RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 ZFYVE16Q7Z3T8 1539 aa24.39■■□□□ 1.49
VARS-223ENST00000474643 POGZQ7Z3K3 1410 aa24.38■■□□□ 1.49
VARS-223ENST00000474643 ZMYM4Q5VZL5 1548 aa24.37■■□□□ 1.49
VARS-223ENST00000474643 MAGI2Q86UL8 1455 aa24.36■■□□□ 1.49
VARS-223ENST00000474643 BCORL1Q5H9F3 1711 aa24.35■■□□□ 1.49
VARS-223ENST00000474643 FYCO1Q9BQS8 1478 aa24.35■■□□□ 1.49
VARS-223ENST00000474643 LRRIQ1Q96JM4 1722 aa24.35■■□□□ 1.49
VARS-223ENST00000474643 ADAMTSL3P82987 1691 aa24.34■■□□□ 1.49
VARS-223ENST00000474643 PTPRMP28827 1452 aa24.34■■□□□ 1.49
VARS-223ENST00000474643 MADDQ8WXG6 1647 aa24.32■■□□□ 1.48
VARS-223ENST00000474643 YEATS2Q9ULM3 1422 aa24.32■■□□□ 1.48
VARS-223ENST00000474643 PLPPR3Q6T4P5 718 aa24.3■■□□□ 1.48
VARS-223ENST00000474643 MLECQ14165 292 aa24.29■■□□□ 1.48
VARS-223ENST00000474643 ZNF518AQ6AHZ1 1483 aa24.29■■□□□ 1.48
VARS-223ENST00000474643 RIMS1Q86UR5 1692 aaKnown RBP24.26■■□□□ 1.47
VARS-223ENST00000474643 PREX2Q70Z35 1606 aa24.24■■□□□ 1.47
VARS-223ENST00000474643 ATP10AO60312 1499 aa24.22■■□□□ 1.47
VARS-223ENST00000474643 C9orf84Q5VXU9 1444 aa24.22■■□□□ 1.47
VARS-223ENST00000474643 AFAP1Q8N556 730 aa24.21■■□□□ 1.47
VARS-223ENST00000474643 ZNF777Q9ULD5 760 aaPredicted RBP24.2■■□□□ 1.46
VARS-223ENST00000474643 CDC42BPBQ9Y5S2 1711 aa24.2■■□□□ 1.46
VARS-223ENST00000474643 MTUS2Q5JR59 1369 aa24.18■■□□□ 1.46
VARS-223ENST00000474643 FER1L4A9Z1Z3 1794 aa24.16■■□□□ 1.46
VARS-223ENST00000474643 KDM5CP41229 1560 aa24.16■■□□□ 1.46
VARS-223ENST00000474643 ABCC1P33527 1531 aa24.15■■□□□ 1.46
VARS-223ENST00000474643 CEP162Q5TB80 1403 aa24.15■■□□□ 1.46
VARS-223ENST00000474643 CDC42BPAQ5VT25 1732 aa24.13■■□□□ 1.45
VARS-223ENST00000474643 SIGLEC1Q9BZZ2 1709 aa24.13■■□□□ 1.45
VARS-223ENST00000474643 CCNB3Q8WWL7 1395 aa24.12■■□□□ 1.45
VARS-223ENST00000474643 ITSN2Q9NZM3 1697 aa24.11■■□□□ 1.45
VARS-223ENST00000474643 ESF1Q9H501 851 aaKnown RBP24.11■■□□□ 1.45
VARS-223ENST00000474643 TRAPPC8Q9Y2L5 1435 aa24.1■■□□□ 1.45
VARS-223ENST00000474643 CFDP1Q9UEE9 299 aaPredicted RBP24.09■■□□□ 1.45
VARS-223ENST00000474643 DIP2CQ9Y2E4 1556 aa24.08■■□□□ 1.45
VARS-223ENST00000474643 MLH3Q9UHC1 1453 aa24.08■■□□□ 1.45
VARS-223ENST00000474643 LOC105371045A0A1W2PR82 267 aa24.08■■□□□ 1.45
VARS-223ENST00000474643 ARHGEF12Q9NZN5 1544 aa24.06■■□□□ 1.44
VARS-223ENST00000474643 GPATCH8Q9UKJ3 1502 aaKnown RBP24.06■■□□□ 1.44
VARS-223ENST00000474643 LMTK3Q96Q04 1460 aa24.06■■□□□ 1.44
VARS-223ENST00000474643 ABCA6Q8N139 1617 aa24.06■■□□□ 1.44
VARS-223ENST00000474643 EHBP1L1Q8N3D4 1523 aa24.05■■□□□ 1.44
VARS-223ENST00000474643 SYCP2Q9BX26 1530 aa24.05■■□□□ 1.44
VARS-223ENST00000474643 ILDR1Q86SU0 546 aaPredicted RBP24.04■■□□□ 1.44
VARS-223ENST00000474643 PLEKHH2Q8IVE3 1493 aa24.04■■□□□ 1.44
VARS-223ENST00000474643 SAMD9LQ8IVG5 1584 aa24.03■■□□□ 1.44
VARS-223ENST00000474643 SPAG9O60271 1321 aaKnown RBP24.03■■□□□ 1.44
VARS-223ENST00000474643 REREQ9P2R6 1566 aa24.02■■□□□ 1.44
VARS-223ENST00000474643 HNRNPMP52272 730 aaKnown RBP eCLIP24.01■■□□□ 1.43
VARS-223ENST00000474643 HSPA2P54652 639 aa24■■□□□ 1.43
VARS-223ENST00000474643 CEBPAP49715 358 aaPredicted RBP23.97■■□□□ 1.43
VARS-223ENST00000474643 KIDINS220Q9ULH0 1771 aa23.97■■□□□ 1.43
VARS-223ENST00000474643 KIAA1107Q9UPP5 1409 aa23.95■■□□□ 1.42
VARS-223ENST00000474643 AGLP35573 1532 aa23.94■■□□□ 1.42
VARS-223ENST00000474643 TIAM1Q13009 1591 aa23.94■■□□□ 1.42
VARS-223ENST00000474643 ATP7AQ04656 1500 aa23.93■■□□□ 1.42
VARS-223ENST00000474643 PREX1Q8TCU6 1659 aa23.92■■□□□ 1.42
VARS-223ENST00000474643 UHRF1BP1Q6BDS2 1440 aa23.91■■□□□ 1.42
VARS-223ENST00000474643 SUPT6HQ7KZ85 1726 aaKnown RBP23.9■■□□□ 1.42
VARS-223ENST00000474643 CNTLNQ9NXG0 1405 aa23.89■■□□□ 1.41
VARS-223ENST00000474643 VPS8Q8N3P4 1428 aa23.88■■□□□ 1.41
VARS-223ENST00000474643 INO80Q9ULG1 1556 aaPredicted RBP23.86■■□□□ 1.41
VARS-223ENST00000474643 ZNF644Q9H582 1327 aaPredicted RBP23.86■■□□□ 1.41
VARS-223ENST00000474643 NCOA2Q15596 1464 aa23.86■■□□□ 1.41
VARS-223ENST00000474643 A2MP01023 1474 aa23.85■■□□□ 1.41
VARS-223ENST00000474643 C3P01024 1663 aa23.84■■□□□ 1.41
VARS-223ENST00000474643 GGT6Q6P531 493 aa23.81■■□□□ 1.4
VARS-223ENST00000474643 CAMSAP2Q08AD1 1489 aa23.8■■□□□ 1.4
VARS-223ENST00000474643 ADGBQ8N7X0 1667 aa23.79■■□□□ 1.4
VARS-223ENST00000474643 APLP2Q06481 763 aa23.79■■□□□ 1.4
VARS-223ENST00000474643 FBXO41Q8TF61 875 aa23.79■■□□□ 1.4
VARS-223ENST00000474643 DMRT2Q9Y5R5 561 aa23.78■■□□□ 1.4
VARS-223ENST00000474643 CCDC141Q6ZP82 1450 aa23.78■■□□□ 1.4
VARS-223ENST00000474643 LRRC9Q6ZRR7 1453 aa23.77■■□□□ 1.4
VARS-223ENST00000474643 SETD1BQ9UPS6 1966 aaKnown RBP23.77■■□□□ 1.4
VARS-223ENST00000474643 PLXNC1O60486 1568 aa23.77■■□□□ 1.4
VARS-223ENST00000474643 MBD5Q9P267 1494 aa23.76■■□□□ 1.39
VARS-223ENST00000474643 RSPH4AQ5TD94 716 aa23.76■■□□□ 1.39
VARS-223ENST00000474643 RTEL1-TNFRSF6BF6WH68 1400 aa23.76■■□□□ 1.39
VARS-223ENST00000474643 MROH2AA6NES4 1674 aa23.75■■□□□ 1.39
VARS-223ENST00000474643 TSPY4P0CV99 314 aa23.74■■□□□ 1.39
VARS-223ENST00000474643 TSPY10P0CW01 314 aa23.74■■□□□ 1.39
VARS-223ENST00000474643 CLTCQ00610 1675 aaKnown RBP23.73■■□□□ 1.39
VARS-223ENST00000474643 ZMYM3Q14202 1370 aa23.73■■□□□ 1.39
VARS-223ENST00000474643 NPATQ14207 1427 aa23.7■■□□□ 1.38
VARS-223ENST00000474643 DHX29Q7Z478 1369 aaKnown RBP23.69■■□□□ 1.38
VARS-223ENST00000474643 PPP6R1Q9UPN7 881 aa23.69■■□□□ 1.38
VARS-223ENST00000474643 KIF3BO15066 747 aa23.68■■□□□ 1.38
VARS-223ENST00000474643 MAP3K1Q13233 1512 aa23.68■■□□□ 1.38
VARS-223ENST00000474643 ARHGEF5Q12774 1597 aa23.65■■□□□ 1.38
VARS-223ENST00000474643 KANK4Q5T7N3 995 aaPredicted RBP23.65■■□□□ 1.38
VARS-223ENST00000474643 CERKQ8TCT0 537 aa23.64■■□□□ 1.37
VARS-223ENST00000474643 MYOM3Q5VTT5 1437 aa23.62■■□□□ 1.37
VARS-223ENST00000474643 STRCQ7RTU9 1775 aa23.62■■□□□ 1.37
VARS-223ENST00000474643 WASHC2CQ9Y4E1 1318 aa23.6■■□□□ 1.37
VARS-223ENST00000474643 MIA2Q96PC5 1412 aa23.59■■□□□ 1.37
VARS-223ENST00000474643 CAMSAP1Q5T5Y3 1602 aa23.59■■□□□ 1.37
VARS-223ENST00000474643 MYO3AQ8NEV4 1616 aa23.59■■□□□ 1.37
VARS-223ENST00000474643 PTPRKQ15262 1439 aa23.59■■□□□ 1.37
VARS-223ENST00000474643 KDM5DQ9BY66 1539 aa23.58■■□□□ 1.36
VARS-223ENST00000474643 PTPRTO14522 1441 aa23.58■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms