RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 CDC42BPBQ9Y5S2 1711 aa37.66■■■■□ 3.62
VARS-217ENST00000440048 PREX2Q70Z35 1606 aa37.63■■■■□ 3.61
VARS-217ENST00000440048 MTUS2Q5JR59 1369 aa37.63■■■■□ 3.61
VARS-217ENST00000440048 SCAPERQ9BY12 1400 aa37.61■■■■□ 3.61
VARS-217ENST00000440048 CDC42BPAQ5VT25 1732 aa37.61■■■■□ 3.61
VARS-217ENST00000440048 EHBP1L1Q8N3D4 1523 aa37.55■■■■□ 3.6
VARS-217ENST00000440048 POGZQ7Z3K3 1410 aa37.54■■■■□ 3.6
VARS-217ENST00000440048 ZMYM4Q5VZL5 1548 aa37.53■■■■□ 3.6
VARS-217ENST00000440048 GPATCH8Q9UKJ3 1502 aaKnown RBP37.51■■■■□ 3.59
VARS-217ENST00000440048 TIAM1Q13009 1591 aa37.51■■■■□ 3.59
VARS-217ENST00000440048 ARHGEF40Q8TER5 1519 aa37.47■■■■□ 3.59
VARS-217ENST00000440048 CCNB3Q8WWL7 1395 aa37.45■■■■□ 3.59
VARS-217ENST00000440048 ABCC1P33527 1531 aa37.43■■■■□ 3.58
VARS-217ENST00000440048 MAGI2Q86UL8 1455 aa37.43■■■■□ 3.58
VARS-217ENST00000440048 ZFYVE16Q7Z3T8 1539 aa37.41■■■■□ 3.58
VARS-217ENST00000440048 ZNF518AQ6AHZ1 1483 aa37.41■■■■□ 3.58
VARS-217ENST00000440048 YEATS2Q9ULM3 1422 aa37.4■■■■□ 3.58
VARS-217ENST00000440048 ARHGEF12Q9NZN5 1544 aa37.4■■■■□ 3.58
VARS-217ENST00000440048 ITSN2Q9NZM3 1697 aa37.38■■■■□ 3.57
VARS-217ENST00000440048 AFAP1Q8N556 730 aa37.38■■■■□ 3.57
VARS-217ENST00000440048 ZNF777Q9ULD5 760 aaPredicted RBP37.38■■■■□ 3.57
VARS-217ENST00000440048 SAMD9LQ8IVG5 1584 aa37.38■■■■□ 3.57
VARS-217ENST00000440048 MAP3K1Q13233 1512 aa37.37■■■■□ 3.57
VARS-217ENST00000440048 SUPT6HQ7KZ85 1726 aaKnown RBP37.37■■■■□ 3.57
VARS-217ENST00000440048 CFDP1Q9UEE9 299 aaPredicted RBP37.37■■■■□ 3.57
VARS-217ENST00000440048 KDM5CP41229 1560 aa37.36■■■■□ 3.57
VARS-217ENST00000440048 LRRC9Q6ZRR7 1453 aa37.35■■■■□ 3.57
VARS-217ENST00000440048 TRAPPC8Q9Y2L5 1435 aa37.34■■■■□ 3.57
VARS-217ENST00000440048 NCOA2Q15596 1464 aa37.33■■■■□ 3.57
VARS-217ENST00000440048 ARID4BQ4LE39 1312 aaPredicted RBP37.29■■■■□ 3.56
VARS-217ENST00000440048 SYCP2Q9BX26 1530 aa37.27■■■■□ 3.56
VARS-217ENST00000440048 HECW2Q9P2P5 1572 aa37.27■■■■□ 3.56
VARS-217ENST00000440048 KANK4Q5T7N3 995 aaPredicted RBP37.27■■■■□ 3.56
VARS-217ENST00000440048 PLEKHH2Q8IVE3 1493 aa37.25■■■■□ 3.55
VARS-217ENST00000440048 KIAA1107Q9UPP5 1409 aa37.24■■■■□ 3.55
VARS-217ENST00000440048 ATP10AO60312 1499 aa37.24■■■■□ 3.55
VARS-217ENST00000440048 BCORL1Q5H9F3 1711 aa37.24■■■■□ 3.55
VARS-217ENST00000440048 SIGLEC1Q9BZZ2 1709 aa37.24■■■■□ 3.55
VARS-217ENST00000440048 HNRNPMP52272 730 aaKnown RBP eCLIP37.23■■■■□ 3.55
VARS-217ENST00000440048 MLH3Q9UHC1 1453 aa37.23■■■■□ 3.55
VARS-217ENST00000440048 ADAMTSL3P82987 1691 aa37.22■■■■□ 3.55
VARS-217ENST00000440048 MYT1LQ9UL68 1186 aa37.22■■■■□ 3.55
VARS-217ENST00000440048 APLP2Q06481 763 aa37.2■■■■□ 3.55
VARS-217ENST00000440048 ZNF644Q9H582 1327 aaPredicted RBP37.19■■■■□ 3.54
VARS-217ENST00000440048 C9orf84Q5VXU9 1444 aa37.19■■■■□ 3.54
VARS-217ENST00000440048 DIP2CQ9Y2E4 1556 aa37.17■■■■□ 3.54
VARS-217ENST00000440048 ABCA6Q8N139 1617 aa37.15■■■■□ 3.54
VARS-217ENST00000440048 KIDINS220Q9ULH0 1771 aa37.15■■■■□ 3.54
VARS-217ENST00000440048 MADDQ8WXG6 1647 aa37.1■■■■□ 3.53
VARS-217ENST00000440048 SPAG9O60271 1321 aaKnown RBP37.1■■■■□ 3.53
VARS-217ENST00000440048 MBD5Q9P267 1494 aa37.08■■■■□ 3.53
VARS-217ENST00000440048 REREQ9P2R6 1566 aa37.07■■■■□ 3.52
VARS-217ENST00000440048 CAMSAP2Q08AD1 1489 aa37.07■■■■□ 3.52
VARS-217ENST00000440048 PTPRMP28827 1452 aa37.04■■■■□ 3.52
VARS-217ENST00000440048 MLECQ14165 292 aa37.03■■■■□ 3.52
VARS-217ENST00000440048 ATP7AQ04656 1500 aa37.02■■■■□ 3.52
VARS-217ENST00000440048 INO80Q9ULG1 1556 aaPredicted RBP37.02■■■■□ 3.52
VARS-217ENST00000440048 MYOM3Q5VTT5 1437 aa37■■■■□ 3.51
VARS-217ENST00000440048 RIMS1Q86UR5 1692 aaKnown RBP36.99■■■■□ 3.51
VARS-217ENST00000440048 MIA2Q96PC5 1412 aa36.95■■■■□ 3.51
VARS-217ENST00000440048 AGLP35573 1532 aa36.95■■■■□ 3.5
VARS-217ENST00000440048 CCDC141Q6ZP82 1450 aa36.94■■■■□ 3.5
VARS-217ENST00000440048 FER1L4A9Z1Z3 1794 aa36.94■■■■□ 3.5
VARS-217ENST00000440048 RSPH4AQ5TD94 716 aa36.92■■■■□ 3.5
VARS-217ENST00000440048 ARHGEF5Q12774 1597 aa36.91■■■■□ 3.5
VARS-217ENST00000440048 RTEL1-TNFRSF6BF6WH68 1400 aa36.89■■■■□ 3.5
VARS-217ENST00000440048 A2MP01023 1474 aa36.85■■■■□ 3.49
VARS-217ENST00000440048 ADGBQ8N7X0 1667 aa36.84■■■■□ 3.49
VARS-217ENST00000440048 PLXNC1O60486 1568 aa36.83■■■■□ 3.49
VARS-217ENST00000440048 PTPN23Q9H3S7 1636 aa36.79■■■■□ 3.48
VARS-217ENST00000440048 TSPY4P0CV99 314 aa36.78■■■■□ 3.48
VARS-217ENST00000440048 TSPY10P0CW01 314 aa36.78■■■■□ 3.48
VARS-217ENST00000440048 FGD6Q6ZV73 1430 aa36.77■■■■□ 3.48
VARS-217ENST00000440048 PLPPR3Q6T4P5 718 aa36.76■■■■□ 3.48
VARS-217ENST00000440048 MAST1Q9Y2H9 1570 aa36.72■■■■□ 3.47
VARS-217ENST00000440048 DHX29Q7Z478 1369 aaKnown RBP36.71■■■■□ 3.47
VARS-217ENST00000440048 TCOF1Q13428 1488 aaKnown RBP36.7■■■■□ 3.47
VARS-217ENST00000440048 ESF1Q9H501 851 aaKnown RBP36.67■■■■□ 3.46
VARS-217ENST00000440048 CEBPAP49715 358 aaPredicted RBP36.65■■■■□ 3.46
VARS-217ENST00000440048 ABCC5O15440 1437 aa36.63■■■■□ 3.45
VARS-217ENST00000440048 CNTLNQ9NXG0 1405 aa36.62■■■■□ 3.45
VARS-217ENST00000440048 GGT6Q6P531 493 aa36.62■■■■□ 3.45
VARS-217ENST00000440048 CROCC2H7BZ55 1655 aa36.61■■■■□ 3.45
VARS-217ENST00000440048 C3P01024 1663 aa36.61■■■■□ 3.45
VARS-217ENST00000440048 DNMT1P26358 1616 aaKnown RBP36.6■■■■□ 3.45
VARS-217ENST00000440048 LMTK3Q96Q04 1460 aa36.6■■■■□ 3.45
VARS-217ENST00000440048 SETD1BQ9UPS6 1966 aaKnown RBP36.58■■■■□ 3.45
VARS-217ENST00000440048 DAPK1P53355 1430 aa36.58■■■■□ 3.45
VARS-217ENST00000440048 SHANK2Q9UPX8 1470 aa36.57■■■■□ 3.45
VARS-217ENST00000440048 KIF3BO15066 747 aa36.56■■■■□ 3.44
VARS-217ENST00000440048 PPARGC1BQ86YN6 1023 aaKnown RBP36.56■■■■□ 3.44
VARS-217ENST00000440048 MROH2AA6NES4 1674 aa36.55■■■■□ 3.44
VARS-217ENST00000440048 CLTCQ00610 1675 aaKnown RBP36.54■■■■□ 3.44
VARS-217ENST00000440048 PPP6R1Q9UPN7 881 aa36.52■■■■□ 3.44
VARS-217ENST00000440048 FAM50AQ14320 339 aaKnown RBP36.51■■■■□ 3.44
VARS-217ENST00000440048 ZMYM3Q14202 1370 aa36.49■■■■□ 3.43
VARS-217ENST00000440048 PREX1Q8TCU6 1659 aa36.47■■■■□ 3.43
VARS-217ENST00000440048 DUOX2Q9NRD8 1548 aa36.45■■■■□ 3.43
VARS-217ENST00000440048 KIF15Q9NS87 1388 aa36.44■■■■□ 3.42
VARS-217ENST00000440048 RRP7BPQ9NSQ0 103 aa36.43■■■■□ 3.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms