RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 AKNAQ7Z591 1439 aa16.77■□□□□ 0.28
UBR4-208ENST00000459947 CCNB3Q8WWL7 1395 aa16.77■□□□□ 0.27
UBR4-208ENST00000459947 LRRC9Q6ZRR7 1453 aa16.77■□□□□ 0.27
UBR4-208ENST00000459947 DENND4BO75064 1496 aaPredicted RBP16.76■□□□□ 0.27
UBR4-208ENST00000459947 CDC42BPAQ5VT25 1732 aa16.73■□□□□ 0.27
UBR4-208ENST00000459947 ADGRL1O94910 1474 aa16.73■□□□□ 0.27
UBR4-208ENST00000459947 CDC42BPBQ9Y5S2 1711 aa16.71■□□□□ 0.27
UBR4-208ENST00000459947 NCOA2Q15596 1464 aa16.71■□□□□ 0.27
UBR4-208ENST00000459947 MAGI2Q86UL8 1455 aa16.71■□□□□ 0.27
UBR4-208ENST00000459947 GPATCH8Q9UKJ3 1502 aaKnown RBP16.71■□□□□ 0.27
UBR4-208ENST00000459947 ZMYM4Q5VZL5 1548 aa16.7■□□□□ 0.26
UBR4-208ENST00000459947 KIAA1107Q9UPP5 1409 aa16.68■□□□□ 0.26
UBR4-208ENST00000459947 ABCC1P33527 1531 aa16.68■□□□□ 0.26
UBR4-208ENST00000459947 POGZQ7Z3K3 1410 aa16.68■□□□□ 0.26
UBR4-208ENST00000459947 ZNF518AQ6AHZ1 1483 aa16.68■□□□□ 0.26
UBR4-208ENST00000459947 SCAPERQ9BY12 1400 aa16.67■□□□□ 0.26
UBR4-208ENST00000459947 RICTORQ6R327 1708 aa16.67■□□□□ 0.26
UBR4-208ENST00000459947 CFDP1Q9UEE9 299 aaPredicted RBP16.67■□□□□ 0.26
UBR4-208ENST00000459947 COL17A1Q9UMD9 1497 aaPredicted RBP16.66■□□□□ 0.26
UBR4-208ENST00000459947 MIA2Q96PC5 1412 aa16.66■□□□□ 0.26
UBR4-208ENST00000459947 RSPH4AQ5TD94 716 aa16.64■□□□□ 0.25
UBR4-208ENST00000459947 FRMPD1Q5SYB0 1578 aa16.64■□□□□ 0.25
UBR4-208ENST00000459947 ARHGEF40Q8TER5 1519 aa16.63■□□□□ 0.25
UBR4-208ENST00000459947 MYOM3Q5VTT5 1437 aa16.62■□□□□ 0.25
UBR4-208ENST00000459947 KDM5CP41229 1560 aa16.62■□□□□ 0.25
UBR4-208ENST00000459947 SAMD9LQ8IVG5 1584 aa16.62■□□□□ 0.25
UBR4-208ENST00000459947 ZFYVE16Q7Z3T8 1539 aa16.61■□□□□ 0.25
UBR4-208ENST00000459947 HECW2Q9P2P5 1572 aa16.59■□□□□ 0.25
UBR4-208ENST00000459947 MLH3Q9UHC1 1453 aa16.59■□□□□ 0.25
UBR4-208ENST00000459947 ARHGEF5Q12774 1597 aa16.58■□□□□ 0.24
UBR4-208ENST00000459947 SYCP2Q9BX26 1530 aa16.57■□□□□ 0.24
UBR4-208ENST00000459947 KANK4Q5T7N3 995 aaPredicted RBP16.57■□□□□ 0.24
UBR4-208ENST00000459947 CAMSAP2Q08AD1 1489 aa16.56■□□□□ 0.24
UBR4-208ENST00000459947 ZNF777Q9ULD5 760 aaPredicted RBP16.56■□□□□ 0.24
UBR4-208ENST00000459947 RAPGEF3O95398 923 aa16.56■□□□□ 0.24
UBR4-208ENST00000459947 REREQ9P2R6 1566 aa16.56■□□□□ 0.24
UBR4-208ENST00000459947 CCDC141Q6ZP82 1450 aa16.54■□□□□ 0.24
UBR4-208ENST00000459947 RTEL1-TNFRSF6BF6WH68 1400 aa16.54■□□□□ 0.24
UBR4-208ENST00000459947 C9orf84Q5VXU9 1444 aa16.54■□□□□ 0.24
UBR4-208ENST00000459947 ATP10AO60312 1499 aa16.53■□□□□ 0.24
UBR4-208ENST00000459947 TCOF1Q13428 1488 aaKnown RBP16.52■□□□□ 0.24
UBR4-208ENST00000459947 TRAPPC8Q9Y2L5 1435 aa16.52■□□□□ 0.23
UBR4-208ENST00000459947 ARHGEF12Q9NZN5 1544 aa16.52■□□□□ 0.23
UBR4-208ENST00000459947 FGD6Q6ZV73 1430 aa16.52■□□□□ 0.23
UBR4-208ENST00000459947 SPAG9O60271 1321 aaKnown RBP16.51■□□□□ 0.23
UBR4-208ENST00000459947 PTPN23Q9H3S7 1636 aa16.5■□□□□ 0.23
UBR4-208ENST00000459947 INO80Q9ULG1 1556 aaPredicted RBP16.5■□□□□ 0.23
UBR4-208ENST00000459947 MBD5Q9P267 1494 aa16.5■□□□□ 0.23
UBR4-208ENST00000459947 ATP7AQ04656 1500 aa16.5■□□□□ 0.23
UBR4-208ENST00000459947 MAST1Q9Y2H9 1570 aa16.5■□□□□ 0.23
UBR4-208ENST00000459947 MYT1LQ9UL68 1186 aa16.49■□□□□ 0.23
UBR4-208ENST00000459947 SHANK2Q9UPX8 1470 aa16.48■□□□□ 0.23
UBR4-208ENST00000459947 AGLP35573 1532 aa16.48■□□□□ 0.23
UBR4-208ENST00000459947 DIP2CQ9Y2E4 1556 aa16.48■□□□□ 0.23
UBR4-208ENST00000459947 ADGBQ8N7X0 1667 aa16.48■□□□□ 0.23
UBR4-208ENST00000459947 TSPY4P0CV99 314 aa16.47■□□□□ 0.23
UBR4-208ENST00000459947 TSPY10P0CW01 314 aa16.47■□□□□ 0.23
UBR4-208ENST00000459947 HNRNPMP52272 730 aaKnown RBP eCLIP16.46■□□□□ 0.23
UBR4-208ENST00000459947 AFAP1Q8N556 730 aa16.46■□□□□ 0.23
UBR4-208ENST00000459947 KIDINS220Q9ULH0 1771 aa16.46■□□□□ 0.23
UBR4-208ENST00000459947 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.46■□□□□ 0.23
UBR4-208ENST00000459947 YEATS2Q9ULM3 1422 aa16.45■□□□□ 0.22
UBR4-208ENST00000459947 ABCA6Q8N139 1617 aa16.45■□□□□ 0.22
UBR4-208ENST00000459947 DNMT1P26358 1616 aaKnown RBP16.44■□□□□ 0.22
UBR4-208ENST00000459947 BCORL1Q5H9F3 1711 aa16.42■□□□□ 0.22
UBR4-208ENST00000459947 CROCC2H7BZ55 1655 aa16.42■□□□□ 0.22
UBR4-208ENST00000459947 PLXNC1O60486 1568 aa16.42■□□□□ 0.22
UBR4-208ENST00000459947 FAM135AQ9P2D6 1515 aa16.41■□□□□ 0.22
UBR4-208ENST00000459947 ZNF644Q9H582 1327 aaPredicted RBP16.41■□□□□ 0.22
UBR4-208ENST00000459947 ARID4BQ4LE39 1312 aaPredicted RBP16.41■□□□□ 0.22
UBR4-208ENST00000459947 A2MP01023 1474 aa16.41■□□□□ 0.22
UBR4-208ENST00000459947 ADAMTSL3P82987 1691 aa16.39■□□□□ 0.21
UBR4-208ENST00000459947 DAPK1P53355 1430 aa16.39■□□□□ 0.21
UBR4-208ENST00000459947 PPP6R1Q9UPN7 881 aa16.39■□□□□ 0.21
UBR4-208ENST00000459947 DHX29Q7Z478 1369 aaKnown RBP16.37■□□□□ 0.21
UBR4-208ENST00000459947 CNTLNQ9NXG0 1405 aa16.36■□□□□ 0.21
UBR4-208ENST00000459947 EIF2AK4Q9P2K8 1649 aaKnown RBP16.36■□□□□ 0.21
UBR4-208ENST00000459947 ABCC5O15440 1437 aa16.36■□□□□ 0.21
UBR4-208ENST00000459947 ANKRD30AQ9BXX3 1397 aa16.36■□□□□ 0.21
UBR4-208ENST00000459947 DUOX2Q9NRD8 1548 aa16.35■□□□□ 0.21
UBR4-208ENST00000459947 RRBP1Q9P2E9 1410 aaKnown RBP16.35■□□□□ 0.21
UBR4-208ENST00000459947 ADGRL2O95490 1459 aa16.35■□□□□ 0.21
UBR4-208ENST00000459947 AEBP2Q6ZN18 517 aaPredicted RBP16.34■□□□□ 0.21
UBR4-208ENST00000459947 FAM50AQ14320 339 aaKnown RBP16.33■□□□□ 0.21
UBR4-208ENST00000459947 ESF1Q9H501 851 aaKnown RBP16.32■□□□□ 0.2
UBR4-208ENST00000459947 ERBINQ96RT1 1412 aa16.32■□□□□ 0.2
UBR4-208ENST00000459947 FER1L4A9Z1Z3 1794 aa16.32■□□□□ 0.2
UBR4-208ENST00000459947 ROCK1Q13464 1354 aa16.3■□□□□ 0.2
UBR4-208ENST00000459947 MADDQ8WXG6 1647 aa16.3■□□□□ 0.2
UBR4-208ENST00000459947 KDM4FA0A1W2PPD8 638 aa16.3■□□□□ 0.2
UBR4-208ENST00000459947 MROH2AA6NES4 1674 aa16.29■□□□□ 0.2
UBR4-208ENST00000459947 KIF15Q9NS87 1388 aa16.28■□□□□ 0.2
UBR4-208ENST00000459947 RNF17Q9BXT8 1623 aaKnown RBP16.28■□□□□ 0.2
UBR4-208ENST00000459947 RIMS1Q86UR5 1692 aaKnown RBP16.27■□□□□ 0.2
UBR4-208ENST00000459947 SIGLEC1Q9BZZ2 1709 aa16.26■□□□□ 0.19
UBR4-208ENST00000459947 ZC3H13Q5T200 1668 aaKnown RBP16.25■□□□□ 0.19
UBR4-208ENST00000459947 PTPRMP28827 1452 aa16.25■□□□□ 0.19
UBR4-208ENST00000459947 ACIN1Q9UKV3 1341 aaKnown RBP16.25■□□□□ 0.19
UBR4-208ENST00000459947 NCOA1Q15788 1441 aa16.25■□□□□ 0.19
UBR4-208ENST00000459947 KDM5DQ9BY66 1539 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms