RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 MYO5CQ9NQX4 1742 aa23.5■■□□□ 1.35
TMEM39A-203ENST00000461654 ZMYM4Q5VZL5 1548 aa23.5■■□□□ 1.35
TMEM39A-203ENST00000461654 MAGI2Q86UL8 1455 aa23.49■■□□□ 1.35
TMEM39A-203ENST00000461654 POGZQ7Z3K3 1410 aa23.47■■□□□ 1.35
TMEM39A-203ENST00000461654 PPARGC1BQ86YN6 1023 aaKnown RBP23.46■■□□□ 1.35
TMEM39A-203ENST00000461654 ARHGEF40Q8TER5 1519 aa23.45■■□□□ 1.34
TMEM39A-203ENST00000461654 MAP3K1Q13233 1512 aa23.44■■□□□ 1.34
TMEM39A-203ENST00000461654 ARHGAP5Q13017 1502 aa23.43■■□□□ 1.34
TMEM39A-203ENST00000461654 ZFYVE16Q7Z3T8 1539 aa23.41■■□□□ 1.34
TMEM39A-203ENST00000461654 ADAMTSL3P82987 1691 aa23.41■■□□□ 1.34
TMEM39A-203ENST00000461654 YEATS2Q9ULM3 1422 aa23.4■■□□□ 1.34
TMEM39A-203ENST00000461654 TIAM1Q13009 1591 aa23.4■■□□□ 1.34
TMEM39A-203ENST00000461654 ARID4BQ4LE39 1312 aaPredicted RBP23.39■■□□□ 1.34
TMEM39A-203ENST00000461654 CDC42BPBQ9Y5S2 1711 aa23.38■■□□□ 1.33
TMEM39A-203ENST00000461654 ZNF518AQ6AHZ1 1483 aa23.37■■□□□ 1.33
TMEM39A-203ENST00000461654 PREX2Q70Z35 1606 aa23.37■■□□□ 1.33
TMEM39A-203ENST00000461654 BCORL1Q5H9F3 1711 aa23.36■■□□□ 1.33
TMEM39A-203ENST00000461654 AFAP1Q8N556 730 aa23.35■■□□□ 1.33
TMEM39A-203ENST00000461654 ATP10AO60312 1499 aa23.34■■□□□ 1.33
TMEM39A-203ENST00000461654 KDM5CP41229 1560 aa23.33■■□□□ 1.33
TMEM39A-203ENST00000461654 PTPRMP28827 1452 aa23.33■■□□□ 1.33
TMEM39A-203ENST00000461654 GPATCH8Q9UKJ3 1502 aaKnown RBP23.33■■□□□ 1.32
TMEM39A-203ENST00000461654 KANK4Q5T7N3 995 aaPredicted RBP23.32■■□□□ 1.32
TMEM39A-203ENST00000461654 TRIM26Q12899 539 aaPredicted RBP23.31■■□□□ 1.32
TMEM39A-203ENST00000461654 CDC42BPAQ5VT25 1732 aa23.3■■□□□ 1.32
TMEM39A-203ENST00000461654 LRRC9Q6ZRR7 1453 aa23.3■■□□□ 1.32
TMEM39A-203ENST00000461654 MTUS2Q5JR59 1369 aa23.3■■□□□ 1.32
TMEM39A-203ENST00000461654 ABCC1P33527 1531 aa23.3■■□□□ 1.32
TMEM39A-203ENST00000461654 ARHGEF12Q9NZN5 1544 aa23.3■■□□□ 1.32
TMEM39A-203ENST00000461654 MLH3Q9UHC1 1453 aa23.3■■□□□ 1.32
TMEM39A-203ENST00000461654 C9orf84Q5VXU9 1444 aa23.28■■□□□ 1.32
TMEM39A-203ENST00000461654 TRAPPC8Q9Y2L5 1435 aa23.27■■□□□ 1.32
TMEM39A-203ENST00000461654 MADDQ8WXG6 1647 aa23.26■■□□□ 1.31
TMEM39A-203ENST00000461654 SIGLEC1Q9BZZ2 1709 aa23.26■■□□□ 1.31
TMEM39A-203ENST00000461654 HECW2Q9P2P5 1572 aa23.25■■□□□ 1.31
TMEM39A-203ENST00000461654 CCNB3Q8WWL7 1395 aa23.25■■□□□ 1.31
TMEM39A-203ENST00000461654 CFDP1Q9UEE9 299 aaPredicted RBP23.24■■□□□ 1.31
TMEM39A-203ENST00000461654 KIAA1107Q9UPP5 1409 aa23.24■■□□□ 1.31
TMEM39A-203ENST00000461654 EHBP1L1Q8N3D4 1523 aa23.23■■□□□ 1.31
TMEM39A-203ENST00000461654 ITSN2Q9NZM3 1697 aa23.22■■□□□ 1.31
TMEM39A-203ENST00000461654 ZNF777Q9ULD5 760 aaPredicted RBP23.22■■□□□ 1.31
TMEM39A-203ENST00000461654 PLEKHH2Q8IVE3 1493 aa23.21■■□□□ 1.31
TMEM39A-203ENST00000461654 SAMD9LQ8IVG5 1584 aa23.21■■□□□ 1.31
TMEM39A-203ENST00000461654 REREQ9P2R6 1566 aa23.21■■□□□ 1.31
TMEM39A-203ENST00000461654 MYT1LQ9UL68 1186 aa23.2■■□□□ 1.3
TMEM39A-203ENST00000461654 DIP2CQ9Y2E4 1556 aa23.18■■□□□ 1.3
TMEM39A-203ENST00000461654 MLECQ14165 292 aa23.18■■□□□ 1.3
TMEM39A-203ENST00000461654 HNRNPMP52272 730 aaKnown RBP eCLIP23.17■■□□□ 1.38e-7■■■□□ 16.7
TMEM39A-203ENST00000461654 RIMS1Q86UR5 1692 aaKnown RBP23.16■■□□□ 1.3
TMEM39A-203ENST00000461654 PCGF6Q9BYE7 350 aa23.16■■□□□ 1.3
TMEM39A-203ENST00000461654 AGLP35573 1532 aa23.15■■□□□ 1.3
TMEM39A-203ENST00000461654 ABCA6Q8N139 1617 aa23.15■■□□□ 1.3
TMEM39A-203ENST00000461654 SYCP2Q9BX26 1530 aa23.14■■□□□ 1.3
TMEM39A-203ENST00000461654 KIDINS220Q9ULH0 1771 aa23.14■■□□□ 1.29
TMEM39A-203ENST00000461654 SPAG9O60271 1321 aaKnown RBP23.12■■□□□ 1.29
TMEM39A-203ENST00000461654 SUPT6HQ7KZ85 1726 aaKnown RBP23.11■■□□□ 1.29
TMEM39A-203ENST00000461654 NCOA2Q15596 1464 aa23.1■■□□□ 1.29
TMEM39A-203ENST00000461654 ZNF644Q9H582 1327 aaPredicted RBP23.09■■□□□ 1.29
TMEM39A-203ENST00000461654 FER1L4A9Z1Z3 1794 aa23.09■■□□□ 1.29
TMEM39A-203ENST00000461654 MBD5Q9P267 1494 aa23.08■■□□□ 1.29
TMEM39A-203ENST00000461654 LMTK3Q96Q04 1460 aa23.07■■□□□ 1.28
TMEM39A-203ENST00000461654 RSPH4AQ5TD94 716 aa23.05■■□□□ 1.28
TMEM39A-203ENST00000461654 ATP7AQ04656 1500 aa23.04■■□□□ 1.28
TMEM39A-203ENST00000461654 INO80Q9ULG1 1556 aaPredicted RBP23.03■■□□□ 1.28
TMEM39A-203ENST00000461654 RTEL1-TNFRSF6BF6WH68 1400 aa23.02■■□□□ 1.28
TMEM39A-203ENST00000461654 RRBP1Q9P2E9 1410 aaKnown RBP23■■□□□ 1.27
TMEM39A-203ENST00000461654 PLPPR3Q6T4P5 718 aa23■■□□□ 1.27
TMEM39A-203ENST00000461654 A2MP01023 1474 aa22.99■■□□□ 1.27
TMEM39A-203ENST00000461654 CEBPAP49715 358 aaPredicted RBP22.99■■□□□ 1.27
TMEM39A-203ENST00000461654 MYOM3Q5VTT5 1437 aa22.99■■□□□ 1.27
TMEM39A-203ENST00000461654 CNTLNQ9NXG0 1405 aa22.98■■□□□ 1.27
TMEM39A-203ENST00000461654 PLXNC1O60486 1568 aa22.97■■□□□ 1.27
TMEM39A-203ENST00000461654 ESF1Q9H501 851 aaKnown RBP22.97■■□□□ 1.27
TMEM39A-203ENST00000461654 CAMSAP2Q08AD1 1489 aa22.97■■□□□ 1.27
TMEM39A-203ENST00000461654 CCDC141Q6ZP82 1450 aa22.94■■□□□ 1.26
TMEM39A-203ENST00000461654 FGD6Q6ZV73 1430 aa22.94■■□□□ 1.26
TMEM39A-203ENST00000461654 PPP6R1Q9UPN7 881 aa22.93■■□□□ 1.26
TMEM39A-203ENST00000461654 FAM50AQ14320 339 aaKnown RBP22.92■■□□□ 1.26
TMEM39A-203ENST00000461654 ADGBQ8N7X0 1667 aa22.92■■□□□ 1.26
TMEM39A-203ENST00000461654 MIA2Q96PC5 1412 aa22.91■■□□□ 1.26
TMEM39A-203ENST00000461654 HSPA2P54652 639 aa22.91■■□□□ 1.26
TMEM39A-203ENST00000461654 ARHGEF5Q12774 1597 aa22.91■■□□□ 1.26
TMEM39A-203ENST00000461654 DHX29Q7Z478 1369 aaKnown RBP22.9■■□□□ 1.26
TMEM39A-203ENST00000461654 SETD1BQ9UPS6 1966 aaKnown RBP22.89■■□□□ 1.26
TMEM39A-203ENST00000461654 TSPY4P0CV99 314 aa22.89■■□□□ 1.25
TMEM39A-203ENST00000461654 TSPY10P0CW01 314 aa22.89■■□□□ 1.25
TMEM39A-203ENST00000461654 C3P01024 1663 aa22.89■■□□□ 1.25
TMEM39A-203ENST00000461654 PREX1Q8TCU6 1659 aa22.89■■□□□ 1.25
TMEM39A-203ENST00000461654 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.89■■□□□ 1.25
TMEM39A-203ENST00000461654 ZMYM3Q14202 1370 aa22.88■■□□□ 1.25
TMEM39A-203ENST00000461654 MROH2AA6NES4 1674 aa22.86■■□□□ 1.25
TMEM39A-203ENST00000461654 UHRF1BP1Q6BDS2 1440 aa22.85■■□□□ 1.25
TMEM39A-203ENST00000461654 GGT6Q6P531 493 aa22.85■■□□□ 1.25
TMEM39A-203ENST00000461654 NPATQ14207 1427 aa22.84■■□□□ 1.25
TMEM39A-203ENST00000461654 PTPN23Q9H3S7 1636 aa22.82■■□□□ 1.24
TMEM39A-203ENST00000461654 ITGAEP38570 1179 aa22.81■■□□□ 1.24
TMEM39A-203ENST00000461654 TCOF1Q13428 1488 aaKnown RBP22.8■■□□□ 1.24
TMEM39A-203ENST00000461654 MAST1Q9Y2H9 1570 aa22.8■■□□□ 1.24
TMEM39A-203ENST00000461654 KIF3BO15066 747 aa22.79■■□□□ 1.24
TMEM39A-203ENST00000461654 ILDR1Q86SU0 546 aaPredicted RBP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms