RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 YEATS2Q9ULM3 1422 aa34.56■■■■□ 3.12
COL9A3-207ENST00000467819 SIGLEC1Q9BZZ2 1709 aa34.56■■■■□ 3.12
COL9A3-207ENST00000467819 TROQ12816 1431 aaPredicted RBP34.55■■■■□ 3.12
COL9A3-207ENST00000467819 POGZQ7Z3K3 1410 aa34.55■■■■□ 3.12
COL9A3-207ENST00000467819 PCF11O94913 1555 aaKnown RBP34.53■■■■□ 3.12
COL9A3-207ENST00000467819 MAGI2Q86UL8 1455 aa34.52■■■■□ 3.12
COL9A3-207ENST00000467819 CLIP1P30622 1438 aa34.51■■■■□ 3.12
COL9A3-207ENST00000467819 ILDR1Q86SU0 546 aaPredicted RBP34.5■■■■□ 3.11
COL9A3-207ENST00000467819 EFCAB2Q5VUJ9 269 aa34.49■■■■□ 3.11
COL9A3-207ENST00000467819 ARHGAP5Q13017 1502 aa34.47■■■■□ 3.11
COL9A3-207ENST00000467819 CASKIN1Q8WXD9 1431 aa34.43■■■■□ 3.1
COL9A3-207ENST00000467819 CDC42BPBQ9Y5S2 1711 aa34.42■■■■□ 3.1
COL9A3-207ENST00000467819 CCDC18Q5T9S5 1454 aa34.41■■■■□ 3.1
COL9A3-207ENST00000467819 FER1L4A9Z1Z3 1794 aa34.41■■■■□ 3.1
COL9A3-207ENST00000467819 MLECQ14165 292 aa34.38■■■■□ 3.09
COL9A3-207ENST00000467819 PREX2Q70Z35 1606 aa34.37■■■■□ 3.09
COL9A3-207ENST00000467819 ZNF518AQ6AHZ1 1483 aa34.36■■■■□ 3.09
COL9A3-207ENST00000467819 PLPPR3Q6T4P5 718 aa34.36■■■■□ 3.09
COL9A3-207ENST00000467819 ATP10AO60312 1499 aa34.35■■■■□ 3.09
COL9A3-207ENST00000467819 LMTK3Q96Q04 1460 aa34.34■■■■□ 3.09
COL9A3-207ENST00000467819 C9orf84Q5VXU9 1444 aa34.33■■■■□ 3.09
COL9A3-207ENST00000467819 FYCO1Q9BQS8 1478 aa34.33■■■■□ 3.09
COL9A3-207ENST00000467819 KDM5CP41229 1560 aa34.32■■■■□ 3.09
COL9A3-207ENST00000467819 AFAP1Q8N556 730 aa34.29■■■■□ 3.08
COL9A3-207ENST00000467819 CDC42BPAQ5VT25 1732 aa34.29■■■■□ 3.08
COL9A3-207ENST00000467819 MYT1LQ9UL68 1186 aa34.26■■■■□ 3.08
COL9A3-207ENST00000467819 ITSN2Q9NZM3 1697 aa34.25■■■■□ 3.07
COL9A3-207ENST00000467819 ARHGEF12Q9NZN5 1544 aa34.25■■■■□ 3.07
COL9A3-207ENST00000467819 ABCC1P33527 1531 aa34.25■■■■□ 3.07
COL9A3-207ENST00000467819 DIP2CQ9Y2E4 1556 aa34.23■■■■□ 3.07
COL9A3-207ENST00000467819 ABCA6Q8N139 1617 aa34.21■■■■□ 3.07
COL9A3-207ENST00000467819 TRAPPC8Q9Y2L5 1435 aa34.17■■■■□ 3.06
COL9A3-207ENST00000467819 MLH3Q9UHC1 1453 aa34.15■■■■□ 3.06
COL9A3-207ENST00000467819 HSPA2P54652 639 aa34.15■■■■□ 3.06
COL9A3-207ENST00000467819 REREQ9P2R6 1566 aa34.14■■■■□ 3.06
COL9A3-207ENST00000467819 KIDINS220Q9ULH0 1771 aa34.1■■■■□ 3.05
COL9A3-207ENST00000467819 SAMD9LQ8IVG5 1584 aa34.1■■■■□ 3.05
COL9A3-207ENST00000467819 PREX1Q8TCU6 1659 aa34.09■■■■□ 3.05
COL9A3-207ENST00000467819 ZNF777Q9ULD5 760 aaPredicted RBP34.07■■■■□ 3.04
COL9A3-207ENST00000467819 GPATCH8Q9UKJ3 1502 aaKnown RBP34.05■■■■□ 3.04
COL9A3-207ENST00000467819 CEBPAP49715 358 aaPredicted RBP34.05■■■■□ 3.04
COL9A3-207ENST00000467819 SYCP2Q9BX26 1530 aa34.04■■■■□ 3.04
COL9A3-207ENST00000467819 AGLP35573 1532 aa34.01■■■■□ 3.04
COL9A3-207ENST00000467819 FBXO41Q8TF61 875 aa33.99■■■■□ 3.03
COL9A3-207ENST00000467819 MTUS2Q5JR59 1369 aa33.98■■■■□ 3.03
COL9A3-207ENST00000467819 C3P01024 1663 aa33.98■■■■□ 3.03
COL9A3-207ENST00000467819 CCNB3Q8WWL7 1395 aa33.96■■■■□ 3.03
COL9A3-207ENST00000467819 SETD1BQ9UPS6 1966 aaKnown RBP33.95■■■■□ 3.03
COL9A3-207ENST00000467819 HNRNPMP52272 730 aaKnown RBP eCLIP33.94■■■■□ 3.02
COL9A3-207ENST00000467819 CFDP1Q9UEE9 299 aaPredicted RBP33.93■■■■□ 3.02
COL9A3-207ENST00000467819 CEP162Q5TB80 1403 aa33.93■■■■□ 3.02
COL9A3-207ENST00000467819 SUPT6HQ7KZ85 1726 aaKnown RBP33.9■■■■□ 3.02
COL9A3-207ENST00000467819 PLEKHH2Q8IVE3 1493 aa33.9■■■■□ 3.02
COL9A3-207ENST00000467819 SPAG9O60271 1321 aaKnown RBP33.9■■■■□ 3.02
COL9A3-207ENST00000467819 ESF1Q9H501 851 aaKnown RBP33.9■■■■□ 3.02
COL9A3-207ENST00000467819 EHBP1L1Q8N3D4 1523 aa33.89■■■■□ 3.02
COL9A3-207ENST00000467819 TIAM1Q13009 1591 aa33.89■■■■□ 3.02
COL9A3-207ENST00000467819 ATP7AQ04656 1500 aa33.89■■■■□ 3.02
COL9A3-207ENST00000467819 UHRF1BP1Q6BDS2 1440 aa33.88■■■■□ 3.01
COL9A3-207ENST00000467819 INO80Q9ULG1 1556 aaPredicted RBP33.87■■■■□ 3.01
COL9A3-207ENST00000467819 KIAA1107Q9UPP5 1409 aa33.87■■■■□ 3.01
COL9A3-207ENST00000467819 STRCQ7RTU9 1775 aa33.83■■■■□ 3.01
COL9A3-207ENST00000467819 CNTLNQ9NXG0 1405 aa33.8■■■■□ 3
COL9A3-207ENST00000467819 MROH2AA6NES4 1674 aa33.79■■■■□ 3
COL9A3-207ENST00000467819 PLXNC1O60486 1568 aa33.77■■■■□ 3
COL9A3-207ENST00000467819 ZNF644Q9H582 1327 aaPredicted RBP33.76■■■□□ 2.99
COL9A3-207ENST00000467819 A2MP01023 1474 aa33.76■■■□□ 2.99
COL9A3-207ENST00000467819 ADGBQ8N7X0 1667 aa33.74■■■□□ 2.99
COL9A3-207ENST00000467819 CLTCQ00610 1675 aaKnown RBP33.74■■■□□ 2.99
COL9A3-207ENST00000467819 CERKQ8TCT0 537 aa33.69■■■□□ 2.98
COL9A3-207ENST00000467819 MBD5Q9P267 1494 aa33.69■■■□□ 2.98
COL9A3-207ENST00000467819 NCOA2Q15596 1464 aa33.66■■■□□ 2.98
COL9A3-207ENST00000467819 DMRT2Q9Y5R5 561 aa33.66■■■□□ 2.98
COL9A3-207ENST00000467819 ZMYM3Q14202 1370 aa33.65■■■□□ 2.98
COL9A3-207ENST00000467819 NPATQ14207 1427 aa33.62■■■□□ 2.97
COL9A3-207ENST00000467819 GGT6Q6P531 493 aa33.62■■■□□ 2.97
COL9A3-207ENST00000467819 CAMSAP2Q08AD1 1489 aa33.61■■■□□ 2.97
COL9A3-207ENST00000467819 LOC105371045A0A1W2PR82 267 aa33.6■■■□□ 2.97
COL9A3-207ENST00000467819 RTEL1-TNFRSF6BF6WH68 1400 aa33.58■■■□□ 2.97
COL9A3-207ENST00000467819 CCDC141Q6ZP82 1450 aa33.56■■■□□ 2.96
COL9A3-207ENST00000467819 VPS8Q8N3P4 1428 aa33.56■■■□□ 2.96
COL9A3-207ENST00000467819 PTPRTO14522 1441 aa33.55■■■□□ 2.96
COL9A3-207ENST00000467819 MYO3AQ8NEV4 1616 aa33.55■■■□□ 2.96
COL9A3-207ENST00000467819 NCOA1Q15788 1441 aa33.54■■■□□ 2.96
COL9A3-207ENST00000467819 CAMSAP1Q5T5Y3 1602 aa33.54■■■□□ 2.96
COL9A3-207ENST00000467819 ZNF142P52746 1687 aaPredicted RBP33.52■■■□□ 2.96
COL9A3-207ENST00000467819 DHX29Q7Z478 1369 aaKnown RBP33.5■■■□□ 2.95
COL9A3-207ENST00000467819 PTPRKQ15262 1439 aa33.5■■■□□ 2.95
COL9A3-207ENST00000467819 LRRC9Q6ZRR7 1453 aa33.5■■■□□ 2.95
COL9A3-207ENST00000467819 ARHGEF5Q12774 1597 aa33.47■■■□□ 2.95
COL9A3-207ENST00000467819 PPP6R1Q9UPN7 881 aa33.46■■■□□ 2.95
COL9A3-207ENST00000467819 CEP170BQ9Y4F5 1589 aaPredicted RBP33.46■■■□□ 2.95
COL9A3-207ENST00000467819 RSPH4AQ5TD94 716 aa33.43■■■□□ 2.94
COL9A3-207ENST00000467819 KIF3BO15066 747 aa33.42■■■□□ 2.94
COL9A3-207ENST00000467819 LTBP4Q8N2S1 1624 aa33.39■■■□□ 2.93
COL9A3-207ENST00000467819 NCKAP5LQ9HCH0 1330 aa33.38■■■□□ 2.93
COL9A3-207ENST00000467819 MAP3K1Q13233 1512 aa33.37■■■□□ 2.93
COL9A3-207ENST00000467819 KDM5DQ9BY66 1539 aa33.37■■■□□ 2.93
COL9A3-207ENST00000467819 TSPY4P0CV99 314 aa33.35■■■□□ 2.93
COL9A3-207ENST00000467819 TSPY10P0CW01 314 aa33.35■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms