RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 ARHGEF40Q8TER5 1519 aa35.12■■■■□ 3.21
LIME1-203ENST00000465591 EFCAB2Q5VUJ9 269 aa35.12■■■■□ 3.21
LIME1-203ENST00000465591 ARHGAP5Q13017 1502 aa35.11■■■■□ 3.21
LIME1-203ENST00000465591 POGZQ7Z3K3 1410 aa35.09■■■■□ 3.21
LIME1-203ENST00000465591 PREX2Q70Z35 1606 aa35.07■■■■□ 3.21
LIME1-203ENST00000465591 YEATS2Q9ULM3 1422 aa35.05■■■■□ 3.2
LIME1-203ENST00000465591 CDC42BPAQ5VT25 1732 aa35.04■■■■□ 3.2
LIME1-203ENST00000465591 ZFYVE16Q7Z3T8 1539 aa35.02■■■■□ 3.2
LIME1-203ENST00000465591 ADAMTSL3P82987 1691 aa35.01■■■■□ 3.19
LIME1-203ENST00000465591 SIGLEC1Q9BZZ2 1709 aa35■■■■□ 3.19
LIME1-203ENST00000465591 BCORL1Q5H9F3 1711 aa34.98■■■■□ 3.19
LIME1-203ENST00000465591 MAGI2Q86UL8 1455 aa34.98■■■■□ 3.19
LIME1-203ENST00000465591 ARID4BQ4LE39 1312 aaPredicted RBP34.94■■■■□ 3.18
LIME1-203ENST00000465591 ABCC1P33527 1531 aa34.92■■■■□ 3.18
LIME1-203ENST00000465591 ARHGEF12Q9NZN5 1544 aa34.92■■■■□ 3.18
LIME1-203ENST00000465591 KDM5CP41229 1560 aa34.91■■■■□ 3.18
LIME1-203ENST00000465591 ZNF518AQ6AHZ1 1483 aa34.91■■■■□ 3.18
LIME1-203ENST00000465591 AFAP1Q8N556 730 aa34.91■■■■□ 3.18
LIME1-203ENST00000465591 GPATCH8Q9UKJ3 1502 aaKnown RBP34.91■■■■□ 3.18
LIME1-203ENST00000465591 MTUS2Q5JR59 1369 aa34.89■■■■□ 3.18
LIME1-203ENST00000465591 ITSN2Q9NZM3 1697 aa34.89■■■■□ 3.18
LIME1-203ENST00000465591 MADDQ8WXG6 1647 aa34.88■■■■□ 3.17
LIME1-203ENST00000465591 TRAPPC8Q9Y2L5 1435 aa34.86■■■■□ 3.17
LIME1-203ENST00000465591 SAMD9LQ8IVG5 1584 aa34.84■■■■□ 3.17
LIME1-203ENST00000465591 PTPRMP28827 1452 aa34.84■■■■□ 3.17
LIME1-203ENST00000465591 EHBP1L1Q8N3D4 1523 aa34.83■■■■□ 3.17
LIME1-203ENST00000465591 ATP10AO60312 1499 aa34.83■■■■□ 3.17
LIME1-203ENST00000465591 HECW2Q9P2P5 1572 aa34.82■■■■□ 3.16
LIME1-203ENST00000465591 VPS8Q8N3P4 1428 aa34.8■■■■□ 3.16
LIME1-203ENST00000465591 ZNF777Q9ULD5 760 aaPredicted RBP34.79■■■■□ 3.16
LIME1-203ENST00000465591 CCNB3Q8WWL7 1395 aa34.78■■■■□ 3.16
LIME1-203ENST00000465591 C9orf84Q5VXU9 1444 aa34.78■■■■□ 3.16
LIME1-203ENST00000465591 RIMS1Q86UR5 1692 aaKnown RBP34.77■■■■□ 3.16
LIME1-203ENST00000465591 TIAM1Q13009 1591 aa34.77■■■■□ 3.16
LIME1-203ENST00000465591 DIP2CQ9Y2E4 1556 aa34.77■■■■□ 3.16
LIME1-203ENST00000465591 MLH3Q9UHC1 1453 aa34.76■■■■□ 3.15
LIME1-203ENST00000465591 SYCP2Q9BX26 1530 aa34.76■■■■□ 3.15
LIME1-203ENST00000465591 ABCA6Q8N139 1617 aa34.75■■■■□ 3.15
LIME1-203ENST00000465591 CFDP1Q9UEE9 299 aaPredicted RBP34.72■■■■□ 3.15
LIME1-203ENST00000465591 MLECQ14165 292 aa34.71■■■■□ 3.15
LIME1-203ENST00000465591 KIDINS220Q9ULH0 1771 aa34.71■■■■□ 3.15
LIME1-203ENST00000465591 MYT1LQ9UL68 1186 aa34.7■■■■□ 3.15
LIME1-203ENST00000465591 HNRNPMP52272 730 aaKnown RBP eCLIP34.68■■■■□ 3.14
LIME1-203ENST00000465591 FER1L4A9Z1Z3 1794 aa34.66■■■■□ 3.14
LIME1-203ENST00000465591 SUPT6HQ7KZ85 1726 aaKnown RBP34.65■■■■□ 3.14
LIME1-203ENST00000465591 REREQ9P2R6 1566 aa34.65■■■■□ 3.14
LIME1-203ENST00000465591 NCOA2Q15596 1464 aa34.65■■■■□ 3.14
LIME1-203ENST00000465591 KIAA1107Q9UPP5 1409 aa34.64■■■■□ 3.14
LIME1-203ENST00000465591 ZNF644Q9H582 1327 aaPredicted RBP34.63■■■■□ 3.13
LIME1-203ENST00000465591 PLEKHH2Q8IVE3 1493 aa34.62■■■■□ 3.13
LIME1-203ENST00000465591 LRRC9Q6ZRR7 1453 aa34.58■■■■□ 3.13
LIME1-203ENST00000465591 SPAG9O60271 1321 aaKnown RBP34.55■■■■□ 3.12
LIME1-203ENST00000465591 INO80Q9ULG1 1556 aaPredicted RBP34.54■■■■□ 3.12
LIME1-203ENST00000465591 AGLP35573 1532 aa34.54■■■■□ 3.12
LIME1-203ENST00000465591 MAP3K1Q13233 1512 aa34.54■■■■□ 3.12
LIME1-203ENST00000465591 MBD5Q9P267 1494 aa34.53■■■■□ 3.12
LIME1-203ENST00000465591 KANK4Q5T7N3 995 aaPredicted RBP34.53■■■■□ 3.12
LIME1-203ENST00000465591 PLPPR3Q6T4P5 718 aa34.53■■■■□ 3.12
LIME1-203ENST00000465591 ATP7AQ04656 1500 aa34.53■■■■□ 3.12
LIME1-203ENST00000465591 CAMSAP2Q08AD1 1489 aa34.46■■■■□ 3.11
LIME1-203ENST00000465591 LMTK3Q96Q04 1460 aa34.46■■■■□ 3.11
LIME1-203ENST00000465591 PLXNC1O60486 1568 aa34.4■■■■□ 3.1
LIME1-203ENST00000465591 CEBPAP49715 358 aaPredicted RBP34.4■■■■□ 3.1
LIME1-203ENST00000465591 A2MP01023 1474 aa34.38■■■■□ 3.09
LIME1-203ENST00000465591 CCDC141Q6ZP82 1450 aa34.35■■■■□ 3.09
LIME1-203ENST00000465591 ADGBQ8N7X0 1667 aa34.35■■■■□ 3.09
LIME1-203ENST00000465591 C3P01024 1663 aa34.33■■■■□ 3.09
LIME1-203ENST00000465591 RTEL1-TNFRSF6BF6WH68 1400 aa34.32■■■■□ 3.08
LIME1-203ENST00000465591 ARHGEF5Q12774 1597 aa34.31■■■■□ 3.08
LIME1-203ENST00000465591 MYOM3Q5VTT5 1437 aa34.3■■■■□ 3.08
LIME1-203ENST00000465591 HSPA2P54652 639 aa34.28■■■■□ 3.08
LIME1-203ENST00000465591 PREX1Q8TCU6 1659 aa34.25■■■■□ 3.07
LIME1-203ENST00000465591 APLP2Q06481 763 aa34.25■■■■□ 3.07
LIME1-203ENST00000465591 MIA2Q96PC5 1412 aa34.23■■■■□ 3.07
LIME1-203ENST00000465591 RSPH4AQ5TD94 716 aa34.23■■■■□ 3.07
LIME1-203ENST00000465591 SETD1BQ9UPS6 1966 aaKnown RBP34.22■■■■□ 3.07
LIME1-203ENST00000465591 ESF1Q9H501 851 aaKnown RBP34.22■■■■□ 3.07
LIME1-203ENST00000465591 CNTLNQ9NXG0 1405 aa34.21■■■■□ 3.07
LIME1-203ENST00000465591 MROH2AA6NES4 1674 aa34.19■■■■□ 3.06
LIME1-203ENST00000465591 CLTCQ00610 1675 aaKnown RBP34.19■■■■□ 3.06
LIME1-203ENST00000465591 DHX29Q7Z478 1369 aaKnown RBP34.19■■■■□ 3.06
LIME1-203ENST00000465591 GGT6Q6P531 493 aa34.17■■■■□ 3.06
LIME1-203ENST00000465591 MAST1Q9Y2H9 1570 aa34.14■■■■□ 3.06
LIME1-203ENST00000465591 ZMYM3Q14202 1370 aa34.12■■■■□ 3.05
LIME1-203ENST00000465591 TSPY4P0CV99 314 aa34.12■■■■□ 3.05
LIME1-203ENST00000465591 TSPY10P0CW01 314 aa34.12■■■■□ 3.05
LIME1-203ENST00000465591 PTPN23Q9H3S7 1636 aa34.11■■■■□ 3.05
LIME1-203ENST00000465591 UHRF1BP1Q6BDS2 1440 aa34.1■■■■□ 3.05
LIME1-203ENST00000465591 KIF3BO15066 747 aa34.06■■■■□ 3.04
LIME1-203ENST00000465591 FGD6Q6ZV73 1430 aa34.05■■■■□ 3.04
LIME1-203ENST00000465591 NPATQ14207 1427 aa34.03■■■■□ 3.04
LIME1-203ENST00000465591 PPP6R1Q9UPN7 881 aa34.02■■■■□ 3.04
LIME1-203ENST00000465591 CROCC2H7BZ55 1655 aa34.02■■■■□ 3.04
LIME1-203ENST00000465591 TCOF1Q13428 1488 aaKnown RBP34.01■■■■□ 3.04
LIME1-203ENST00000465591 ABCC5O15440 1437 aa34.01■■■■□ 3.03
LIME1-203ENST00000465591 STRCQ7RTU9 1775 aa34■■■■□ 3.03
LIME1-203ENST00000465591 PTPRKQ15262 1439 aa33.99■■■■□ 3.03
LIME1-203ENST00000465591 DNMT1P26358 1616 aaKnown RBP33.96■■■■□ 3.03
LIME1-203ENST00000465591 SHANK2Q9UPX8 1470 aa33.95■■■■□ 3.02
LIME1-203ENST00000465591 DAPK1P53355 1430 aa33.94■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms