RNA–Protein interactions for RNA: ENST00000426431.2

SP1-202, Transcript of Sp1 transcription factor, humanhuman

TSL 1 (best) BASIC

Gene SP1, Length 7,603 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SP1-202ENST00000426431 NCLP19338 710 aaKnown RBP13.16□□□□□ -0.3
SP1-202ENST00000426431 STAC3Q96MF2 364 aa13.16□□□□□ -0.3
SP1-202ENST00000426431 SIN3AQ96ST3 1273 aa13.16□□□□□ -0.3
SP1-202ENST00000426431 GOLGA6L22H0YM25 854 aa13.15□□□□□ -0.3
SP1-202ENST00000426431 RALBP1Q15311 655 aa13.15□□□□□ -0.3
SP1-202ENST00000426431 HIRIP3Q9BW71 556 aaPredicted RBP13.15□□□□□ -0.3
SP1-202ENST00000426431 WASHC2CQ9Y4E1 1318 aa13.14□□□□□ -0.31
SP1-202ENST00000426431 TERF2IPQ9NYB0 399 aa13.14□□□□□ -0.31
SP1-202ENST00000426431 HMGXB3Q12766 1538 aa13.14□□□□□ -0.31
SP1-202ENST00000426431 CUX1P39880 1505 aa13.13□□□□□ -0.31
SP1-202ENST00000426431 RAB3GAP2Q9H2M9 1393 aa13.13□□□□□ -0.31
SP1-202ENST00000426431 HDAC5Q9UQL6 1122 aa13.13□□□□□ -0.31
SP1-202ENST00000426431 U2SURPO15042 1029 aaKnown RBP13.12□□□□□ -0.31
SP1-202ENST00000426431 RTF1Q92541 710 aaKnown RBP13.12□□□□□ -0.31
SP1-202ENST00000426431 GRIN2BQ13224 1484 aa13.11□□□□□ -0.31
SP1-202ENST00000426431 KANK4Q5T7N3 995 aaPredicted RBP13.11□□□□□ -0.31
SP1-202ENST00000426431 CDK11BP21127 795 aaKnown RBP13.11□□□□□ -0.31
SP1-202ENST00000426431 NPHP1O15259 732 aa13.09□□□□□ -0.31
SP1-202ENST00000426431 IPO8O15397 1037 aaKnown RBP13.09□□□□□ -0.31
SP1-202ENST00000426431 MYOM3Q5VTT5 1437 aa13.08□□□□□ -0.32
SP1-202ENST00000426431 ARXQ96QS3 562 aa13.08□□□□□ -0.32
SP1-202ENST00000426431 PHLDB1Q86UU1 1377 aa13.08□□□□□ -0.32
SP1-202ENST00000426431 CC2D1BQ5T0F9 858 aaKnown RBP13.08□□□□□ -0.32
SP1-202ENST00000426431 CCDC144AA2RUR9 1427 aa13.07□□□□□ -0.32
SP1-202ENST00000426431 SENP3Q9H4L4 574 aaPredicted RBP13.07□□□□□ -0.32
SP1-202ENST00000426431 LAS1LQ9Y4W2 734 aaKnown RBP13.07□□□□□ -0.32
SP1-202ENST00000426431 MRC2Q9UBG0 1479 aa13.07□□□□□ -0.32
SP1-202ENST00000426431 PLEKHG5O94827 1062 aa13.07□□□□□ -0.32
SP1-202ENST00000426431 HNRNPMP52272 730 aaKnown RBP eCLIP13.07□□□□□ -0.32
SP1-202ENST00000426431 IFT140Q96RY7 1462 aa13.07□□□□□ -0.32
SP1-202ENST00000426431 CFTRP13569 1480 aa13.07□□□□□ -0.32
SP1-202ENST00000426431 VGFO15240 615 aaPredicted RBP13.07□□□□□ -0.32
SP1-202ENST00000426431 IGF1RP08069 1367 aa13.07□□□□□ -0.32
SP1-202ENST00000426431 ERICH6BQ5W0A0 696 aa13.06□□□□□ -0.32
SP1-202ENST00000426431 HSPA5P11021 654 aaKnown RBP13.05□□□□□ -0.32
SP1-202ENST00000426431 LMOD3Q0VAK6 560 aa13.05□□□□□ -0.32
SP1-202ENST00000426431 PPP4R2Q9NY27 417 aa13.05□□□□□ -0.32
SP1-202ENST00000426431 ERICH3Q5RHP9 1530 aa13.05□□□□□ -0.32
SP1-202ENST00000426431 OS9Q13438 667 aaPredicted RBP13.04□□□□□ -0.32
SP1-202ENST00000426431 NEUROD2Q15784 382 aa13.04□□□□□ -0.32
SP1-202ENST00000426431 ZRSR1Q15695 479 aaKnown RBP13.04□□□□□ -0.32
SP1-202ENST00000426431 GOLGA2Q08379 1002 aa13.03□□□□□ -0.32
SP1-202ENST00000426431 STK26Q9P289 416 aa13.03□□□□□ -0.32
SP1-202ENST00000426431 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.03□□□□□ -0.32
SP1-202ENST00000426431 TNNT2P45379 298 aaPredicted RBP13.02□□□□□ -0.33
SP1-202ENST00000426431 EFCAB5A4FU69 1503 aa13.01□□□□□ -0.33
SP1-202ENST00000426431 PLEKHH2Q8IVE3 1493 aa12.99□□□□□ -0.33
SP1-202ENST00000426431 MCCP23508 829 aa12.99□□□□□ -0.33
SP1-202ENST00000426431 SYNJ2O15056 1496 aa12.99□□□□□ -0.33
SP1-202ENST00000426431 KIF21BO75037 1637 aa12.99□□□□□ -0.33
SP1-202ENST00000426431 FRAT1Q92837 279 aaPredicted RBP12.99□□□□□ -0.33
SP1-202ENST00000426431 CSB-PGBD3P0DP91 1061 aa12.98□□□□□ -0.33
SP1-202ENST00000426431 FYCO1Q9BQS8 1478 aa12.98□□□□□ -0.33
SP1-202ENST00000426431 CASKIN1Q8WXD9 1431 aa12.98□□□□□ -0.33
SP1-202ENST00000426431 PDE3BQ13370 1112 aa12.97□□□□□ -0.33
SP1-202ENST00000426431 NGEFQ8N5V2 710 aa12.97□□□□□ -0.33
SP1-202ENST00000426431 PAK3O75914 559 aaPredicted RBP12.97□□□□□ -0.33
SP1-202ENST00000426431 NGDNQ8NEJ9 315 aaKnown RBP12.97□□□□□ -0.33
SP1-202ENST00000426431 SAFB2Q14151 953 aaKnown RBP eCLIP12.97□□□□□ -0.33
SP1-202ENST00000426431 RAD54L2Q9Y4B4 1467 aa12.96□□□□□ -0.33
SP1-202ENST00000426431 CC2D2AQ9P2K1 1620 aa12.96□□□□□ -0.33
SP1-202ENST00000426431 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.33
SP1-202ENST00000426431 NLRP13Q86W25 1043 aa12.96□□□□□ -0.33
SP1-202ENST00000426431 EVC2Q86UK5 1308 aa12.96□□□□□ -0.33
SP1-202ENST00000426431 U2AF1L5P0DN76 240 aaPredicted RBP12.95□□□□□ -0.34
SP1-202ENST00000426431 U2AF1Q01081 240 aaKnown RBP eCLIP12.95□□□□□ -0.34
SP1-202ENST00000426431 TMX4Q9H1E5 349 aaPredicted RBP12.95□□□□□ -0.34
SP1-202ENST00000426431 SUPT16HQ9Y5B9 1047 aaKnown RBP12.95□□□□□ -0.34
SP1-202ENST00000426431 L3MBTL2Q969R5 705 aa12.95□□□□□ -0.34
SP1-202ENST00000426431 STK31Q9BXU1 1019 aa12.95□□□□□ -0.34
SP1-202ENST00000426431 KIF15Q9NS87 1388 aa12.94□□□□□ -0.34
SP1-202ENST00000426431 KCNJ4P48050 445 aa12.94□□□□□ -0.34
SP1-202ENST00000426431 FGD1P98174 961 aa12.93□□□□□ -0.34
SP1-202ENST00000426431 PRDM2Q13029 1718 aa12.92□□□□□ -0.34
SP1-202ENST00000426431 DNMBPQ6XZF7 1577 aa12.92□□□□□ -0.34
SP1-202ENST00000426431 FGD6Q6ZV73 1430 aa12.92□□□□□ -0.34
SP1-202ENST00000426431 LAMC3Q9Y6N6 1575 aa12.92□□□□□ -0.34
SP1-202ENST00000426431 IRX6P78412 446 aaPredicted RBP12.92□□□□□ -0.34
SP1-202ENST00000426431 CGNL1Q0VF96 1302 aa12.91□□□□□ -0.34
SP1-202ENST00000426431 AQRO60306 1485 aaKnown RBP eCLIP12.91□□□□□ -0.348e-7■■■■■ 28.7
SP1-202ENST00000426431 HMMRO75330 724 aa12.91□□□□□ -0.34
SP1-202ENST00000426431 FOXD1Q16676 465 aa12.9□□□□□ -0.34
SP1-202ENST00000426431 TOP2BQ02880 1626 aa12.9□□□□□ -0.34
SP1-202ENST00000426431 AMPHP49418 695 aa12.9□□□□□ -0.34
SP1-202ENST00000426431 RWDD1Q9H446 243 aaPredicted RBP12.9□□□□□ -0.34
SP1-202ENST00000426431 FAM69CQ0P6D2 419 aa12.9□□□□□ -0.35
SP1-202ENST00000426431 TOPBP1Q92547 1522 aa12.89□□□□□ -0.35
SP1-202ENST00000426431 SOX12O15370 315 aa12.89□□□□□ -0.35
SP1-202ENST00000426431 GPATCH3Q96I76 525 aa12.89□□□□□ -0.35
SP1-202ENST00000426431 GOLGA6L6A8MZA4 724 aa12.88□□□□□ -0.35
SP1-202ENST00000426431 PMFBP1Q8TBY8 1022 aa12.88□□□□□ -0.35
SP1-202ENST00000426431 RUSC2Q8N2Y8 1516 aa12.87□□□□□ -0.35
SP1-202ENST00000426431 TRIM44Q96DX7 344 aaPredicted RBP12.87□□□□□ -0.35
SP1-202ENST00000426431 LRRC9Q6ZRR7 1453 aa12.87□□□□□ -0.35
SP1-202ENST00000426431 NRDCO43847 1150 aa12.87□□□□□ -0.35
SP1-202ENST00000426431 MIA2Q96PC5 1412 aa12.87□□□□□ -0.35
SP1-202ENST00000426431 PTMSP20962 102 aa12.87□□□□□ -0.35
SP1-202ENST00000426431 COG3Q96JB2 828 aa12.86□□□□□ -0.35
SP1-202ENST00000426431 PRG4Q92954 1404 aaPredicted RBP12.86□□□□□ -0.35
SP1-202ENST00000426431 KIAA1211Q6ZU35 1233 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms