RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 POGZQ7Z3K3 1410 aa28.76■■■□□ 2.19
MSH6-207ENST00000456246 SCAPERQ9BY12 1400 aa28.76■■■□□ 2.19
MSH6-207ENST00000456246 ARHGAP5Q13017 1502 aa28.75■■■□□ 2.19
MSH6-207ENST00000456246 ZFYVE16Q7Z3T8 1539 aa28.71■■■□□ 2.19
MSH6-207ENST00000456246 PREX2Q70Z35 1606 aa28.7■■■□□ 2.19
MSH6-207ENST00000456246 ZNF518AQ6AHZ1 1483 aa28.66■■■□□ 2.18
MSH6-207ENST00000456246 CDC42BPBQ9Y5S2 1711 aa28.66■■■□□ 2.18
MSH6-207ENST00000456246 ADAMTSL3P82987 1691 aa28.65■■■□□ 2.18
MSH6-207ENST00000456246 BCORL1Q5H9F3 1711 aa28.64■■■□□ 2.18
MSH6-207ENST00000456246 ARID4BQ4LE39 1312 aaPredicted RBP28.64■■■□□ 2.17
MSH6-207ENST00000456246 YEATS2Q9ULM3 1422 aa28.61■■■□□ 2.17
MSH6-207ENST00000456246 CDC42BPAQ5VT25 1732 aa28.6■■■□□ 2.17
MSH6-207ENST00000456246 KDM5CP41229 1560 aa28.6■■■□□ 2.17
MSH6-207ENST00000456246 MTUS2Q5JR59 1369 aa28.6■■■□□ 2.17
MSH6-207ENST00000456246 ABCC1P33527 1531 aa28.59■■■□□ 2.17
MSH6-207ENST00000456246 EHBP1L1Q8N3D4 1523 aa28.54■■■□□ 2.16
MSH6-207ENST00000456246 ATP10AO60312 1499 aa28.54■■■□□ 2.16
MSH6-207ENST00000456246 PTPRMP28827 1452 aa28.54■■■□□ 2.16
MSH6-207ENST00000456246 HECW2Q9P2P5 1572 aa28.54■■■□□ 2.16
MSH6-207ENST00000456246 C9orf84Q5VXU9 1444 aa28.53■■■□□ 2.16
MSH6-207ENST00000456246 GPATCH8Q9UKJ3 1502 aaKnown RBP28.53■■■□□ 2.16
MSH6-207ENST00000456246 ITSN2Q9NZM3 1697 aa28.52■■■□□ 2.16
MSH6-207ENST00000456246 MADDQ8WXG6 1647 aa28.52■■■□□ 2.16
MSH6-207ENST00000456246 LOC105371045A0A1W2PR82 267 aa28.5■■■□□ 2.15
MSH6-207ENST00000456246 AFAP1Q8N556 730 aa28.5■■■□□ 2.15
MSH6-207ENST00000456246 MLH3Q9UHC1 1453 aa28.5■■■□□ 2.15
MSH6-207ENST00000456246 CCNB3Q8WWL7 1395 aa28.5■■■□□ 2.15
MSH6-207ENST00000456246 ARHGEF12Q9NZN5 1544 aa28.48■■■□□ 2.15
MSH6-207ENST00000456246 PLEKHH2Q8IVE3 1493 aa28.47■■■□□ 2.15
MSH6-207ENST00000456246 SIGLEC1Q9BZZ2 1709 aa28.46■■■□□ 2.15
MSH6-207ENST00000456246 VPS8Q8N3P4 1428 aa28.46■■■□□ 2.15
MSH6-207ENST00000456246 TRAPPC8Q9Y2L5 1435 aa28.46■■■□□ 2.15
MSH6-207ENST00000456246 SAMD9LQ8IVG5 1584 aa28.45■■■□□ 2.15
MSH6-207ENST00000456246 REREQ9P2R6 1566 aa28.45■■■□□ 2.14
MSH6-207ENST00000456246 CFDP1Q9UEE9 299 aaPredicted RBP28.44■■■□□ 2.14
MSH6-207ENST00000456246 MYT1LQ9UL68 1186 aa28.44■■■□□ 2.14
MSH6-207ENST00000456246 DIP2CQ9Y2E4 1556 aa28.43■■■□□ 2.14
MSH6-207ENST00000456246 KIAA1107Q9UPP5 1409 aa28.43■■■□□ 2.14
MSH6-207ENST00000456246 RIMS1Q86UR5 1692 aaKnown RBP28.42■■■□□ 2.14
MSH6-207ENST00000456246 ZNF777Q9ULD5 760 aaPredicted RBP28.42■■■□□ 2.14
MSH6-207ENST00000456246 SYCP2Q9BX26 1530 aa28.41■■■□□ 2.14
MSH6-207ENST00000456246 TIAM1Q13009 1591 aa28.41■■■□□ 2.14
MSH6-207ENST00000456246 ABCA6Q8N139 1617 aa28.4■■■□□ 2.14
MSH6-207ENST00000456246 SUPT6HQ7KZ85 1726 aaKnown RBP28.38■■■□□ 2.13
MSH6-207ENST00000456246 FER1L4A9Z1Z3 1794 aa28.37■■■□□ 2.13
MSH6-207ENST00000456246 KIDINS220Q9ULH0 1771 aa28.35■■■□□ 2.13
MSH6-207ENST00000456246 AGLP35573 1532 aa28.34■■■□□ 2.13
MSH6-207ENST00000456246 MLECQ14165 292 aa28.34■■■□□ 2.13
MSH6-207ENST00000456246 MAP3K1Q13233 1512 aa28.33■■■□□ 2.13
MSH6-207ENST00000456246 NCOA2Q15596 1464 aa28.32■■■□□ 2.12
MSH6-207ENST00000456246 SPAG9O60271 1321 aaKnown RBP28.31■■■□□ 2.12
MSH6-207ENST00000456246 HNRNPMP52272 730 aaKnown RBP eCLIP28.3■■■□□ 2.12
MSH6-207ENST00000456246 ATP7AQ04656 1500 aa28.28■■■□□ 2.12
MSH6-207ENST00000456246 LRRC9Q6ZRR7 1453 aa28.27■■■□□ 2.12
MSH6-207ENST00000456246 INO80Q9ULG1 1556 aaPredicted RBP28.26■■■□□ 2.11
MSH6-207ENST00000456246 MBD5Q9P267 1494 aa28.22■■■□□ 2.11
MSH6-207ENST00000456246 LMTK3Q96Q04 1460 aa28.21■■■□□ 2.11
MSH6-207ENST00000456246 ZNF644Q9H582 1327 aaPredicted RBP28.19■■■□□ 2.1
MSH6-207ENST00000456246 CAMSAP2Q08AD1 1489 aa28.18■■■□□ 2.1
MSH6-207ENST00000456246 RTEL1-TNFRSF6BF6WH68 1400 aa28.18■■■□□ 2.1
MSH6-207ENST00000456246 RSPH4AQ5TD94 716 aa28.17■■■□□ 2.1
MSH6-207ENST00000456246 PLXNC1O60486 1568 aa28.16■■■□□ 2.1
MSH6-207ENST00000456246 A2MP01023 1474 aa28.16■■■□□ 2.1
MSH6-207ENST00000456246 ESF1Q9H501 851 aaKnown RBP28.16■■■□□ 2.1
MSH6-207ENST00000456246 CNTLNQ9NXG0 1405 aa28.16■■■□□ 2.1
MSH6-207ENST00000456246 CCDC141Q6ZP82 1450 aa28.15■■■□□ 2.1
MSH6-207ENST00000456246 PLPPR3Q6T4P5 718 aa28.15■■■□□ 2.1
MSH6-207ENST00000456246 ADGBQ8N7X0 1667 aa28.15■■■□□ 2.1
MSH6-207ENST00000456246 APLP2Q06481 763 aa28.13■■■□□ 2.09
MSH6-207ENST00000456246 ARHGEF5Q12774 1597 aa28.11■■■□□ 2.09
MSH6-207ENST00000456246 PREX1Q8TCU6 1659 aa28.1■■■□□ 2.09
MSH6-207ENST00000456246 KANK4Q5T7N3 995 aaPredicted RBP28.09■■■□□ 2.09
MSH6-207ENST00000456246 MIA2Q96PC5 1412 aa28.09■■■□□ 2.09
MSH6-207ENST00000456246 SETD1BQ9UPS6 1966 aaKnown RBP28.07■■■□□ 2.08
MSH6-207ENST00000456246 MYOM3Q5VTT5 1437 aa28.07■■■□□ 2.08
MSH6-207ENST00000456246 MROH2AA6NES4 1674 aa28.06■■■□□ 2.08
MSH6-207ENST00000456246 C3P01024 1663 aa28.06■■■□□ 2.08
MSH6-207ENST00000456246 CEBPAP49715 358 aaPredicted RBP28.05■■■□□ 2.08
MSH6-207ENST00000456246 PPP6R1Q9UPN7 881 aa28.02■■■□□ 2.08
MSH6-207ENST00000456246 UHRF1BP1Q6BDS2 1440 aa28.01■■■□□ 2.08
MSH6-207ENST00000456246 DHX29Q7Z478 1369 aaKnown RBP28.01■■■□□ 2.07
MSH6-207ENST00000456246 TSPY4P0CV99 314 aa28.01■■■□□ 2.07
MSH6-207ENST00000456246 TSPY10P0CW01 314 aa28.01■■■□□ 2.07
MSH6-207ENST00000456246 HSPA2P54652 639 aa27.98■■■□□ 2.07
MSH6-207ENST00000456246 MAST1Q9Y2H9 1570 aa27.97■■■□□ 2.07
MSH6-207ENST00000456246 NPATQ14207 1427 aa27.96■■■□□ 2.07
MSH6-207ENST00000456246 GGT6Q6P531 493 aa27.95■■■□□ 2.06
MSH6-207ENST00000456246 ZMYM3Q14202 1370 aa27.94■■■□□ 2.06
MSH6-207ENST00000456246 CLTCQ00610 1675 aaKnown RBP27.94■■■□□ 2.06
MSH6-207ENST00000456246 FAM135AQ9P2D6 1515 aa27.93■■■□□ 2.06
MSH6-207ENST00000456246 KIF3BO15066 747 aa27.87■■■□□ 2.05
MSH6-207ENST00000456246 PTPN23Q9H3S7 1636 aa27.87■■■□□ 2.05
MSH6-207ENST00000456246 FGD6Q6ZV73 1430 aa27.85■■■□□ 2.05
MSH6-207ENST00000456246 SHANK2Q9UPX8 1470 aa27.84■■■□□ 2.05
MSH6-207ENST00000456246 KDM5DQ9BY66 1539 aa27.84■■■□□ 2.05
MSH6-207ENST00000456246 TCOF1Q13428 1488 aaKnown RBP27.83■■■□□ 2.04
MSH6-207ENST00000456246 PTPRKQ15262 1439 aa27.82■■■□□ 2.04
MSH6-207ENST00000456246 EIF2AK4Q9P2K8 1649 aaKnown RBP27.81■■■□□ 2.04
MSH6-207ENST00000456246 DMRT2Q9Y5R5 561 aa27.81■■■□□ 2.04
MSH6-207ENST00000456246 CROCC2H7BZ55 1655 aa27.8■■■□□ 2.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms