RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PTPRGP23470 1445 aa9.16□□□□□ -0.94
HMGB3-202ENST00000419110 ATP1B4Q9UN42 357 aaPredicted RBP9.16□□□□□ -0.94
HMGB3-202ENST00000419110 UHRF1BP1LA0JNW5 1464 aa9.15□□□□□ -0.94
HMGB3-202ENST00000419110 UACAQ9BZF9 1416 aa9.15□□□□□ -0.94
HMGB3-202ENST00000419110 RRBP1Q9P2E9 1410 aaKnown RBP9.15□□□□□ -0.94
HMGB3-202ENST00000419110 PPARGC1BQ86YN6 1023 aaKnown RBP9.15□□□□□ -0.94
HMGB3-202ENST00000419110 PREX2Q70Z35 1606 aa9.15□□□□□ -0.94
HMGB3-202ENST00000419110 PTPN23Q9H3S7 1636 aa9.15□□□□□ -0.94
HMGB3-202ENST00000419110 CROCC2H7BZ55 1655 aa9.14□□□□□ -0.95
HMGB3-202ENST00000419110 ZBTB12Q9Y330 459 aaPredicted RBP9.14□□□□□ -0.95
HMGB3-202ENST00000419110 TROQ12816 1431 aaPredicted RBP9.14□□□□□ -0.95
HMGB3-202ENST00000419110 PCGF6Q9BYE7 350 aa9.13□□□□□ -0.95
HMGB3-202ENST00000419110 ADGBQ8N7X0 1667 aa9.13□□□□□ -0.95
HMGB3-202ENST00000419110 MYOM3Q5VTT5 1437 aa9.13□□□□□ -0.95
HMGB3-202ENST00000419110 RIMBP3CA6NJZ7 1639 aa9.13□□□□□ -0.95
HMGB3-202ENST00000419110 RIMBP3BA6NNM3 1639 aa9.13□□□□□ -0.95
HMGB3-202ENST00000419110 RIMBP3Q9UFD9 1639 aa9.13□□□□□ -0.95
HMGB3-202ENST00000419110 ATXN8OSP0DMR3 200 aa9.12□□□□□ -0.95
HMGB3-202ENST00000419110 GCC2Q8IWJ2 1684 aa9.11□□□□□ -0.95
HMGB3-202ENST00000419110 FGD6Q6ZV73 1430 aa9.11□□□□□ -0.95
HMGB3-202ENST00000419110 TTC37Q6PGP7 1564 aa9.11□□□□□ -0.95
HMGB3-202ENST00000419110 CCNB3Q8WWL7 1395 aa9.11□□□□□ -0.95
HMGB3-202ENST00000419110 KDM5BQ9UGL1 1544 aa9.1□□□□□ -0.95
HMGB3-202ENST00000419110 KANK4Q5T7N3 995 aaPredicted RBP9.1□□□□□ -0.95
HMGB3-202ENST00000419110 OSCARQ8IYS5 282 aa9.1□□□□□ -0.95
HMGB3-202ENST00000419110 PHLDB1Q86UU1 1377 aa9.1□□□□□ -0.95
HMGB3-202ENST00000419110 CDK11AQ9UQ88 783 aaPredicted RBP9.09□□□□□ -0.95
HMGB3-202ENST00000419110 DNMT1P26358 1616 aaKnown RBP9.09□□□□□ -0.95
HMGB3-202ENST00000419110 ATP10BO94823 1461 aa9.08□□□□□ -0.96
HMGB3-202ENST00000419110 CDC42BPBQ9Y5S2 1711 aa9.08□□□□□ -0.96
HMGB3-202ENST00000419110 TCOF1Q13428 1488 aaKnown RBP9.08□□□□□ -0.96
HMGB3-202ENST00000419110 CFAP74Q9C0B2 1584 aa9.07□□□□□ -0.96
HMGB3-202ENST00000419110 MIA2Q96PC5 1412 aa9.06□□□□□ -0.96
HMGB3-202ENST00000419110 ARID3CA6NKF2 412 aa9.06□□□□□ -0.96
HMGB3-202ENST00000419110 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.06□□□□□ -0.966e-8■■■■□ 21.9
HMGB3-202ENST00000419110 ABCA9Q8IUA7 1624 aa9.05□□□□□ -0.96
HMGB3-202ENST00000419110 CAMSAP2Q08AD1 1489 aa9.05□□□□□ -0.96
HMGB3-202ENST00000419110 ABCC10Q5T3U5 1492 aa9.05□□□□□ -0.96
HMGB3-202ENST00000419110 WDR7Q9Y4E6 1490 aa9.05□□□□□ -0.96
HMGB3-202ENST00000419110 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.04□□□□□ -0.967e-7■■□□□ 14.3
HMGB3-202ENST00000419110 ARAP3Q8WWN8 1544 aa9.04□□□□□ -0.96
HMGB3-202ENST00000419110 AKT1S1Q96B36 256 aa9.03□□□□□ -0.96
HMGB3-202ENST00000419110 MAPKBP1O60336 1514 aa9.03□□□□□ -0.96
HMGB3-202ENST00000419110 ARHGAP5Q13017 1502 aa9.03□□□□□ -0.96
HMGB3-202ENST00000419110 ARHGEF5Q12774 1597 aa9.03□□□□□ -0.96
HMGB3-202ENST00000419110 SAMD9LQ8IVG5 1584 aa9.03□□□□□ -0.96
HMGB3-202ENST00000419110 CHRDL2Q6WN34 429 aa9.02□□□□□ -0.97
HMGB3-202ENST00000419110 AKNAQ7Z591 1439 aa9.01□□□□□ -0.97
HMGB3-202ENST00000419110 SHANK2Q9UPX8 1470 aa9.01□□□□□ -0.97
HMGB3-202ENST00000419110 GPATCH8Q9UKJ3 1502 aaKnown RBP9□□□□□ -0.97
HMGB3-202ENST00000419110 ABCC1P33527 1531 aa9□□□□□ -0.97
HMGB3-202ENST00000419110 PLEKHD1A6NEE1 506 aa8.99□□□□□ -0.97
HMGB3-202ENST00000419110 PLEKHH2Q8IVE3 1493 aa8.99□□□□□ -0.97
HMGB3-202ENST00000419110 SYCP2Q9BX26 1530 aa8.99□□□□□ -0.97
HMGB3-202ENST00000419110 FAM50AQ14320 339 aaKnown RBP8.98□□□□□ -0.97
HMGB3-202ENST00000419110 PLXNC1O60486 1568 aa8.98□□□□□ -0.97
HMGB3-202ENST00000419110 MAST1Q9Y2H9 1570 aa8.98□□□□□ -0.97
HMGB3-202ENST00000419110 MAP3K4Q9Y6R4 1608 aa8.98□□□□□ -0.97
HMGB3-202ENST00000419110 DAPK1P53355 1430 aa8.97□□□□□ -0.97
HMGB3-202ENST00000419110 ASXL2Q76L83 1435 aa8.97□□□□□ -0.97
HMGB3-202ENST00000419110 CCDC141Q6ZP82 1450 aa8.96□□□□□ -0.97
HMGB3-202ENST00000419110 DIP2BQ9P265 1576 aa8.96□□□□□ -0.97
HMGB3-202ENST00000419110 HFM1A2PYH4 1435 aa8.95□□□□□ -0.98
HMGB3-202ENST00000419110 ADGRL2O95490 1459 aa8.95□□□□□ -0.98
HMGB3-202ENST00000419110 GLI2P10070 1586 aa8.95□□□□□ -0.98
HMGB3-202ENST00000419110 KIF13AQ9H1H9 1805 aa8.94□□□□□ -0.98
HMGB3-202ENST00000419110 REM2Q8IYK8 340 aaPredicted RBP8.94□□□□□ -0.98
HMGB3-202ENST00000419110 INO80Q9ULG1 1556 aaPredicted RBP8.94□□□□□ -0.98
HMGB3-202ENST00000419110 ZFYVE16Q7Z3T8 1539 aa8.92□□□□□ -0.98
HMGB3-202ENST00000419110 NPM1P06748 294 aaKnown RBP eCLIP8.92□□□□□ -0.98
HMGB3-202ENST00000419110 CFDP1Q9UEE9 299 aaPredicted RBP8.92□□□□□ -0.98
HMGB3-202ENST00000419110 TSPOAP1O95153 1857 aa8.91□□□□□ -0.98
HMGB3-202ENST00000419110 FANCAO15360 1455 aa8.91□□□□□ -0.98
HMGB3-202ENST00000419110 PLCH2O75038 1416 aa8.91□□□□□ -0.98
HMGB3-202ENST00000419110 C9orf84Q5VXU9 1444 aa8.91□□□□□ -0.98
HMGB3-202ENST00000419110 SETD5Q9C0A6 1442 aa8.91□□□□□ -0.98
HMGB3-202ENST00000419110 ROCK1Q13464 1354 aa8.91□□□□□ -0.98
HMGB3-202ENST00000419110 ITGAEP38570 1179 aa8.91□□□□□ -0.98
HMGB3-202ENST00000419110 HECW2Q9P2P5 1572 aa8.9□□□□□ -0.98
HMGB3-202ENST00000419110 ABCC5O15440 1437 aa8.9□□□□□ -0.98
HMGB3-202ENST00000419110 RAB3GAP2Q9H2M9 1393 aa8.9□□□□□ -0.98
HMGB3-202ENST00000419110 NAIPQ13075 1403 aa8.89□□□□□ -0.99
HMGB3-202ENST00000419110 PTPRKQ15262 1439 aa8.89□□□□□ -0.99
HMGB3-202ENST00000419110 KIAA1107Q9UPP5 1409 aa8.89□□□□□ -0.99
HMGB3-202ENST00000419110 RICTORQ6R327 1708 aa8.89□□□□□ -0.99
HMGB3-202ENST00000419110 PPRC1Q5VV67 1664 aaKnown RBP8.89□□□□□ -0.99
HMGB3-202ENST00000419110 EIF2AK4Q9P2K8 1649 aaKnown RBP8.89□□□□□ -0.99
HMGB3-202ENST00000419110 UNC13BO14795 1591 aa8.89□□□□□ -0.99
HMGB3-202ENST00000419110 ATP7AQ04656 1500 aa8.89□□□□□ -0.99
HMGB3-202ENST00000419110 ADGRL1O94910 1474 aa8.89□□□□□ -0.99
HMGB3-202ENST00000419110 KDM6BO15054 1643 aa8.88□□□□□ -0.99
HMGB3-202ENST00000419110 KDM5CP41229 1560 aa8.88□□□□□ -0.99
HMGB3-202ENST00000419110 NEO1Q92859 1461 aa8.88□□□□□ -0.99
HMGB3-202ENST00000419110 MBD5Q9P267 1494 aa8.88□□□□□ -0.99
HMGB3-202ENST00000419110 ANKRD30AQ9BXX3 1397 aa8.86□□□□□ -0.99
HMGB3-202ENST00000419110 ZNF518AQ6AHZ1 1483 aa8.86□□□□□ -0.99
HMGB3-202ENST00000419110 TEX14Q8IWB6 1497 aa8.86□□□□□ -0.99
HMGB3-202ENST00000419110 HRCP23327 699 aa8.86□□□□□ -0.99
HMGB3-202ENST00000419110 ZEB1P37275 1124 aaPredicted RBP8.86□□□□□ -0.99
HMGB3-202ENST00000419110 CCER1Q8TC90 406 aaPredicted RBP8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms