RNA–Protein interactions for RNA: ENST00000468949.1

HDAC6-216, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-216ENST00000468949 COL17A1Q9UMD9 1497 aaPredicted RBP12.58□□□□□ -0.4
HDAC6-216ENST00000468949 SCAF1Q9H7N4 1312 aaKnown RBP12.58□□□□□ -0.4
HDAC6-216ENST00000468949 TROQ12816 1431 aaPredicted RBP12.57□□□□□ -0.4
HDAC6-216ENST00000468949 LRRC9Q6ZRR7 1453 aa12.57□□□□□ -0.4
HDAC6-216ENST00000468949 ARAP3Q8WWN8 1544 aa12.57□□□□□ -0.4
HDAC6-216ENST00000468949 MYO5CQ9NQX4 1742 aa12.56□□□□□ -0.4
HDAC6-216ENST00000468949 PHLDB1Q86UU1 1377 aa12.55□□□□□ -0.4
HDAC6-216ENST00000468949 SUPT6HQ7KZ85 1726 aaKnown RBP12.54□□□□□ -0.4
HDAC6-216ENST00000468949 FRMPD1Q5SYB0 1578 aa12.53□□□□□ -0.4
HDAC6-216ENST00000468949 PPARGC1BQ86YN6 1023 aaKnown RBP12.53□□□□□ -0.4
HDAC6-216ENST00000468949 FANCAO15360 1455 aa12.53□□□□□ -0.4
HDAC6-216ENST00000468949 KANK4Q5T7N3 995 aaPredicted RBP12.51□□□□□ -0.41
HDAC6-216ENST00000468949 ARHGEF40Q8TER5 1519 aa12.5□□□□□ -0.41
HDAC6-216ENST00000468949 PREX2Q70Z35 1606 aa12.5□□□□□ -0.41
HDAC6-216ENST00000468949 RICTORQ6R327 1708 aa12.5□□□□□ -0.41
HDAC6-216ENST00000468949 CCNB3Q8WWL7 1395 aa12.49□□□□□ -0.41
HDAC6-216ENST00000468949 MAPK8IP2Q13387 824 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-216ENST00000468949 ZMYM4Q5VZL5 1548 aa12.48□□□□□ -0.41
HDAC6-216ENST00000468949 NCOA2Q15596 1464 aa12.48□□□□□ -0.41
HDAC6-216ENST00000468949 NPM3O75607 178 aaKnown RBP12.48□□□□□ -0.41
HDAC6-216ENST00000468949 CNKSR2Q8WXI2 1034 aa12.47□□□□□ -0.41
HDAC6-216ENST00000468949 ARHGAP5Q13017 1502 aa12.47□□□□□ -0.41
HDAC6-216ENST00000468949 DENND4BO75064 1496 aaPredicted RBP12.46□□□□□ -0.41
HDAC6-216ENST00000468949 ADGRL1O94910 1474 aa12.46□□□□□ -0.41
HDAC6-216ENST00000468949 PLCH2O75038 1416 aa12.46□□□□□ -0.41
HDAC6-216ENST00000468949 AKNAQ7Z591 1439 aa12.46□□□□□ -0.41
HDAC6-216ENST00000468949 ITSN2Q9NZM3 1697 aa12.45□□□□□ -0.42
HDAC6-216ENST00000468949 CDC42BPAQ5VT25 1732 aa12.44□□□□□ -0.42
HDAC6-216ENST00000468949 POGZQ7Z3K3 1410 aa12.44□□□□□ -0.42
HDAC6-216ENST00000468949 CDC42BPBQ9Y5S2 1711 aa12.43□□□□□ -0.42
HDAC6-216ENST00000468949 MYOM3Q5VTT5 1437 aa12.43□□□□□ -0.42
HDAC6-216ENST00000468949 ZFYVE16Q7Z3T8 1539 aa12.42□□□□□ -0.42
HDAC6-216ENST00000468949 ABCC1P33527 1531 aa12.42□□□□□ -0.42
HDAC6-216ENST00000468949 CFDP1Q9UEE9 299 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-216ENST00000468949 ZNF518AQ6AHZ1 1483 aa12.4□□□□□ -0.42
HDAC6-216ENST00000468949 KDM5CP41229 1560 aa12.4□□□□□ -0.42
HDAC6-216ENST00000468949 MAGI2Q86UL8 1455 aa12.4□□□□□ -0.43
HDAC6-216ENST00000468949 HECW2Q9P2P5 1572 aa12.39□□□□□ -0.43
HDAC6-216ENST00000468949 GPATCH8Q9UKJ3 1502 aaKnown RBP12.39□□□□□ -0.43
HDAC6-216ENST00000468949 RAPGEF3O95398 923 aa12.39□□□□□ -0.43
HDAC6-216ENST00000468949 ZNF777Q9ULD5 760 aaPredicted RBP12.39□□□□□ -0.43
HDAC6-216ENST00000468949 FGD6Q6ZV73 1430 aa12.38□□□□□ -0.43
HDAC6-216ENST00000468949 MIA2Q96PC5 1412 aa12.38□□□□□ -0.43
HDAC6-216ENST00000468949 SCAPERQ9BY12 1400 aa12.38□□□□□ -0.43
HDAC6-216ENST00000468949 FAM50AQ14320 339 aaKnown RBP12.37□□□□□ -0.43
HDAC6-216ENST00000468949 EFCAB2Q5VUJ9 269 aa12.37□□□□□ -0.43
HDAC6-216ENST00000468949 BCORL1Q5H9F3 1711 aa12.37□□□□□ -0.43
HDAC6-216ENST00000468949 SAMD9LQ8IVG5 1584 aa12.36□□□□□ -0.43
HDAC6-216ENST00000468949 KDM4FA0A1W2PPD8 638 aa12.36□□□□□ -0.43
HDAC6-216ENST00000468949 SLC4A1APQ9BWU0 796 aaKnown RBP12.36□□□□□ -0.43
HDAC6-216ENST00000468949 PLEKHH2Q8IVE3 1493 aa12.35□□□□□ -0.43
HDAC6-216ENST00000468949 PTPN23Q9H3S7 1636 aa12.35□□□□□ -0.43
HDAC6-216ENST00000468949 ADAMTSL3P82987 1691 aa12.35□□□□□ -0.43
HDAC6-216ENST00000468949 CAMSAP2Q08AD1 1489 aa12.34□□□□□ -0.43
HDAC6-216ENST00000468949 SYCP2Q9BX26 1530 aa12.34□□□□□ -0.43
HDAC6-216ENST00000468949 YEATS2Q9ULM3 1422 aa12.34□□□□□ -0.43
HDAC6-216ENST00000468949 RRBP1Q9P2E9 1410 aaKnown RBP12.33□□□□□ -0.44
HDAC6-216ENST00000468949 DIP2CQ9Y2E4 1556 aa12.33□□□□□ -0.44
HDAC6-216ENST00000468949 SIGLEC1Q9BZZ2 1709 aa12.33□□□□□ -0.44
HDAC6-216ENST00000468949 ABCA6Q8N139 1617 aa12.33□□□□□ -0.44
HDAC6-216ENST00000468949 REREQ9P2R6 1566 aa12.32□□□□□ -0.44
HDAC6-216ENST00000468949 C9orf84Q5VXU9 1444 aa12.32□□□□□ -0.44
HDAC6-216ENST00000468949 MADDQ8WXG6 1647 aa12.32□□□□□ -0.44
HDAC6-216ENST00000468949 TCOF1Q13428 1488 aaKnown RBP12.31□□□□□ -0.44
HDAC6-216ENST00000468949 ARHGEF12Q9NZN5 1544 aa12.31□□□□□ -0.44
HDAC6-216ENST00000468949 MLH3Q9UHC1 1453 aa12.3□□□□□ -0.44
HDAC6-216ENST00000468949 INO80Q9ULG1 1556 aaPredicted RBP12.3□□□□□ -0.44
HDAC6-216ENST00000468949 TRIM26Q12899 539 aaPredicted RBP12.29□□□□□ -0.44
HDAC6-216ENST00000468949 RIMS1Q86UR5 1692 aaKnown RBP12.29□□□□□ -0.44
HDAC6-216ENST00000468949 TRAPPC8Q9Y2L5 1435 aa12.28□□□□□ -0.44
HDAC6-216ENST00000468949 ATP10AO60312 1499 aa12.28□□□□□ -0.44
HDAC6-216ENST00000468949 FER1L4A9Z1Z3 1794 aa12.28□□□□□ -0.44
HDAC6-216ENST00000468949 KIDINS220Q9ULH0 1771 aa12.28□□□□□ -0.44
HDAC6-216ENST00000468949 ITGAEP38570 1179 aa12.28□□□□□ -0.44
HDAC6-216ENST00000468949 ZNF644Q9H582 1327 aaPredicted RBP12.28□□□□□ -0.44
HDAC6-216ENST00000468949 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.28□□□□□ -0.44
HDAC6-216ENST00000468949 KIAA1107Q9UPP5 1409 aa12.28□□□□□ -0.44
HDAC6-216ENST00000468949 CCDC141Q6ZP82 1450 aa12.27□□□□□ -0.44
HDAC6-216ENST00000468949 ATP7AQ04656 1500 aa12.27□□□□□ -0.44
HDAC6-216ENST00000468949 MYT1LQ9UL68 1186 aa12.27□□□□□ -0.45
HDAC6-216ENST00000468949 RSPH4AQ5TD94 716 aa12.26□□□□□ -0.45
HDAC6-216ENST00000468949 ARID4BQ4LE39 1312 aaPredicted RBP12.26□□□□□ -0.45
HDAC6-216ENST00000468949 PTPRMP28827 1452 aa12.26□□□□□ -0.45
HDAC6-216ENST00000468949 TSPY4P0CV99 314 aa12.25□□□□□ -0.45
HDAC6-216ENST00000468949 TSPY10P0CW01 314 aa12.25□□□□□ -0.45
HDAC6-216ENST00000468949 HNRNPMP52272 730 aaKnown RBP eCLIP12.25□□□□□ -0.45
HDAC6-216ENST00000468949 ARHGEF5Q12774 1597 aa12.25□□□□□ -0.45
HDAC6-216ENST00000468949 DNMT1P26358 1616 aaKnown RBP12.25□□□□□ -0.45
HDAC6-216ENST00000468949 AGLP35573 1532 aa12.24□□□□□ -0.45
HDAC6-216ENST00000468949 DAPK1P53355 1430 aa12.24□□□□□ -0.45
HDAC6-216ENST00000468949 ADGBQ8N7X0 1667 aa12.23□□□□□ -0.45
HDAC6-216ENST00000468949 AFAP1Q8N556 730 aa12.23□□□□□ -0.45
HDAC6-216ENST00000468949 PLXNC1O60486 1568 aa12.22□□□□□ -0.45
HDAC6-216ENST00000468949 SHANK2Q9UPX8 1470 aa12.22□□□□□ -0.45
HDAC6-216ENST00000468949 CROCC2H7BZ55 1655 aa12.22□□□□□ -0.45
HDAC6-216ENST00000468949 MBD5Q9P267 1494 aa12.21□□□□□ -0.45
HDAC6-216ENST00000468949 SPAG9O60271 1321 aaKnown RBP12.21□□□□□ -0.45
HDAC6-216ENST00000468949 ABCC5O15440 1437 aa12.2□□□□□ -0.46
HDAC6-216ENST00000468949 DMRT2Q9Y5R5 561 aa12.2□□□□□ -0.46
HDAC6-216ENST00000468949 ANKRD30AQ9BXX3 1397 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms