RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 ARHGEF40Q8TER5 1519 aa34.15■■■■□ 3.06
HMGB3-205ENST00000455596 SCAPERQ9BY12 1400 aa34.13■■■■□ 3.05
HMGB3-205ENST00000455596 PREX2Q70Z35 1606 aa34.13■■■■□ 3.05
HMGB3-205ENST00000455596 CDC42BPAQ5VT25 1732 aa34.1■■■■□ 3.05
HMGB3-205ENST00000455596 POGZQ7Z3K3 1410 aa34.09■■■■□ 3.05
HMGB3-205ENST00000455596 ZFYVE16Q7Z3T8 1539 aa34.06■■■■□ 3.04
HMGB3-205ENST00000455596 MAGI2Q86UL8 1455 aa34.06■■■■□ 3.04
HMGB3-205ENST00000455596 BCORL1Q5H9F3 1711 aa34.04■■■■□ 3.04
HMGB3-205ENST00000455596 LOC105371045A0A1W2PR82 267 aa34.03■■■■□ 3.04
HMGB3-205ENST00000455596 ADAMTSL3P82987 1691 aa34.03■■■■□ 3.04
HMGB3-205ENST00000455596 YEATS2Q9ULM3 1422 aa33.98■■■■□ 3.03
HMGB3-205ENST00000455596 ZNF518AQ6AHZ1 1483 aa33.98■■■■□ 3.03
HMGB3-205ENST00000455596 ARID4BQ4LE39 1312 aaPredicted RBP33.98■■■■□ 3.03
HMGB3-205ENST00000455596 ITSN2Q9NZM3 1697 aa33.96■■■■□ 3.03
HMGB3-205ENST00000455596 MTUS2Q5JR59 1369 aa33.95■■■■□ 3.02
HMGB3-205ENST00000455596 ABCC1P33527 1531 aa33.94■■■■□ 3.02
HMGB3-205ENST00000455596 KDM5CP41229 1560 aa33.94■■■■□ 3.02
HMGB3-205ENST00000455596 SIGLEC1Q9BZZ2 1709 aa33.93■■■■□ 3.02
HMGB3-205ENST00000455596 EHBP1L1Q8N3D4 1523 aa33.9■■■■□ 3.02
HMGB3-205ENST00000455596 MADDQ8WXG6 1647 aa33.9■■■■□ 3.02
HMGB3-205ENST00000455596 HECW2Q9P2P5 1572 aa33.89■■■■□ 3.02
HMGB3-205ENST00000455596 GPATCH8Q9UKJ3 1502 aaKnown RBP33.89■■■■□ 3.02
HMGB3-205ENST00000455596 AFAP1Q8N556 730 aa33.86■■■■□ 3.01
HMGB3-205ENST00000455596 SAMD9LQ8IVG5 1584 aa33.85■■■■□ 3.01
HMGB3-205ENST00000455596 ARHGEF12Q9NZN5 1544 aa33.85■■■■□ 3.01
HMGB3-205ENST00000455596 ATP10AO60312 1499 aa33.85■■■■□ 3.01
HMGB3-205ENST00000455596 PTPRMP28827 1452 aa33.83■■■■□ 3.01
HMGB3-205ENST00000455596 C9orf84Q5VXU9 1444 aa33.83■■■■□ 3.01
HMGB3-205ENST00000455596 RIMS1Q86UR5 1692 aaKnown RBP33.83■■■■□ 3.01
HMGB3-205ENST00000455596 CCNB3Q8WWL7 1395 aa33.83■■■■□ 3.01
HMGB3-205ENST00000455596 VPS8Q8N3P4 1428 aa33.82■■■■□ 3
HMGB3-205ENST00000455596 TRAPPC8Q9Y2L5 1435 aa33.81■■■■□ 3
HMGB3-205ENST00000455596 MYT1LQ9UL68 1186 aa33.8■■■■□ 3
HMGB3-205ENST00000455596 ZNF777Q9ULD5 760 aaPredicted RBP33.8■■■■□ 3
HMGB3-205ENST00000455596 MLH3Q9UHC1 1453 aa33.79■■■■□ 3
HMGB3-205ENST00000455596 TIAM1Q13009 1591 aa33.79■■■■□ 3
HMGB3-205ENST00000455596 DIP2CQ9Y2E4 1556 aa33.78■■■■□ 3
HMGB3-205ENST00000455596 SUPT6HQ7KZ85 1726 aaKnown RBP33.77■■■■□ 3
HMGB3-205ENST00000455596 ABCA6Q8N139 1617 aa33.77■■■■□ 3
HMGB3-205ENST00000455596 SYCP2Q9BX26 1530 aa33.77■■■■□ 3
HMGB3-205ENST00000455596 FER1L4A9Z1Z3 1794 aa33.77■■■■□ 3
HMGB3-205ENST00000455596 CFDP1Q9UEE9 299 aaPredicted RBP33.76■■■□□ 2.99
HMGB3-205ENST00000455596 KIDINS220Q9ULH0 1771 aa33.75■■■□□ 2.99
HMGB3-205ENST00000455596 PLEKHH2Q8IVE3 1493 aa33.73■■■□□ 2.99
HMGB3-205ENST00000455596 REREQ9P2R6 1566 aa33.72■■■□□ 2.99
HMGB3-205ENST00000455596 MLECQ14165 292 aa33.69■■■□□ 2.98
HMGB3-205ENST00000455596 KIAA1107Q9UPP5 1409 aa33.69■■■□□ 2.98
HMGB3-205ENST00000455596 NCOA2Q15596 1464 aa33.65■■■□□ 2.98
HMGB3-205ENST00000455596 HNRNPMP52272 730 aaKnown RBP eCLIP33.65■■■□□ 2.98
HMGB3-205ENST00000455596 MAP3K1Q13233 1512 aa33.62■■■□□ 2.97
HMGB3-205ENST00000455596 LRRC9Q6ZRR7 1453 aa33.61■■■□□ 2.97
HMGB3-205ENST00000455596 INO80Q9ULG1 1556 aaPredicted RBP33.59■■■□□ 2.97
HMGB3-205ENST00000455596 AGLP35573 1532 aa33.58■■■□□ 2.97
HMGB3-205ENST00000455596 ATP7AQ04656 1500 aa33.58■■■□□ 2.97
HMGB3-205ENST00000455596 SPAG9O60271 1321 aaKnown RBP33.58■■■□□ 2.97
HMGB3-205ENST00000455596 ZNF644Q9H582 1327 aaPredicted RBP33.54■■■□□ 2.96
HMGB3-205ENST00000455596 MBD5Q9P267 1494 aa33.51■■■□□ 2.96
HMGB3-205ENST00000455596 PLPPR3Q6T4P5 718 aa33.51■■■□□ 2.95
HMGB3-205ENST00000455596 CAMSAP2Q08AD1 1489 aa33.5■■■□□ 2.95
HMGB3-205ENST00000455596 ADGBQ8N7X0 1667 aa33.48■■■□□ 2.95
HMGB3-205ENST00000455596 KANK4Q5T7N3 995 aaPredicted RBP33.46■■■□□ 2.95
HMGB3-205ENST00000455596 LMTK3Q96Q04 1460 aa33.44■■■□□ 2.94
HMGB3-205ENST00000455596 PLXNC1O60486 1568 aa33.43■■■□□ 2.94
HMGB3-205ENST00000455596 APLP2Q06481 763 aa33.42■■■□□ 2.94
HMGB3-205ENST00000455596 A2MP01023 1474 aa33.42■■■□□ 2.94
HMGB3-205ENST00000455596 CCDC141Q6ZP82 1450 aa33.41■■■□□ 2.94
HMGB3-205ENST00000455596 C3P01024 1663 aa33.4■■■□□ 2.94
HMGB3-205ENST00000455596 RTEL1-TNFRSF6BF6WH68 1400 aa33.4■■■□□ 2.94
HMGB3-205ENST00000455596 ARHGEF5Q12774 1597 aa33.38■■■□□ 2.93
HMGB3-205ENST00000455596 RSPH4AQ5TD94 716 aa33.38■■■□□ 2.93
HMGB3-205ENST00000455596 ESF1Q9H501 851 aaKnown RBP33.38■■■□□ 2.93
HMGB3-205ENST00000455596 PREX1Q8TCU6 1659 aa33.38■■■□□ 2.93
HMGB3-205ENST00000455596 CEBPAP49715 358 aaPredicted RBP33.34■■■□□ 2.93
HMGB3-205ENST00000455596 MYOM3Q5VTT5 1437 aa33.34■■■□□ 2.93
HMGB3-205ENST00000455596 SETD1BQ9UPS6 1966 aaKnown RBP33.34■■■□□ 2.93
HMGB3-205ENST00000455596 MROH2AA6NES4 1674 aa33.33■■■□□ 2.93
HMGB3-205ENST00000455596 CNTLNQ9NXG0 1405 aa33.32■■■□□ 2.92
HMGB3-205ENST00000455596 MIA2Q96PC5 1412 aa33.31■■■□□ 2.92
HMGB3-205ENST00000455596 CLTCQ00610 1675 aaKnown RBP33.27■■■□□ 2.92
HMGB3-205ENST00000455596 TSPY4P0CV99 314 aa33.24■■■□□ 2.91
HMGB3-205ENST00000455596 TSPY10P0CW01 314 aa33.24■■■□□ 2.91
HMGB3-205ENST00000455596 DHX29Q7Z478 1369 aaKnown RBP33.23■■■□□ 2.91
HMGB3-205ENST00000455596 MAST1Q9Y2H9 1570 aa33.22■■■□□ 2.91
HMGB3-205ENST00000455596 HSPA2P54652 639 aa33.22■■■□□ 2.91
HMGB3-205ENST00000455596 GGT6Q6P531 493 aa33.2■■■□□ 2.91
HMGB3-205ENST00000455596 PTPN23Q9H3S7 1636 aa33.19■■■□□ 2.9
HMGB3-205ENST00000455596 UHRF1BP1Q6BDS2 1440 aa33.19■■■□□ 2.9
HMGB3-205ENST00000455596 ZMYM3Q14202 1370 aa33.15■■■□□ 2.9
HMGB3-205ENST00000455596 PPP6R1Q9UPN7 881 aa33.15■■■□□ 2.9
HMGB3-205ENST00000455596 CROCC2H7BZ55 1655 aa33.14■■■□□ 2.9
HMGB3-205ENST00000455596 KIF3BO15066 747 aa33.1■■■□□ 2.89
HMGB3-205ENST00000455596 NPATQ14207 1427 aa33.1■■■□□ 2.89
HMGB3-205ENST00000455596 FGD6Q6ZV73 1430 aa33.09■■■□□ 2.89
HMGB3-205ENST00000455596 FAM135AQ9P2D6 1515 aa33.06■■■□□ 2.88
HMGB3-205ENST00000455596 TCOF1Q13428 1488 aaKnown RBP33.05■■■□□ 2.88
HMGB3-205ENST00000455596 DNMT1P26358 1616 aaKnown RBP33.05■■■□□ 2.88
HMGB3-205ENST00000455596 EIF2AK4Q9P2K8 1649 aaKnown RBP33.05■■■□□ 2.88
HMGB3-205ENST00000455596 STRCQ7RTU9 1775 aa33.04■■■□□ 2.88
HMGB3-205ENST00000455596 KDM5DQ9BY66 1539 aa33.03■■■□□ 2.88
HMGB3-205ENST00000455596 SHANK2Q9UPX8 1470 aa33.03■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms