RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 POGZQ7Z3K3 1410 aa28.93■■■□□ 2.22
SQSTM1-204ENST00000453046 ZMYM4Q5VZL5 1548 aa28.92■■■□□ 2.22
SQSTM1-204ENST00000453046 MAGI2Q86UL8 1455 aa28.91■■■□□ 2.22
SQSTM1-204ENST00000453046 ZFYVE16Q7Z3T8 1539 aa28.9■■■□□ 2.22
SQSTM1-204ENST00000453046 YEATS2Q9ULM3 1422 aa28.88■■■□□ 2.21
SQSTM1-204ENST00000453046 ADAMTSL3P82987 1691 aa28.87■■■□□ 2.21
SQSTM1-204ENST00000453046 BCORL1Q5H9F3 1711 aa28.86■■■□□ 2.21
SQSTM1-204ENST00000453046 PTPRMP28827 1452 aa28.85■■■□□ 2.21
SQSTM1-204ENST00000453046 MYT1LQ9UL68 1186 aa28.84■■■□□ 2.21
SQSTM1-204ENST00000453046 HECW2Q9P2P5 1572 aa28.84■■■□□ 2.21
SQSTM1-204ENST00000453046 ZNF518AQ6AHZ1 1483 aa28.82■■■□□ 2.2
SQSTM1-204ENST00000453046 AFAP1Q8N556 730 aa28.81■■■□□ 2.2
SQSTM1-204ENST00000453046 CEP162Q5TB80 1403 aa28.79■■■□□ 2.2
SQSTM1-204ENST00000453046 CDC42BPBQ9Y5S2 1711 aa28.79■■■□□ 2.2
SQSTM1-204ENST00000453046 MADDQ8WXG6 1647 aa28.79■■■□□ 2.2
SQSTM1-204ENST00000453046 MLECQ14165 292 aa28.78■■■□□ 2.2
SQSTM1-204ENST00000453046 PREX2Q70Z35 1606 aa28.77■■■□□ 2.2
SQSTM1-204ENST00000453046 ATP10AO60312 1499 aa28.76■■■□□ 2.19
SQSTM1-204ENST00000453046 ZNF777Q9ULD5 760 aaPredicted RBP28.74■■■□□ 2.19
SQSTM1-204ENST00000453046 MTUS2Q5JR59 1369 aa28.74■■■□□ 2.19
SQSTM1-204ENST00000453046 C9orf84Q5VXU9 1444 aa28.73■■■□□ 2.19
SQSTM1-204ENST00000453046 KDM5CP41229 1560 aa28.71■■■□□ 2.19
SQSTM1-204ENST00000453046 PLPPR3Q6T4P5 718 aa28.7■■■□□ 2.18
SQSTM1-204ENST00000453046 RIMS1Q86UR5 1692 aaKnown RBP28.7■■■□□ 2.18
SQSTM1-204ENST00000453046 CDC42BPAQ5VT25 1732 aa28.69■■■□□ 2.18
SQSTM1-204ENST00000453046 SIGLEC1Q9BZZ2 1709 aa28.69■■■□□ 2.18
SQSTM1-204ENST00000453046 ABCC1P33527 1531 aa28.69■■■□□ 2.18
SQSTM1-204ENST00000453046 LOC105371045A0A1W2PR82 267 aa28.68■■■□□ 2.18
SQSTM1-204ENST00000453046 TRAPPC8Q9Y2L5 1435 aa28.68■■■□□ 2.18
SQSTM1-204ENST00000453046 CCNB3Q8WWL7 1395 aa28.66■■■□□ 2.18
SQSTM1-204ENST00000453046 ARHGEF12Q9NZN5 1544 aa28.66■■■□□ 2.18
SQSTM1-204ENST00000453046 GPATCH8Q9UKJ3 1502 aaKnown RBP28.66■■■□□ 2.18
SQSTM1-204ENST00000453046 CFDP1Q9UEE9 299 aaPredicted RBP28.65■■■□□ 2.18
SQSTM1-204ENST00000453046 MLH3Q9UHC1 1453 aa28.64■■■□□ 2.17
SQSTM1-204ENST00000453046 ITSN2Q9NZM3 1697 aa28.63■■■□□ 2.17
SQSTM1-204ENST00000453046 DIP2CQ9Y2E4 1556 aa28.59■■■□□ 2.17
SQSTM1-204ENST00000453046 HNRNPMP52272 730 aaKnown RBP eCLIP28.59■■■□□ 2.174e-8■■■■□ 21.3
SQSTM1-204ENST00000453046 FER1L4A9Z1Z3 1794 aa28.58■■■□□ 2.17
SQSTM1-204ENST00000453046 EHBP1L1Q8N3D4 1523 aa28.58■■■□□ 2.17
SQSTM1-204ENST00000453046 SAMD9LQ8IVG5 1584 aa28.58■■■□□ 2.17
SQSTM1-204ENST00000453046 SYCP2Q9BX26 1530 aa28.56■■■□□ 2.16
SQSTM1-204ENST00000453046 ABCA6Q8N139 1617 aa28.55■■■□□ 2.16
SQSTM1-204ENST00000453046 PLEKHH2Q8IVE3 1493 aa28.54■■■□□ 2.16
SQSTM1-204ENST00000453046 SPAG9O60271 1321 aaKnown RBP28.54■■■□□ 2.16
SQSTM1-204ENST00000453046 REREQ9P2R6 1566 aa28.52■■■□□ 2.16
SQSTM1-204ENST00000453046 KIAA1107Q9UPP5 1409 aa28.52■■■□□ 2.16
SQSTM1-204ENST00000453046 LMTK3Q96Q04 1460 aa28.51■■■□□ 2.15
SQSTM1-204ENST00000453046 ESF1Q9H501 851 aaKnown RBP28.5■■■□□ 2.15
SQSTM1-204ENST00000453046 KIDINS220Q9ULH0 1771 aa28.5■■■□□ 2.15
SQSTM1-204ENST00000453046 VPS8Q8N3P4 1428 aa28.48■■■□□ 2.15
SQSTM1-204ENST00000453046 TIAM1Q13009 1591 aa28.48■■■□□ 2.15
SQSTM1-204ENST00000453046 CEBPAP49715 358 aaPredicted RBP28.47■■■□□ 2.15
SQSTM1-204ENST00000453046 AGLP35573 1532 aa28.46■■■□□ 2.15
SQSTM1-204ENST00000453046 ZNF644Q9H582 1327 aaPredicted RBP28.45■■■□□ 2.15
SQSTM1-204ENST00000453046 HSPA2P54652 639 aa28.43■■■□□ 2.14
SQSTM1-204ENST00000453046 ATP7AQ04656 1500 aa28.41■■■□□ 2.14
SQSTM1-204ENST00000453046 SUPT6HQ7KZ85 1726 aaKnown RBP28.4■■■□□ 2.14
SQSTM1-204ENST00000453046 NCOA2Q15596 1464 aa28.4■■■□□ 2.14
SQSTM1-204ENST00000453046 ILDR1Q86SU0 546 aaPredicted RBP28.37■■■□□ 2.13
SQSTM1-204ENST00000453046 INO80Q9ULG1 1556 aaPredicted RBP28.35■■■□□ 2.13
SQSTM1-204ENST00000453046 A2MP01023 1474 aa28.34■■■□□ 2.13
SQSTM1-204ENST00000453046 LRRC9Q6ZRR7 1453 aa28.34■■■□□ 2.13
SQSTM1-204ENST00000453046 MBD5Q9P267 1494 aa28.34■■■□□ 2.13
SQSTM1-204ENST00000453046 CNTLNQ9NXG0 1405 aa28.32■■■□□ 2.12
SQSTM1-204ENST00000453046 PREX1Q8TCU6 1659 aa28.29■■■□□ 2.12
SQSTM1-204ENST00000453046 CAMSAP2Q08AD1 1489 aa28.29■■■□□ 2.12
SQSTM1-204ENST00000453046 RSPH4AQ5TD94 716 aa28.29■■■□□ 2.12
SQSTM1-204ENST00000453046 UHRF1BP1Q6BDS2 1440 aa28.28■■■□□ 2.12
SQSTM1-204ENST00000453046 KANK4Q5T7N3 995 aaPredicted RBP28.28■■■□□ 2.12
SQSTM1-204ENST00000453046 GGT6Q6P531 493 aa28.28■■■□□ 2.12
SQSTM1-204ENST00000453046 RTEL1-TNFRSF6BF6WH68 1400 aa28.27■■■□□ 2.12
SQSTM1-204ENST00000453046 APLP2Q06481 763 aa28.27■■■□□ 2.12
SQSTM1-204ENST00000453046 C3P01024 1663 aa28.26■■■□□ 2.12
SQSTM1-204ENST00000453046 MAP3K1Q13233 1512 aa28.26■■■□□ 2.11
SQSTM1-204ENST00000453046 CCDC141Q6ZP82 1450 aa28.26■■■□□ 2.11
SQSTM1-204ENST00000453046 PLXNC1O60486 1568 aa28.25■■■□□ 2.11
SQSTM1-204ENST00000453046 SETD1BQ9UPS6 1966 aaKnown RBP28.25■■■□□ 2.11
SQSTM1-204ENST00000453046 ADGBQ8N7X0 1667 aa28.23■■■□□ 2.11
SQSTM1-204ENST00000453046 TSPY4P0CV99 314 aa28.22■■■□□ 2.11
SQSTM1-204ENST00000453046 TSPY10P0CW01 314 aa28.22■■■□□ 2.11
SQSTM1-204ENST00000453046 ZMYM3Q14202 1370 aa28.21■■■□□ 2.11
SQSTM1-204ENST00000453046 DHX29Q7Z478 1369 aaKnown RBP28.19■■■□□ 2.1
SQSTM1-204ENST00000453046 PPP6R1Q9UPN7 881 aa28.17■■■□□ 2.1
SQSTM1-204ENST00000453046 MROH2AA6NES4 1674 aa28.16■■■□□ 2.1
SQSTM1-204ENST00000453046 KIF3BO15066 747 aa28.14■■■□□ 2.1
SQSTM1-204ENST00000453046 ARHGEF5Q12774 1597 aa28.14■■■□□ 2.1
SQSTM1-204ENST00000453046 CLTCQ00610 1675 aaKnown RBP28.13■■■□□ 2.09
SQSTM1-204ENST00000453046 MYOM3Q5VTT5 1437 aa28.13■■■□□ 2.09
SQSTM1-204ENST00000453046 DMRT2Q9Y5R5 561 aa28.13■■■□□ 2.09
SQSTM1-204ENST00000453046 NPATQ14207 1427 aa28.12■■■□□ 2.09
SQSTM1-204ENST00000453046 MIA2Q96PC5 1412 aa28.11■■■□□ 2.09
SQSTM1-204ENST00000453046 FBXO41Q8TF61 875 aa28.1■■■□□ 2.09
SQSTM1-204ENST00000453046 PTPRKQ15262 1439 aa28.03■■■□□ 2.08
SQSTM1-204ENST00000453046 STRCQ7RTU9 1775 aa28.02■■■□□ 2.08
SQSTM1-204ENST00000453046 WASHC2CQ9Y4E1 1318 aa28.02■■■□□ 2.08
SQSTM1-204ENST00000453046 MAST1Q9Y2H9 1570 aa27.99■■■□□ 2.07
SQSTM1-204ENST00000453046 CERKQ8TCT0 537 aa27.98■■■□□ 2.07
SQSTM1-204ENST00000453046 KDM5DQ9BY66 1539 aa27.97■■■□□ 2.07
SQSTM1-204ENST00000453046 NCOA1Q15788 1441 aa27.95■■■□□ 2.07
SQSTM1-204ENST00000453046 PTPRTO14522 1441 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms