RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 MORC1Q86VD1 984 aa16.97■□□□□ 0.31
SPG11-202ENST00000427534 RTF1Q92541 710 aaKnown RBP16.96■□□□□ 0.31
SPG11-202ENST00000427534 CARMIL1Q5VZK9 1371 aa16.95■□□□□ 0.3
SPG11-202ENST00000427534 CCNB3Q8WWL7 1395 aa16.94■□□□□ 0.3
SPG11-202ENST00000427534 MSH5O43196 834 aa16.94■□□□□ 0.3
SPG11-202ENST00000427534 FHAD1B1AJZ9 1412 aa16.93■□□□□ 0.3
SPG11-202ENST00000427534 CUX2O14529 1486 aa16.93■□□□□ 0.3
SPG11-202ENST00000427534 KLHL34Q8N239 644 aa16.92■□□□□ 0.3
SPG11-202ENST00000427534 DDRGK1Q96HY6 314 aa16.91■□□□□ 0.3
SPG11-202ENST00000427534 G3V3G9 751 aa16.89■□□□□ 0.3
SPG11-202ENST00000427534 DCAF8Q5TAQ9 597 aa16.89■□□□□ 0.3
SPG11-202ENST00000427534 PRM3Q9NNZ6 103 aa16.89■□□□□ 0.29
SPG11-202ENST00000427534 KANK1Q14678 1352 aa16.89■□□□□ 0.29
SPG11-202ENST00000427534 GNL2Q13823 731 aaKnown RBP16.89■□□□□ 0.29
SPG11-202ENST00000427534 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.88■□□□□ 0.29
SPG11-202ENST00000427534 AEBP2Q6ZN18 517 aaPredicted RBP16.88■□□□□ 0.29
SPG11-202ENST00000427534 TMF1P82094 1093 aa16.88■□□□□ 0.29
SPG11-202ENST00000427534 NOL8Q76FK4 1167 aaKnown RBP16.86■□□□□ 0.29
SPG11-202ENST00000427534 ARID3AQ99856 593 aa16.86■□□□□ 0.29
SPG11-202ENST00000427534 CCDC146Q8IYE0 955 aa16.85■□□□□ 0.29
SPG11-202ENST00000427534 CCDC88BA6NC98 1476 aa16.84■□□□□ 0.29
SPG11-202ENST00000427534 MROH2BQ7Z745 1585 aa16.84■□□□□ 0.29
SPG11-202ENST00000427534 PHF23Q9BUL5 403 aaPredicted RBP16.83■□□□□ 0.28
SPG11-202ENST00000427534 GOLGA6L4A6NEF3 574 aa16.83■□□□□ 0.28
SPG11-202ENST00000427534 NGEFQ8N5V2 710 aa16.83■□□□□ 0.28
SPG11-202ENST00000427534 NAP1L5Q96NT1 182 aaPredicted RBP16.83■□□□□ 0.28
SPG11-202ENST00000427534 SLC4A10Q6U841 1118 aa16.82■□□□□ 0.28
SPG11-202ENST00000427534 U2AF1L5P0DN76 240 aaPredicted RBP16.82■□□□□ 0.28
SPG11-202ENST00000427534 U2AF1Q01081 240 aaKnown RBP eCLIP16.82■□□□□ 0.285e-6■■■□□ 15.5
SPG11-202ENST00000427534 TMX4Q9H1E5 349 aaPredicted RBP16.82■□□□□ 0.28
SPG11-202ENST00000427534 TAF7LQ5H9L4 462 aa16.82■□□□□ 0.28
SPG11-202ENST00000427534 DRC7Q8IY82 874 aa16.82■□□□□ 0.28
SPG11-202ENST00000427534 PKD2Q13563 968 aa16.81■□□□□ 0.28
SPG11-202ENST00000427534 HDGFP51858 240 aaKnown RBP16.81■□□□□ 0.28
SPG11-202ENST00000427534 VPS8Q8N3P4 1428 aa16.81■□□□□ 0.28
SPG11-202ENST00000427534 HNRNPMP52272 730 aaKnown RBP eCLIP16.81■□□□□ 0.28
SPG11-202ENST00000427534 CREBRFQ8IUR6 639 aa16.81■□□□□ 0.28
SPG11-202ENST00000427534 HDGFL2Q7Z4V5 671 aaPredicted RBP16.8■□□□□ 0.28
SPG11-202ENST00000427534 FOXD4L1Q9NU39 408 aa16.8■□□□□ 0.28
SPG11-202ENST00000427534 ITPRIPQ8IWB1 547 aa16.8■□□□□ 0.28
SPG11-202ENST00000427534 GORABQ5T7V8 394 aa16.8■□□□□ 0.28
SPG11-202ENST00000427534 TIMELESSQ9UNS1 1208 aa16.8■□□□□ 0.28
SPG11-202ENST00000427534 GLIPR1L2Q4G1C9 344 aa16.8■□□□□ 0.28
SPG11-202ENST00000427534 WWC1Q8IX03 1113 aa16.79■□□□□ 0.28
SPG11-202ENST00000427534 NGDNQ8NEJ9 315 aaKnown RBP16.79■□□□□ 0.28
SPG11-202ENST00000427534 HSP90B1P14625 803 aaKnown RBP16.79■□□□□ 0.28
SPG11-202ENST00000427534 VPS53Q5VIR6 699 aa16.78■□□□□ 0.28
SPG11-202ENST00000427534 KANK4Q5T7N3 995 aaPredicted RBP16.78■□□□□ 0.28
SPG11-202ENST00000427534 RAD21O60216 631 aa16.78■□□□□ 0.28
SPG11-202ENST00000427534 ABCC8Q09428 1581 aa16.78■□□□□ 0.28
SPG11-202ENST00000427534 SETD5Q9C0A6 1442 aa16.77■□□□□ 0.28
SPG11-202ENST00000427534 KIF3BO15066 747 aa16.77■□□□□ 0.28
SPG11-202ENST00000427534 MEX3CQ5U5Q3 659 aaKnown RBP16.77■□□□□ 0.27
SPG11-202ENST00000427534 FRAT2O75474 233 aaPredicted RBP16.76■□□□□ 0.27
SPG11-202ENST00000427534 GTF2E1P29083 439 aaPredicted RBP16.75■□□□□ 0.27
SPG11-202ENST00000427534 SYTL4Q96C24 671 aaPredicted RBP16.75■□□□□ 0.27
SPG11-202ENST00000427534 ARHGAP35Q9NRY4 1499 aa16.75■□□□□ 0.27
SPG11-202ENST00000427534 HSPA5P11021 654 aaKnown RBP16.75■□□□□ 0.27
SPG11-202ENST00000427534 CYB5RLQ6IPT4 315 aa16.75■□□□□ 0.27
SPG11-202ENST00000427534 PPP4R2Q9NY27 417 aa16.75■□□□□ 0.27
SPG11-202ENST00000427534 FBXO3Q9UK99 471 aa16.75■□□□□ 0.27
SPG11-202ENST00000427534 FOXD4L5Q5VV16 416 aaPredicted RBP16.75■□□□□ 0.27
SPG11-202ENST00000427534 FOXD4L4Q8WXT5 416 aaPredicted RBP16.75■□□□□ 0.27
SPG11-202ENST00000427534 TOMM22Q9NS69 142 aa16.75■□□□□ 0.27
SPG11-202ENST00000427534 GZF1Q9H116 711 aaPredicted RBP16.74■□□□□ 0.27
SPG11-202ENST00000427534 PNNQ9H307 717 aaKnown RBP16.74■□□□□ 0.27
SPG11-202ENST00000427534 CLUAP1Q96AJ1 413 aa16.73■□□□□ 0.27
SPG11-202ENST00000427534 FBXW7Q969H0 707 aa16.73■□□□□ 0.27
SPG11-202ENST00000427534 TRIM6-TRIM34B2RNG4 842 aa16.73■□□□□ 0.27
SPG11-202ENST00000427534 NECTIN2Q92692 538 aa16.73■□□□□ 0.27
SPG11-202ENST00000427534 RRP7AQ9Y3A4 280 aaKnown RBP16.73■□□□□ 0.27
SPG11-202ENST00000427534 HSCBQ8IWL3 235 aa16.72■□□□□ 0.27
SPG11-202ENST00000427534 EVA1CP58658 441 aa16.72■□□□□ 0.27
SPG11-202ENST00000427534 ROCK2O75116 1388 aaKnown RBP16.71■□□□□ 0.27
SPG11-202ENST00000427534 AMPHP49418 695 aa16.71■□□□□ 0.27
SPG11-202ENST00000427534 TRAK1Q9UPV9 953 aa16.7■□□□□ 0.26
SPG11-202ENST00000427534 ELL2O00472 640 aaPredicted RBP16.7■□□□□ 0.26
SPG11-202ENST00000427534 SAMD1Q6SPF0 538 aaPredicted RBP16.7■□□□□ 0.26
SPG11-202ENST00000427534 SMARCA2P51531 1590 aa16.69■□□□□ 0.26
SPG11-202ENST00000427534 TDRD9Q8NDG6 1382 aaKnown RBP16.69■□□□□ 0.26
SPG11-202ENST00000427534 KIAA1211Q6ZU35 1233 aa16.68■□□□□ 0.26
SPG11-202ENST00000427534 GOLGA6L6A8MZA4 724 aa16.68■□□□□ 0.26
SPG11-202ENST00000427534 EID1Q9Y6B2 187 aa16.67■□□□□ 0.26
SPG11-202ENST00000427534 MCCP23508 829 aa16.67■□□□□ 0.26
SPG11-202ENST00000427534 WASHC2CQ9Y4E1 1318 aa16.67■□□□□ 0.26
SPG11-202ENST00000427534 CCER2I3L3R5 266 aa16.67■□□□□ 0.26
SPG11-202ENST00000427534 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.66■□□□□ 0.26
SPG11-202ENST00000427534 SLKQ9H2G2 1235 aaPredicted RBP16.65■□□□□ 0.26
SPG11-202ENST00000427534 PDS5BQ9NTI5 1447 aa16.65■□□□□ 0.26
SPG11-202ENST00000427534 ZNF428Q96B54 188 aa16.65■□□□□ 0.26
SPG11-202ENST00000427534 MFAP1P55081 439 aaKnown RBP16.64■□□□□ 0.25
SPG11-202ENST00000427534 FOXD4L6Q3SYB3 417 aaPredicted RBP16.64■□□□□ 0.25
SPG11-202ENST00000427534 FOXD4L3Q6VB84 417 aaPredicted RBP16.64■□□□□ 0.25
SPG11-202ENST00000427534 RASSF8Q8NHQ8 419 aa16.64■□□□□ 0.25
SPG11-202ENST00000427534 CARMIL2Q6F5E8 1435 aa16.63■□□□□ 0.25
SPG11-202ENST00000427534 ANP32EQ9BTT0 268 aa16.63■□□□□ 0.25
SPG11-202ENST00000427534 RAB3GAP2Q9H2M9 1393 aa16.63■□□□□ 0.25
SPG11-202ENST00000427534 FMN1Q68DA7 1419 aa16.63■□□□□ 0.25
SPG11-202ENST00000427534 NUP155O75694 1391 aa16.63■□□□□ 0.25
SPG11-202ENST00000427534 NOP58Q9Y2X3 529 aaKnown RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms