RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 NISCHQ9Y2I1 1504 aa44.25■■■■■ 4.67
SQSTM1-204ENST00000453046 CCDC180Q9P1Z9 1646 aa39.52■■■■□ 3.92
SQSTM1-204ENST00000453046 ABCC9O60706 1549 aa39.31■■■■□ 3.88
SQSTM1-204ENST00000453046 RB1CC1Q8TDY2 1594 aa37.53■■■■□ 3.6
SQSTM1-204ENST00000453046 DCAF8L2P0C7V8 631 aa37.41■■■■□ 3.58
SQSTM1-204ENST00000453046 NACADO15069 1562 aa37.34■■■■□ 3.57
SQSTM1-204ENST00000453046 MYO15BQ96JP2 1530 aa36.9■■■■□ 3.5
SQSTM1-204ENST00000453046 ZCCHC6Q5VYS8 1495 aaKnown RBP36.73■■■■□ 3.47
SQSTM1-204ENST00000453046 PABPN1Q86U42 306 aaKnown RBP eCLIP36.7■■■■□ 3.47
SQSTM1-204ENST00000453046 UNC13AQ9UPW8 1703 aa36.59■■■■□ 3.45
SQSTM1-204ENST00000453046 DNAJC5BQ9UF47 199 aa36.56■■■■□ 3.44
SQSTM1-204ENST00000453046 DCAF1Q9Y4B6 1507 aa36.54■■■■□ 3.44
SQSTM1-204ENST00000453046 BICRAQ9NZM4 1560 aa36.36■■■■□ 3.41
SQSTM1-204ENST00000453046 SCRIBQ14160 1630 aa36.1■■■■□ 3.37
SQSTM1-204ENST00000453046 SHROOM4Q9ULL8 1493 aa35.94■■■■□ 3.34
SQSTM1-204ENST00000453046 EIF4G1Q04637 1599 aaKnown RBP35.49■■■■□ 3.27
SQSTM1-204ENST00000453046 CC2D2AQ9P2K1 1620 aa35.48■■■■□ 3.27
SQSTM1-204ENST00000453046 CECR2Q9BXF3 1484 aa35.37■■■■□ 3.25
SQSTM1-204ENST00000453046 NCAPD3P42695 1498 aa34.46■■■■□ 3.11
SQSTM1-204ENST00000453046 SMARCA4P51532 1647 aa34.44■■■■□ 3.1
SQSTM1-204ENST00000453046 ATAD2BQ9ULI0 1458 aa34.41■■■■□ 3.1
SQSTM1-204ENST00000453046 SMARCA2P51531 1590 aa34.35■■■■□ 3.09
SQSTM1-204ENST00000453046 BAZ1AQ9NRL2 1556 aaPredicted RBP34.35■■■■□ 3.09
SQSTM1-204ENST00000453046 HMGXB3Q12766 1538 aa34.22■■■■□ 3.07
SQSTM1-204ENST00000453046 BAZ1BQ9UIG0 1483 aaKnown RBP34.14■■■■□ 3.06
SQSTM1-204ENST00000453046 MROH2BQ7Z745 1585 aa34.1■■■■□ 3.05
SQSTM1-204ENST00000453046 PEG3Q9GZU2 1588 aa34.07■■■■□ 3.05
SQSTM1-204ENST00000453046 ERCC6Q03468 1493 aa33.96■■■■□ 3.03
SQSTM1-204ENST00000453046 NESP48681 1621 aa33.83■■■■□ 3.01
SQSTM1-204ENST00000453046 CUX2O14529 1486 aa33.73■■■□□ 2.99
SQSTM1-204ENST00000453046 WIZO95785 1651 aa33.71■■■□□ 2.99
SQSTM1-204ENST00000453046 LAMC3Q9Y6N6 1575 aa33.64■■■□□ 2.98
SQSTM1-204ENST00000453046 RSF1Q96T23 1441 aaPredicted RBP33.53■■■□□ 2.96
SQSTM1-204ENST00000453046 PDS5BQ9NTI5 1447 aa33.5■■■□□ 2.95
SQSTM1-204ENST00000453046 CADPSQ9ULU8 1353 aa33.48■■■□□ 2.95
SQSTM1-204ENST00000453046 DNAJC5Q9H3Z4 198 aa33.37■■■□□ 2.93
SQSTM1-204ENST00000453046 THOC2Q8NI27 1593 aaKnown RBP33.37■■■□□ 2.93
SQSTM1-204ENST00000453046 KIF21AQ7Z4S6 1674 aa33.36■■■□□ 2.93
SQSTM1-204ENST00000453046 TOP2AP11388 1531 aaKnown RBP33.31■■■□□ 2.92
SQSTM1-204ENST00000453046 MRC2Q9UBG0 1479 aa33.15■■■□□ 2.9
SQSTM1-204ENST00000453046 CFTRP13569 1480 aa33.12■■■□□ 2.89
SQSTM1-204ENST00000453046 CEP164Q9UPV0 1460 aa33.1■■■□□ 2.89
SQSTM1-204ENST00000453046 FANCD2Q9BXW9 1451 aa33.09■■■□□ 2.89
SQSTM1-204ENST00000453046 WDR62O43379 1518 aa33.02■■■□□ 2.88
SQSTM1-204ENST00000453046 CCDC88BA6NC98 1476 aa32.95■■■□□ 2.87
SQSTM1-204ENST00000453046 URB2Q14146 1524 aaKnown RBP32.76■■■□□ 2.83
SQSTM1-204ENST00000453046 PRDM2Q13029 1718 aa32.75■■■□□ 2.83
SQSTM1-204ENST00000453046 TOPBP1Q92547 1522 aa32.47■■■□□ 2.79
SQSTM1-204ENST00000453046 ABCC8Q09428 1581 aa32.46■■■□□ 2.79
SQSTM1-204ENST00000453046 IFT140Q96RY7 1462 aa32.42■■■□□ 2.78
SQSTM1-204ENST00000453046 SUPT5HO00267 1087 aaKnown RBP32.42■■■□□ 2.78
SQSTM1-204ENST00000453046 DNMBPQ6XZF7 1577 aa32.38■■■□□ 2.77
SQSTM1-204ENST00000453046 OSCARQ8IYS5 282 aa32.33■■■□□ 2.77
SQSTM1-204ENST00000453046 ZNF608Q9ULD9 1512 aaPredicted RBP32.31■■■□□ 2.76
SQSTM1-204ENST00000453046 POLA1P09884 1462 aaPredicted RBP32.16■■■□□ 2.74
SQSTM1-204ENST00000453046 EIF4G3O43432 1585 aaKnown RBP32.13■■■□□ 2.73
SQSTM1-204ENST00000453046 TRIM41Q8WV44 630 aa32.13■■■□□ 2.73
SQSTM1-204ENST00000453046 TARBP1Q13395 1621 aaKnown RBP32.12■■■□□ 2.73
SQSTM1-204ENST00000453046 AQRO60306 1485 aaKnown RBP eCLIP32.1■■■□□ 2.738e-8■■■■□ 22.7
SQSTM1-204ENST00000453046 SOGA1O94964 1423 aa32.08■■■□□ 2.73
SQSTM1-204ENST00000453046 RAD54L2Q9Y4B4 1467 aa32.06■■■□□ 2.72
SQSTM1-204ENST00000453046 FGD5Q6ZNL6 1462 aa32.03■■■□□ 2.72
SQSTM1-204ENST00000453046 CUX1P39880 1505 aa32.01■■■□□ 2.72
SQSTM1-204ENST00000453046 TDRD9Q8NDG6 1382 aaKnown RBP31.97■■■□□ 2.71
SQSTM1-204ENST00000453046 FBLN2P98095 1184 aa31.93■■■□□ 2.7
SQSTM1-204ENST00000453046 WDR97A6NE52 1622 aa31.83■■■□□ 2.69
SQSTM1-204ENST00000453046 CHD1O14646 1710 aa31.82■■■□□ 2.68
SQSTM1-204ENST00000453046 SNAPC4Q5SXM2 1469 aa31.77■■■□□ 2.68
SQSTM1-204ENST00000453046 RIMBP3CA6NJZ7 1639 aa31.76■■■□□ 2.67
SQSTM1-204ENST00000453046 RIMBP3BA6NNM3 1639 aa31.76■■■□□ 2.67
SQSTM1-204ENST00000453046 RIMBP3Q9UFD9 1639 aa31.76■■■□□ 2.67
SQSTM1-204ENST00000453046 GRIN2BQ13224 1484 aa31.74■■■□□ 2.67
SQSTM1-204ENST00000453046 CHMP7Q8WUX9 453 aaPredicted RBP31.73■■■□□ 2.67
SQSTM1-204ENST00000453046 ARHGEF11O15085 1522 aa31.72■■■□□ 2.67
SQSTM1-204ENST00000453046 MAGI1Q96QZ7 1491 aaPredicted RBP31.69■■■□□ 2.66
SQSTM1-204ENST00000453046 GAPVD1Q14C86 1478 aa31.68■■■□□ 2.66
SQSTM1-204ENST00000453046 WRNQ14191 1432 aaPredicted RBP eCLIP31.66■■■□□ 2.664e-10■■□□□ 11.8
SQSTM1-204ENST00000453046 ABCA10Q8WWZ4 1543 aa31.66■■■□□ 2.66
SQSTM1-204ENST00000453046 TOP2BQ02880 1626 aa31.6■■■□□ 2.65
SQSTM1-204ENST00000453046 SYNJ2O15056 1496 aa31.59■■■□□ 2.65
SQSTM1-204ENST00000453046 PBRM1Q86U86 1689 aa31.57■■■□□ 2.65
SQSTM1-204ENST00000453046 BIVM-ERCC5R4GMW8 1640 aa31.57■■■□□ 2.64
SQSTM1-204ENST00000453046 CYB5RLQ6IPT4 315 aa31.56■■■□□ 2.64
SQSTM1-204ENST00000453046 SYNJ1O43426 1573 aa31.56■■■□□ 2.64
SQSTM1-204ENST00000453046 ABCA5Q8WWZ7 1642 aa31.54■■■□□ 2.64
SQSTM1-204ENST00000453046 CLASP1Q7Z460 1538 aa31.46■■■□□ 2.63
SQSTM1-204ENST00000453046 ARAP1Q96P48 1450 aa31.42■■■□□ 2.62
SQSTM1-204ENST00000453046 GRIN2AQ12879 1464 aa31.32■■■□□ 2.6
SQSTM1-204ENST00000453046 ADAMTS12P58397 1594 aa31.3■■■□□ 2.6
SQSTM1-204ENST00000453046 FHAD1B1AJZ9 1412 aa31.29■■■□□ 2.6
SQSTM1-204ENST00000453046 ERICH3Q5RHP9 1530 aa31.28■■■□□ 2.6
SQSTM1-204ENST00000453046 NUP160Q12769 1436 aa31.18■■■□□ 2.58
SQSTM1-204ENST00000453046 TRHP20396 242 aaPredicted RBP31.16■■■□□ 2.58
SQSTM1-204ENST00000453046 CEP170Q5SW79 1584 aa31.16■■■□□ 2.58
SQSTM1-204ENST00000453046 KIF27Q86VH2 1401 aa31.06■■■□□ 2.56
SQSTM1-204ENST00000453046 ERCC6L2Q5T890 1561 aa31■■■□□ 2.55
SQSTM1-204ENST00000453046 IGF1RP08069 1367 aa30.98■■■□□ 2.55
SQSTM1-204ENST00000453046 SHROOM2Q13796 1616 aa30.96■■■□□ 2.55
SQSTM1-204ENST00000453046 JPH4Q96JJ6 628 aa30.94■■■□□ 2.54
SQSTM1-204ENST00000453046 PRG4Q92954 1404 aaPredicted RBP30.91■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms