RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 SIGLEC1Q9BZZ2 1709 aa11.61□□□□□ -0.55
HDAC1-204ENST00000471488 SAMD9Q5K651 1589 aa11.61□□□□□ -0.55
HDAC1-204ENST00000471488 SCAPERQ9BY12 1400 aa11.6□□□□□ -0.55
HDAC1-204ENST00000471488 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.6□□□□□ -0.55
HDAC1-204ENST00000471488 TTC37Q6PGP7 1564 aa11.6□□□□□ -0.55
HDAC1-204ENST00000471488 HECW1Q76N89 1606 aa11.6□□□□□ -0.55
HDAC1-204ENST00000471488 ESF1Q9H501 851 aaKnown RBP11.59□□□□□ -0.55
HDAC1-204ENST00000471488 PREX1Q8TCU6 1659 aa11.59□□□□□ -0.55
HDAC1-204ENST00000471488 CSRNP3Q8WYN3 585 aa11.58□□□□□ -0.56
HDAC1-204ENST00000471488 UHRF1BP1Q6BDS2 1440 aa11.58□□□□□ -0.56
HDAC1-204ENST00000471488 ZMYM4Q5VZL5 1548 aa11.57□□□□□ -0.56
HDAC1-204ENST00000471488 ATP10AO60312 1499 aa11.56□□□□□ -0.56
HDAC1-204ENST00000471488 MAGI2Q86UL8 1455 aa11.56□□□□□ -0.56
HDAC1-204ENST00000471488 CDK13Q14004 1512 aaKnown RBP11.55□□□□□ -0.56
HDAC1-204ENST00000471488 C9orf84Q5VXU9 1444 aa11.55□□□□□ -0.56
HDAC1-204ENST00000471488 EFCAB2Q5VUJ9 269 aa11.53□□□□□ -0.56
HDAC1-204ENST00000471488 ARHGEF12Q9NZN5 1544 aa11.53□□□□□ -0.56
HDAC1-204ENST00000471488 STRCQ7RTU9 1775 aa11.53□□□□□ -0.56
HDAC1-204ENST00000471488 AFAP1Q8N556 730 aa11.52□□□□□ -0.57
HDAC1-204ENST00000471488 SCAF1Q9H7N4 1312 aaKnown RBP11.52□□□□□ -0.57
HDAC1-204ENST00000471488 PLCH2O75038 1416 aa11.52□□□□□ -0.57
HDAC1-204ENST00000471488 UBAP1LF5GYI3 381 aa11.5□□□□□ -0.57
HDAC1-204ENST00000471488 ARHGAP5Q13017 1502 aa11.5□□□□□ -0.57
HDAC1-204ENST00000471488 CDK11AQ9UQ88 783 aaPredicted RBP11.48□□□□□ -0.57
HDAC1-204ENST00000471488 MYO5CQ9NQX4 1742 aa11.48□□□□□ -0.57
HDAC1-204ENST00000471488 ZNF518AQ6AHZ1 1483 aa11.47□□□□□ -0.57
HDAC1-204ENST00000471488 PTPRTO14522 1441 aa11.47□□□□□ -0.57
HDAC1-204ENST00000471488 NCKAP5LQ9HCH0 1330 aa11.46□□□□□ -0.57
HDAC1-204ENST00000471488 UBTFP17480 764 aaKnown RBP11.46□□□□□ -0.57
HDAC1-204ENST00000471488 C3P01024 1663 aa11.46□□□□□ -0.58
HDAC1-204ENST00000471488 ZNF335Q9H4Z2 1342 aaPredicted RBP11.44□□□□□ -0.58
HDAC1-204ENST00000471488 PIP4K2BP78356 416 aa11.44□□□□□ -0.58
HDAC1-204ENST00000471488 SENP3Q9H4L4 574 aaPredicted RBP11.44□□□□□ -0.58
HDAC1-204ENST00000471488 KIF14Q15058 1648 aa11.44□□□□□ -0.58
HDAC1-204ENST00000471488 LTBP4Q8N2S1 1624 aa11.43□□□□□ -0.58
HDAC1-204ENST00000471488 DIP2CQ9Y2E4 1556 aa11.43□□□□□ -0.58
HDAC1-204ENST00000471488 ZNF777Q9ULD5 760 aaPredicted RBP11.43□□□□□ -0.58
HDAC1-204ENST00000471488 CLIP1P30622 1438 aa11.43□□□□□ -0.58
HDAC1-204ENST00000471488 TRAPPC8Q9Y2L5 1435 aa11.43□□□□□ -0.58
HDAC1-204ENST00000471488 SETD1BQ9UPS6 1966 aaKnown RBP11.42□□□□□ -0.58
HDAC1-204ENST00000471488 CAMSAP1Q5T5Y3 1602 aa11.42□□□□□ -0.58
HDAC1-204ENST00000471488 ABCA6Q8N139 1617 aa11.42□□□□□ -0.58
HDAC1-204ENST00000471488 NCOA1Q15788 1441 aa11.41□□□□□ -0.58
HDAC1-204ENST00000471488 PHF23Q9BUL5 403 aaPredicted RBP11.4□□□□□ -0.58
HDAC1-204ENST00000471488 KDM5CP41229 1560 aa11.39□□□□□ -0.59
HDAC1-204ENST00000471488 FMN1Q68DA7 1419 aa11.39□□□□□ -0.59
HDAC1-204ENST00000471488 IQSEC2Q5JU85 1478 aa11.38□□□□□ -0.59
HDAC1-204ENST00000471488 TROQ12816 1431 aaPredicted RBP11.38□□□□□ -0.59
HDAC1-204ENST00000471488 EEA1Q15075 1411 aa11.38□□□□□ -0.59
HDAC1-204ENST00000471488 CNTLNQ9NXG0 1405 aa11.37□□□□□ -0.59
HDAC1-204ENST00000471488 SUPT6HQ7KZ85 1726 aaKnown RBP11.36□□□□□ -0.59
HDAC1-204ENST00000471488 HSPA1LP34931 641 aa11.36□□□□□ -0.59
HDAC1-204ENST00000471488 GGT6Q6P531 493 aa11.36□□□□□ -0.59
HDAC1-204ENST00000471488 PPP6R1Q9UPN7 881 aa11.36□□□□□ -0.59
HDAC1-204ENST00000471488 ZMYM3Q14202 1370 aa11.35□□□□□ -0.59
HDAC1-204ENST00000471488 MLH3Q9UHC1 1453 aa11.35□□□□□ -0.59
HDAC1-204ENST00000471488 CDC42BPBQ9Y5S2 1711 aa11.35□□□□□ -0.59
HDAC1-204ENST00000471488 REREQ9P2R6 1566 aa11.34□□□□□ -0.59
HDAC1-204ENST00000471488 AGLP35573 1532 aa11.34□□□□□ -0.59
HDAC1-204ENST00000471488 SPAG9O60271 1321 aaKnown RBP11.34□□□□□ -0.59
HDAC1-204ENST00000471488 PKD2Q13563 968 aa11.33□□□□□ -0.6
HDAC1-204ENST00000471488 ABCC1P33527 1531 aa11.33□□□□□ -0.6
HDAC1-204ENST00000471488 ITSN2Q9NZM3 1697 aa11.33□□□□□ -0.6
HDAC1-204ENST00000471488 ARHGAP35Q9NRY4 1499 aa11.32□□□□□ -0.6
HDAC1-204ENST00000471488 TOM1O60784 492 aa11.32□□□□□ -0.6
HDAC1-204ENST00000471488 HNRNPMP52272 730 aaKnown RBP eCLIP11.32□□□□□ -0.6
HDAC1-204ENST00000471488 CLTCQ00610 1675 aaKnown RBP11.32□□□□□ -0.6
HDAC1-204ENST00000471488 MED1Q15648 1581 aaPredicted RBP11.32□□□□□ -0.6
HDAC1-204ENST00000471488 PREX2Q70Z35 1606 aa11.31□□□□□ -0.6
HDAC1-204ENST00000471488 KIDINS220Q9ULH0 1771 aa11.31□□□□□ -0.6
HDAC1-204ENST00000471488 NPATQ14207 1427 aa11.31□□□□□ -0.6
HDAC1-204ENST00000471488 MYO3AQ8NEV4 1616 aa11.31□□□□□ -0.6
HDAC1-204ENST00000471488 CEP170BQ9Y4F5 1589 aaPredicted RBP11.29□□□□□ -0.6
HDAC1-204ENST00000471488 CHIC1Q5VXU3 224 aa11.29□□□□□ -0.6
HDAC1-204ENST00000471488 SYCP2Q9BX26 1530 aa11.29□□□□□ -0.6
HDAC1-204ENST00000471488 LRRIQ1Q96JM4 1722 aa11.29□□□□□ -0.6
HDAC1-204ENST00000471488 MROH2AA6NES4 1674 aa11.28□□□□□ -0.6
HDAC1-204ENST00000471488 SAMD9LQ8IVG5 1584 aa11.28□□□□□ -0.6
HDAC1-204ENST00000471488 PLA2R1Q13018 1463 aa11.26□□□□□ -0.61
HDAC1-204ENST00000471488 CDC42BPAQ5VT25 1732 aa11.26□□□□□ -0.61
HDAC1-204ENST00000471488 PTPRKQ15262 1439 aa11.26□□□□□ -0.61
HDAC1-204ENST00000471488 CFDP1Q9UEE9 299 aaPredicted RBP11.25□□□□□ -0.61
HDAC1-204ENST00000471488 A2MP01023 1474 aa11.25□□□□□ -0.61
HDAC1-204ENST00000471488 TCOF1Q13428 1488 aaKnown RBP11.25□□□□□ -0.61
HDAC1-204ENST00000471488 ATP7AQ04656 1500 aa11.25□□□□□ -0.61
HDAC1-204ENST00000471488 ZNF142P52746 1687 aaPredicted RBP11.24□□□□□ -0.61
HDAC1-204ENST00000471488 CCDC18Q5T9S5 1454 aa11.24□□□□□ -0.61
HDAC1-204ENST00000471488 FBXO31Q5XUX0 539 aaPredicted RBP11.23□□□□□ -0.61
HDAC1-204ENST00000471488 CCNB3Q8WWL7 1395 aa11.22□□□□□ -0.61
HDAC1-204ENST00000471488 SHANK2Q9UPX8 1470 aa11.22□□□□□ -0.61
HDAC1-204ENST00000471488 CPS1P31327 1500 aa11.21□□□□□ -0.61
HDAC1-204ENST00000471488 A2ML1A8K2U0 1454 aa11.21□□□□□ -0.61
HDAC1-204ENST00000471488 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.21□□□□□ -0.61
HDAC1-204ENST00000471488 ANKLE2Q86XL3 938 aa11.21□□□□□ -0.61
HDAC1-204ENST00000471488 DNMT1P26358 1616 aaKnown RBP11.2□□□□□ -0.62
HDAC1-204ENST00000471488 CASKIN1Q8WXD9 1431 aa11.2□□□□□ -0.62
HDAC1-204ENST00000471488 TNRQ92752 1358 aa11.2□□□□□ -0.62
HDAC1-204ENST00000471488 POLR1AO95602 1720 aaPredicted RBP11.2□□□□□ -0.62
HDAC1-204ENST00000471488 KIF3BO15066 747 aa11.19□□□□□ -0.62
HDAC1-204ENST00000471488 GPATCH8Q9UKJ3 1502 aaKnown RBP11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms