP29.2■■■□□ 2.26
COL1A1-205ENST00000476387 TARBP1Q13395 1621 aaKnown RBP29.2■■■□□ 2.26
COL1A1-205ENST00000476387 POLA1P09884 1462 aaPredicted RBP29.19■■■□□ 2.26
COL1A1-205ENST00000476387 TRIM41Q8WV44 630 aa29.15■■■□□ 2.26
COL1A1-205ENST00000476387 SUPT5HO00267 1087 aaKnown RBP29.12■■■□□ 2.25
COL1A1-205ENST00000476387 AQRO60306 1485 aaKnown RBP eCLIP29.1■■■□□ 2.25
COL1A1-205ENST00000476387 SOGA1O94964 1423 aa29.06■■■□□ 2.24
COL1A1-205ENST00000476387 RAD54L2Q9Y4B4 1467 aa29.04■■■□□ 2.24
COL1A1-205ENST00000476387 CUX1P39880 1505 aa29.04■■■□□ 2.24
COL1A1-205ENST00000476387 FGD5Q6ZNL6 1462 aa29.03■■■□□ 2.24
COL1A1-205ENST00000476387 WDR97A6NE52 1622 aa28.98■■■□□ 2.23
COL1A1-205ENST00000476387 TDRD9Q8NDG6 1382 aaKnown RBP28.96■■■□□ 2.23
COL1A1-205ENST00000476387 CHD1O14646 1710 aa28.92■■■□□ 2.22
COL1A1-205ENST00000476387 RIMBP3CA6NJZ7 1639 aa28.92■■■□□ 2.22
COL1A1-205ENST00000476387 RIMBP3BA6NNM3 1639 aa28.92■■■□□ 2.22
COL1A1-205ENST00000476387 RIMBP3Q9UFD9 1639 aa28.92■■■□□ 2.22
COL1A1-205ENST00000476387 ARHGEF11O15085 1522 aa28.88■■■□□ 2.21
COL1A1-205ENST00000476387 FBLN2P98095 1184 aa28.85■■■□□ 2.21
COL1A1-205ENST00000476387 SNAPC4Q5SXM2 1469 aa28.83■■■□□ 2.21
COL1A1-205ENST00000476387 GRIN2BQ13224 1484 aa28.81■■■□□ 2.2
COL1A1-205ENST00000476387 MAGI1Q96QZ7 1491 aaPredicted RBP28.8■■■□□ 2.2
COL1A1-205ENST00000476387 ABCA10Q8WWZ4 1543 aa28.74■■■□□ 2.19
COL1A1-205ENST00000476387 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
COL1A1-205ENST00000476387 CHMP7Q8WUX9 453 aaPredicted RBP28.71■■■□□ 2.19
COL1A1-205ENST00000476387 SYNJ2O15056 1496 aa28.69■■■□□ 2.18
COL1A1-205ENST00000476387 WRNQ14191 1432 aaPredicted RBP eCLIP28.67■■■□□ 2.18
COL1A1-205ENST00000476387 ABCA5Q8WWZ7 1642 aa28.66■■■□□ 2.18
COL1A1-205ENST00000476387 PBRM1Q86U86 1689 aa28.66■■■□□ 2.18
COL1A1-205ENST00000476387 SYNJ1O43426 1573 aa28.65■■■□□ 2.18
COL1A1-205ENST00000476387 TOP2BQ02880 1626 aa28.65■■■□□ 2.18
COL1A1-205ENST00000476387 CLASP1Q7Z460 1538 aa28.64■■■□□ 2.18
COL1A1-205ENST00000476387 BIVM-ERCC5R4GMW8 1640 aa28.63■■■□□ 2.17
COL1A1-205ENST00000476387 CYB5RLQ6IPT4 315 aa28.62■■■□□ 2.17
COL1A1-205ENST00000476387 ARAP1Q96P48 1450 aa28.6■■■□□ 2.17
COL1A1-205ENST00000476387 ADAMTS12P58397 1594 aa28.43■■■□□ 2.14
COL1A1-205ENST00000476387 GRIN2AQ12879 1464 aa28.43■■■□□ 2.14
COL1A1-205ENST00000476387 ERICH3Q5RHP9 1530 aa28.4■■■□□ 2.14
COL1A1-205ENST00000476387 FHAD1B1AJZ9 1412 aa28.39■■■□□ 2.14
COL1A1-205ENST00000476387 NUP160Q12769 1436 aa28.35■■■□□ 2.13
COL1A1-205ENST00000476387 CEP170Q5SW79 1584 aa28.29■■■□□ 2.12
COL1A1-205ENST00000476387 TRHP20396 242 aaPredicted RBP28.22■■■□□ 2.11
COL1A1-205ENST00000476387 SHROOM2Q13796 1616 aa28.18■■■□□ 2.1
COL1A1-205ENST00000476387 ERCC6L2Q5T890 1561 aa28.16■■■□□ 2.1
COL1A1-205ENST00000476387 KIF27Q86VH2 1401 aa28.1■■■□□ 2.09
COL1A1-205ENST00000476387 IGF1RP08069 1367 aa28.06■■■□□ 2.08
COL1A1-205ENST00000476387 JPH4Q96JJ6 628 aa28.03■■■□□ 2.08
COL1A1-205ENST00000476387 PRG4Q92954 1404 aaPredicted RBP28.02■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms