RNA–Protein interactions for RNA: ENST00000471260.1

HMGN1-211, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-211ENST00000471260 POGZQ7Z3K3 1410 aa21.75■■□□□ 1.07
HMGN1-211ENST00000471260 ARID4BQ4LE39 1312 aaPredicted RBP21.74■■□□□ 1.07
HMGN1-211ENST00000471260 ARHGAP5Q13017 1502 aa21.73■■□□□ 1.07
HMGN1-211ENST00000471260 ADAMTSL3P82987 1691 aa21.72■■□□□ 1.07
HMGN1-211ENST00000471260 ZFYVE16Q7Z3T8 1539 aa21.71■■□□□ 1.07
HMGN1-211ENST00000471260 ZNF518AQ6AHZ1 1483 aa21.7■■□□□ 1.06
HMGN1-211ENST00000471260 BCORL1Q5H9F3 1711 aa21.69■■□□□ 1.06
HMGN1-211ENST00000471260 YEATS2Q9ULM3 1422 aa21.69■■□□□ 1.06
HMGN1-211ENST00000471260 CDC42BPBQ9Y5S2 1711 aa21.66■■□□□ 1.06
HMGN1-211ENST00000471260 PTPRMP28827 1452 aa21.66■■□□□ 1.06
HMGN1-211ENST00000471260 CEP162Q5TB80 1403 aa21.66■■□□□ 1.06
HMGN1-211ENST00000471260 PREX2Q70Z35 1606 aa21.66■■□□□ 1.06
HMGN1-211ENST00000471260 ATP10AO60312 1499 aa21.64■■□□□ 1.05
HMGN1-211ENST00000471260 KDM5CP41229 1560 aa21.63■■□□□ 1.05
HMGN1-211ENST00000471260 AFAP1Q8N556 730 aa21.63■■□□□ 1.05
HMGN1-211ENST00000471260 HECW2Q9P2P5 1572 aa21.62■■□□□ 1.05
HMGN1-211ENST00000471260 C9orf84Q5VXU9 1444 aa21.61■■□□□ 1.05
HMGN1-211ENST00000471260 MADDQ8WXG6 1647 aa21.6■■□□□ 1.05
HMGN1-211ENST00000471260 MTUS2Q5JR59 1369 aa21.6■■□□□ 1.05
HMGN1-211ENST00000471260 CDC42BPAQ5VT25 1732 aa21.59■■□□□ 1.05
HMGN1-211ENST00000471260 ABCC1P33527 1531 aa21.59■■□□□ 1.05
HMGN1-211ENST00000471260 MLH3Q9UHC1 1453 aa21.58■■□□□ 1.05
HMGN1-211ENST00000471260 GPATCH8Q9UKJ3 1502 aaKnown RBP21.58■■□□□ 1.04
HMGN1-211ENST00000471260 MYT1LQ9UL68 1186 aa21.56■■□□□ 1.04
HMGN1-211ENST00000471260 ARHGEF12Q9NZN5 1544 aa21.55■■□□□ 1.04
HMGN1-211ENST00000471260 TRAPPC8Q9Y2L5 1435 aa21.55■■□□□ 1.04
HMGN1-211ENST00000471260 CCNB3Q8WWL7 1395 aa21.54■■□□□ 1.04
HMGN1-211ENST00000471260 SIGLEC1Q9BZZ2 1709 aa21.54■■□□□ 1.04
HMGN1-211ENST00000471260 ITSN2Q9NZM3 1697 aa21.53■■□□□ 1.04
HMGN1-211ENST00000471260 CFDP1Q9UEE9 299 aaPredicted RBP21.53■■□□□ 1.04
HMGN1-211ENST00000471260 REREQ9P2R6 1566 aa21.53■■□□□ 1.04
HMGN1-211ENST00000471260 LOC105371045A0A1W2PR82 267 aa21.52■■□□□ 1.04
HMGN1-211ENST00000471260 ZNF777Q9ULD5 760 aaPredicted RBP21.52■■□□□ 1.04
HMGN1-211ENST00000471260 RIMS1Q86UR5 1692 aaKnown RBP21.52■■□□□ 1.04
HMGN1-211ENST00000471260 PLEKHH2Q8IVE3 1493 aa21.52■■□□□ 1.03
HMGN1-211ENST00000471260 EHBP1L1Q8N3D4 1523 aa21.51■■□□□ 1.03
HMGN1-211ENST00000471260 MLECQ14165 292 aa21.51■■□□□ 1.03
HMGN1-211ENST00000471260 KIAA1107Q9UPP5 1409 aa21.51■■□□□ 1.03
HMGN1-211ENST00000471260 SAMD9LQ8IVG5 1584 aa21.49■■□□□ 1.03
HMGN1-211ENST00000471260 DIP2CQ9Y2E4 1556 aa21.49■■□□□ 1.03
HMGN1-211ENST00000471260 FER1L4A9Z1Z3 1794 aa21.46■■□□□ 1.03
HMGN1-211ENST00000471260 AGLP35573 1532 aa21.45■■□□□ 1.02
HMGN1-211ENST00000471260 SYCP2Q9BX26 1530 aa21.45■■□□□ 1.02
HMGN1-211ENST00000471260 ABCA6Q8N139 1617 aa21.45■■□□□ 1.02
HMGN1-211ENST00000471260 HNRNPMP52272 730 aaKnown RBP eCLIP21.45■■□□□ 1.02
HMGN1-211ENST00000471260 VPS8Q8N3P4 1428 aa21.45■■□□□ 1.02
HMGN1-211ENST00000471260 KIDINS220Q9ULH0 1771 aa21.44■■□□□ 1.02
HMGN1-211ENST00000471260 SPAG9O60271 1321 aaKnown RBP21.44■■□□□ 1.02
HMGN1-211ENST00000471260 TIAM1Q13009 1591 aa21.42■■□□□ 1.02
HMGN1-211ENST00000471260 LMTK3Q96Q04 1460 aa21.41■■□□□ 1.02
HMGN1-211ENST00000471260 SUPT6HQ7KZ85 1726 aaKnown RBP21.38■■□□□ 1.01
HMGN1-211ENST00000471260 PLPPR3Q6T4P5 718 aa21.37■■□□□ 1.01
HMGN1-211ENST00000471260 NCOA2Q15596 1464 aa21.37■■□□□ 1.01
HMGN1-211ENST00000471260 ATP7AQ04656 1500 aa21.36■■□□□ 1.01
HMGN1-211ENST00000471260 MAP3K1Q13233 1512 aa21.36■■□□□ 1.01
HMGN1-211ENST00000471260 RSPH4AQ5TD94 716 aa21.36■■□□□ 1.01
HMGN1-211ENST00000471260 ESF1Q9H501 851 aaKnown RBP21.36■■□□□ 1.01
HMGN1-211ENST00000471260 ZNF644Q9H582 1327 aaPredicted RBP21.35■■□□□ 1.01
HMGN1-211ENST00000471260 MBD5Q9P267 1494 aa21.35■■□□□ 1.01
HMGN1-211ENST00000471260 INO80Q9ULG1 1556 aaPredicted RBP21.34■■□□□ 1.01
HMGN1-211ENST00000471260 LRRC9Q6ZRR7 1453 aa21.33■■□□□ 1.01
HMGN1-211ENST00000471260 RTEL1-TNFRSF6BF6WH68 1400 aa21.33■■□□□ 1.01
HMGN1-211ENST00000471260 CNTLNQ9NXG0 1405 aa21.33■■□□□ 1.01
HMGN1-211ENST00000471260 CEBPAP49715 358 aaPredicted RBP21.32■■□□□ 1
HMGN1-211ENST00000471260 SETD1BQ9UPS6 1966 aaKnown RBP21.32■■□□□ 1
HMGN1-211ENST00000471260 A2MP01023 1474 aa21.31■■□□□ 1
HMGN1-211ENST00000471260 PLXNC1O60486 1568 aa21.28■■□□□ 1
HMGN1-211ENST00000471260 CAMSAP2Q08AD1 1489 aa21.27■■□□□ 1
HMGN1-211ENST00000471260 HSPA2P54652 639 aa21.27■■□□□ 1
HMGN1-211ENST00000471260 PPP6R1Q9UPN7 881 aa21.27■■□□□ 1
HMGN1-211ENST00000471260 PREX1Q8TCU6 1659 aa21.27■■□□□ 1
HMGN1-211ENST00000471260 CCDC141Q6ZP82 1450 aa21.26■□□□□ 0.99
HMGN1-211ENST00000471260 ADGBQ8N7X0 1667 aa21.25■□□□□ 0.99
HMGN1-211ENST00000471260 UHRF1BP1Q6BDS2 1440 aa21.24■□□□□ 0.99
HMGN1-211ENST00000471260 KANK4Q5T7N3 995 aaPredicted RBP21.24■□□□□ 0.99
HMGN1-211ENST00000471260 C3P01024 1663 aa21.24■□□□□ 0.99
HMGN1-211ENST00000471260 APLP2Q06481 763 aa21.23■□□□□ 0.99
HMGN1-211ENST00000471260 DHX29Q7Z478 1369 aaKnown RBP21.23■□□□□ 0.99
HMGN1-211ENST00000471260 TSPY4P0CV99 314 aa21.22■□□□□ 0.99
HMGN1-211ENST00000471260 TSPY10P0CW01 314 aa21.22■□□□□ 0.99
HMGN1-211ENST00000471260 ILDR1Q86SU0 546 aaPredicted RBP21.22■□□□□ 0.99
HMGN1-211ENST00000471260 ARHGEF5Q12774 1597 aa21.22■□□□□ 0.99
HMGN1-211ENST00000471260 MROH2AA6NES4 1674 aa21.21■□□□□ 0.99
HMGN1-211ENST00000471260 MIA2Q96PC5 1412 aa21.21■□□□□ 0.99
HMGN1-211ENST00000471260 ZMYM3Q14202 1370 aa21.21■□□□□ 0.99
HMGN1-211ENST00000471260 GGT6Q6P531 493 aa21.2■□□□□ 0.98
HMGN1-211ENST00000471260 NPATQ14207 1427 aa21.19■□□□□ 0.98
HMGN1-211ENST00000471260 MYOM3Q5VTT5 1437 aa21.18■□□□□ 0.98
HMGN1-211ENST00000471260 DMRT2Q9Y5R5 561 aa21.16■□□□□ 0.98
HMGN1-211ENST00000471260 CLTCQ00610 1675 aaKnown RBP21.12■□□□□ 0.97
HMGN1-211ENST00000471260 KIF3BO15066 747 aa21.12■□□□□ 0.97
HMGN1-211ENST00000471260 FAM135AQ9P2D6 1515 aa21.11■□□□□ 0.97
HMGN1-211ENST00000471260 MAST1Q9Y2H9 1570 aa21.1■□□□□ 0.97
HMGN1-211ENST00000471260 FBXO41Q8TF61 875 aa21.09■□□□□ 0.97
HMGN1-211ENST00000471260 PTPRKQ15262 1439 aa21.08■□□□□ 0.97
HMGN1-211ENST00000471260 STRCQ7RTU9 1775 aa21.06■□□□□ 0.96
HMGN1-211ENST00000471260 WASHC2CQ9Y4E1 1318 aa21.04■□□□□ 0.96
HMGN1-211ENST00000471260 PTPRTO14522 1441 aa21.04■□□□□ 0.96
HMGN1-211ENST00000471260 KDM5DQ9BY66 1539 aa21.04■□□□□ 0.96
HMGN1-211ENST00000471260 NCOA1Q15788 1441 aa21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms