RNA–Protein interactions for RNA: ENST00000441443.6

SHOX2-203, Transcript of short stature homeobox 2, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHOX2, Length 3,038 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-203ENST00000441443 CDK13Q14004 1512 aaKnown RBP27.66■■■□□ 2.02
SHOX2-203ENST00000441443 IQGAP2Q13576 1575 aa27.65■■■□□ 2.02
SHOX2-203ENST00000441443 MAGI3Q5TCQ9 1506 aa27.64■■■□□ 2.01
SHOX2-203ENST00000441443 CHMP7Q8WUX9 453 aaPredicted RBP27.63■■■□□ 2.01
SHOX2-203ENST00000441443 ADAMTS12P58397 1594 aa27.61■■■□□ 2.01
SHOX2-203ENST00000441443 SUPT6HQ7KZ85 1726 aaKnown RBP27.59■■■□□ 2.01
SHOX2-203ENST00000441443 EHBP1L1Q8N3D4 1523 aa27.58■■■□□ 2.01
SHOX2-203ENST00000441443 CNGB1Q14028 1251 aaPredicted RBP27.58■■■□□ 2.01
SHOX2-203ENST00000441443 EPRSP07814 1512 aaKnown RBP27.57■■■□□ 2
SHOX2-203ENST00000441443 IFT140Q96RY7 1462 aa27.57■■■□□ 2
SHOX2-203ENST00000441443 AKNAQ7Z591 1439 aa27.56■■■□□ 2
SHOX2-203ENST00000441443 CCDC7Q96M83 1385 aa27.55■■■□□ 2
SHOX2-203ENST00000441443 ANP32AP39687 249 aaKnown RBP27.55■■■□□ 2
SHOX2-203ENST00000441443 ANO8Q9HCE9 1232 aaPredicted RBP27.55■■■□□ 2
SHOX2-203ENST00000441443 FOXD1Q16676 465 aa27.54■■■□□ 2
SHOX2-203ENST00000441443 SENP3-EIF4A1A0A087X0R7 540 aa27.54■■■□□ 2
SHOX2-203ENST00000441443 CCDC136Q96JN2 1154 aa27.54■■■□□ 2
SHOX2-203ENST00000441443 IPO9Q96P70 1041 aaKnown RBP27.54■■■□□ 2
SHOX2-203ENST00000441443 L3MBTL2Q969R5 705 aa27.53■■■□□ 2
SHOX2-203ENST00000441443 ZNF644Q9H582 1327 aaPredicted RBP27.53■■■□□ 2
SHOX2-203ENST00000441443 RTL5Q5HYW3 569 aaPredicted RBP27.52■■■□□ 2
SHOX2-203ENST00000441443 UGGT2Q9NYU1 1516 aa27.5■■□□□ 1.99
SHOX2-203ENST00000441443 ZBTB47Q9UFB7 747 aaPredicted RBP27.5■■□□□ 1.99
SHOX2-203ENST00000441443 HECW1Q76N89 1606 aa27.49■■□□□ 1.99
SHOX2-203ENST00000441443 ZNF777Q9ULD5 760 aaPredicted RBP27.49■■□□□ 1.99
SHOX2-203ENST00000441443 NCOA1Q15788 1441 aa27.48■■□□□ 1.99
SHOX2-203ENST00000441443 THOC2Q8NI27 1593 aaKnown RBP27.48■■□□□ 1.99
SHOX2-203ENST00000441443 DENND4BO75064 1496 aaPredicted RBP27.46■■□□□ 1.99
SHOX2-203ENST00000441443 WDR62O43379 1518 aa27.42■■□□□ 1.98
SHOX2-203ENST00000441443 KIAA0586Q9BVV6 1533 aa27.42■■□□□ 1.98
SHOX2-203ENST00000441443 KIF7Q2M1P5 1343 aa27.41■■□□□ 1.98
SHOX2-203ENST00000441443 GRIN2AQ12879 1464 aa27.41■■□□□ 1.98
SHOX2-203ENST00000441443 SMG6Q86US8 1419 aaKnown RBP27.4■■□□□ 1.98
SHOX2-203ENST00000441443 NBPF8Q3BBV2 869 aa27.4■■□□□ 1.98
SHOX2-203ENST00000441443 MPHOSPH9Q99550 1183 aa27.4■■□□□ 1.98
SHOX2-203ENST00000441443 NUDCQ9Y266 331 aa27.4■■□□□ 1.98
SHOX2-203ENST00000441443 IL27Q8NEV9 243 aa27.39■■□□□ 1.98
SHOX2-203ENST00000441443 EIF4G3O43432 1585 aaKnown RBP27.39■■□□□ 1.97
SHOX2-203ENST00000441443 SALL2Q9Y467 1007 aaPredicted RBP27.39■■□□□ 1.97
SHOX2-203ENST00000441443 DISP1Q96F81 1524 aa27.38■■□□□ 1.97
SHOX2-203ENST00000441443 RTN4Q9NQC3 1192 aaKnown RBP27.36■■□□□ 1.97
SHOX2-203ENST00000441443 NPM2Q86SE8 214 aaKnown RBP27.35■■□□□ 1.97
SHOX2-203ENST00000441443 JPH4Q96JJ6 628 aa27.35■■□□□ 1.97
SHOX2-203ENST00000441443 ARHGEF11O15085 1522 aa27.35■■□□□ 1.97
SHOX2-203ENST00000441443 POLR3GLQ9BT43 218 aa27.34■■□□□ 1.97
SHOX2-203ENST00000441443 CFDP1Q9UEE9 299 aaPredicted RBP27.33■■□□□ 1.97
SHOX2-203ENST00000441443 PRG4Q92954 1404 aaPredicted RBP27.33■■□□□ 1.97
SHOX2-203ENST00000441443 NUP153P49790 1475 aaKnown RBP27.33■■□□□ 1.96
SHOX2-203ENST00000441443 KDM6BO15054 1643 aa27.32■■□□□ 1.96
SHOX2-203ENST00000441443 RNF123Q5XPI4 1314 aa27.32■■□□□ 1.96
SHOX2-203ENST00000441443 KIAA0556O60303 1618 aa27.31■■□□□ 1.96
SHOX2-203ENST00000441443 PLB1Q6P1J6 1458 aa27.31■■□□□ 1.96
SHOX2-203ENST00000441443 MIA2Q96PC5 1412 aa27.27■■□□□ 1.96
SHOX2-203ENST00000441443 TCOF1Q13428 1488 aaKnown RBP27.27■■□□□ 1.96
SHOX2-203ENST00000441443 SLC4A1APQ9BWU0 796 aaKnown RBP27.27■■□□□ 1.96
SHOX2-203ENST00000441443 LAS1LQ9Y4W2 734 aaKnown RBP27.27■■□□□ 1.96
SHOX2-203ENST00000441443 SPATA31E1Q6ZUB1 1445 aa27.22■■□□□ 1.95
SHOX2-203ENST00000441443 DAPK1P53355 1430 aa27.21■■□□□ 1.95
SHOX2-203ENST00000441443 SYNJ2O15056 1496 aa27.21■■□□□ 1.95
SHOX2-203ENST00000441443 NEFMP07197 916 aa27.2■■□□□ 1.94
SHOX2-203ENST00000441443 RAPGEF6Q8TEU7 1601 aa27.2■■□□□ 1.94
SHOX2-203ENST00000441443 ABCC5O15440 1437 aa27.19■■□□□ 1.94
SHOX2-203ENST00000441443 CEP170Q5SW79 1584 aa27.19■■□□□ 1.94
SHOX2-203ENST00000441443 MAGI1Q96QZ7 1491 aaPredicted RBP27.19■■□□□ 1.94
SHOX2-203ENST00000441443 DHX29Q7Z478 1369 aaKnown RBP27.19■■□□□ 1.94
SHOX2-203ENST00000441443 GCC2Q8IWJ2 1684 aa27.18■■□□□ 1.94
SHOX2-203ENST00000441443 CARMIL2Q6F5E8 1435 aa27.17■■□□□ 1.94
SHOX2-203ENST00000441443 PLEKHD1A6NEE1 506 aa27.16■■□□□ 1.94
SHOX2-203ENST00000441443 ZNF326Q5BKZ1 582 aaKnown RBP27.16■■□□□ 1.94
SHOX2-203ENST00000441443 ANKRD30BQ9BXX2 1392 aa27.16■■□□□ 1.94
SHOX2-203ENST00000441443 RPRD2Q5VT52 1461 aaKnown RBP27.14■■□□□ 1.94
SHOX2-203ENST00000441443 TEX14Q8IWB6 1497 aa27.13■■□□□ 1.93
SHOX2-203ENST00000441443 EXOC6Q8TAG9 804 aa27.13■■□□□ 1.93
SHOX2-203ENST00000441443 TROQ12816 1431 aaPredicted RBP27.13■■□□□ 1.93
SHOX2-203ENST00000441443 TMC1Q8TDI8 760 aa27.13■■□□□ 1.93
SHOX2-203ENST00000441443 PNISRQ8TF01 805 aaKnown RBP27.13■■□□□ 1.93
SHOX2-203ENST00000441443 PDE4AP27815 886 aa27.11■■□□□ 1.93
SHOX2-203ENST00000441443 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.11■■□□□ 1.93
SHOX2-203ENST00000441443 TCERG1O14776 1098 aaKnown RBP27.06■■□□□ 1.92
SHOX2-203ENST00000441443 RRP1P56182 461 aaKnown RBP27.06■■□□□ 1.92
SHOX2-203ENST00000441443 POLR1AO95602 1720 aaPredicted RBP27.04■■□□□ 1.92
SHOX2-203ENST00000441443 CAMSAP2Q08AD1 1489 aa27.04■■□□□ 1.92
SHOX2-203ENST00000441443 KIF14Q15058 1648 aa27.03■■□□□ 1.92
SHOX2-203ENST00000441443 GPATCH8Q9UKJ3 1502 aaKnown RBP27.03■■□□□ 1.92
SHOX2-203ENST00000441443 ROCK1Q13464 1354 aa27.02■■□□□ 1.92
SHOX2-203ENST00000441443 BACH2Q9BYV9 841 aa27.02■■□□□ 1.92
SHOX2-203ENST00000441443 USP47Q96K76 1375 aa27.02■■□□□ 1.92
SHOX2-203ENST00000441443 USP35Q9P2H5 1018 aa27.01■■□□□ 1.91
SHOX2-203ENST00000441443 HNRNPMP52272 730 aaKnown RBP eCLIP27.01■■□□□ 1.91
SHOX2-203ENST00000441443 NUP160Q12769 1436 aa27.01■■□□□ 1.91
SHOX2-203ENST00000441443 PKD2Q13563 968 aa27■■□□□ 1.91
SHOX2-203ENST00000441443 DNMT1P26358 1616 aaKnown RBP26.99■■□□□ 1.91
SHOX2-203ENST00000441443 BCORL1Q5H9F3 1711 aa26.98■■□□□ 1.91
SHOX2-203ENST00000441443 RCAN3Q9UKA8 241 aa26.98■■□□□ 1.91
SHOX2-203ENST00000441443 SKAP1Q86WV1 359 aa26.97■■□□□ 1.91
SHOX2-203ENST00000441443 TSPY4P0CV99 314 aa26.96■■□□□ 1.91
SHOX2-203ENST00000441443 TSPY10P0CW01 314 aa26.96■■□□□ 1.91
SHOX2-203ENST00000441443 PPM1GO15355 546 aaPredicted RBP26.95■■□□□ 1.9
SHOX2-203ENST00000441443 WASHC2CQ9Y4E1 1318 aa26.94■■□□□ 1.9
SHOX2-203ENST00000441443 PTPRGP23470 1445 aa26.93■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms