RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 RAPGEF3O95398 923 aa10.1□□□□□ -0.79
USP54-202ENST00000413442 RICTORQ6R327 1708 aa10.1□□□□□ -0.79
USP54-202ENST00000413442 ADGRL1O94910 1474 aa10.1□□□□□ -0.79
USP54-202ENST00000413442 VPS8Q8N3P4 1428 aa10.09□□□□□ -0.79
USP54-202ENST00000413442 ZNF518AQ6AHZ1 1483 aa10.09□□□□□ -0.79
USP54-202ENST00000413442 PLEKHH2Q8IVE3 1493 aa10.09□□□□□ -0.79
USP54-202ENST00000413442 ARHGAP5Q13017 1502 aa10.08□□□□□ -0.8
USP54-202ENST00000413442 ZMYM4Q5VZL5 1548 aa10.08□□□□□ -0.8
USP54-202ENST00000413442 CDC42BPBQ9Y5S2 1711 aa10.08□□□□□ -0.8
USP54-202ENST00000413442 KDM4FA0A1W2PPD8 638 aa10.08□□□□□ -0.8
USP54-202ENST00000413442 APLP2Q06481 763 aa10.08□□□□□ -0.8
USP54-202ENST00000413442 POGZQ7Z3K3 1410 aa10.07□□□□□ -0.8
USP54-202ENST00000413442 KIAA1107Q9UPP5 1409 aa10.07□□□□□ -0.8
USP54-202ENST00000413442 PREX2Q70Z35 1606 aa10.07□□□□□ -0.8
USP54-202ENST00000413442 CCNB3Q8WWL7 1395 aa10.07□□□□□ -0.8
USP54-202ENST00000413442 CFDP1Q9UEE9 299 aaPredicted RBP10.06□□□□□ -0.8
USP54-202ENST00000413442 CDC42BPAQ5VT25 1732 aa10.06□□□□□ -0.8
USP54-202ENST00000413442 EHBP1L1Q8N3D4 1523 aa10.06□□□□□ -0.8
USP54-202ENST00000413442 MLH3Q9UHC1 1453 aa10.05□□□□□ -0.8
USP54-202ENST00000413442 GPATCH8Q9UKJ3 1502 aaKnown RBP10.05□□□□□ -0.8
USP54-202ENST00000413442 ATP10AO60312 1499 aa10.04□□□□□ -0.8
USP54-202ENST00000413442 ITSN2Q9NZM3 1697 aa10.04□□□□□ -0.8
USP54-202ENST00000413442 FRMPD1Q5SYB0 1578 aa10.04□□□□□ -0.8
USP54-202ENST00000413442 SUPT6HQ7KZ85 1726 aaKnown RBP10.04□□□□□ -0.8
USP54-202ENST00000413442 ZFYVE16Q7Z3T8 1539 aa10.03□□□□□ -0.8
USP54-202ENST00000413442 KDM5CP41229 1560 aa10.03□□□□□ -0.8
USP54-202ENST00000413442 TIAM1Q13009 1591 aa10.02□□□□□ -0.81
USP54-202ENST00000413442 AFAP1Q8N556 730 aa10.02□□□□□ -0.81
USP54-202ENST00000413442 ARID4BQ4LE39 1312 aaPredicted RBP10.02□□□□□ -0.81
USP54-202ENST00000413442 ARHGEF40Q8TER5 1519 aa10.02□□□□□ -0.81
USP54-202ENST00000413442 REREQ9P2R6 1566 aa10.01□□□□□ -0.81
USP54-202ENST00000413442 PPP6R1Q9UPN7 881 aa10.01□□□□□ -0.81
USP54-202ENST00000413442 ABCC1P33527 1531 aa10.01□□□□□ -0.81
USP54-202ENST00000413442 C9orf84Q5VXU9 1444 aa10□□□□□ -0.81
USP54-202ENST00000413442 LRRC9Q6ZRR7 1453 aa10□□□□□ -0.81
USP54-202ENST00000413442 MYT1LQ9UL68 1186 aa10□□□□□ -0.81
USP54-202ENST00000413442 ZNF777Q9ULD5 760 aaPredicted RBP10□□□□□ -0.81
USP54-202ENST00000413442 ADAMTSL3P82987 1691 aa9.99□□□□□ -0.81
USP54-202ENST00000413442 RTEL1-TNFRSF6BF6WH68 1400 aa9.99□□□□□ -0.81
USP54-202ENST00000413442 MIA2Q96PC5 1412 aa9.99□□□□□ -0.81
USP54-202ENST00000413442 BCORL1Q5H9F3 1711 aa9.99□□□□□ -0.81
USP54-202ENST00000413442 HECW2Q9P2P5 1572 aa9.99□□□□□ -0.81
USP54-202ENST00000413442 SPAG9O60271 1321 aaKnown RBP9.99□□□□□ -0.81
USP54-202ENST00000413442 AGLP35573 1532 aa9.98□□□□□ -0.81
USP54-202ENST00000413442 TSPY4P0CV99 314 aa9.98□□□□□ -0.81
USP54-202ENST00000413442 TSPY10P0CW01 314 aa9.98□□□□□ -0.81
USP54-202ENST00000413442 NCOA2Q15596 1464 aa9.98□□□□□ -0.81
USP54-202ENST00000413442 HNRNPMP52272 730 aaKnown RBP eCLIP9.97□□□□□ -0.813e-6■■■■□ 21.2
USP54-202ENST00000413442 SAMD9LQ8IVG5 1584 aa9.97□□□□□ -0.81
USP54-202ENST00000413442 YEATS2Q9ULM3 1422 aa9.96□□□□□ -0.82
USP54-202ENST00000413442 TRAPPC8Q9Y2L5 1435 aa9.96□□□□□ -0.82
USP54-202ENST00000413442 ARHGEF12Q9NZN5 1544 aa9.96□□□□□ -0.82
USP54-202ENST00000413442 SETD1BQ9UPS6 1966 aaKnown RBP9.95□□□□□ -0.82
USP54-202ENST00000413442 ESF1Q9H501 851 aaKnown RBP9.95□□□□□ -0.82
USP54-202ENST00000413442 KIDINS220Q9ULH0 1771 aa9.95□□□□□ -0.82
USP54-202ENST00000413442 MBD5Q9P267 1494 aa9.94□□□□□ -0.82
USP54-202ENST00000413442 ARHGEF5Q12774 1597 aa9.93□□□□□ -0.82
USP54-202ENST00000413442 PTPRMP28827 1452 aa9.93□□□□□ -0.82
USP54-202ENST00000413442 MYOM3Q5VTT5 1437 aa9.93□□□□□ -0.82
USP54-202ENST00000413442 CNTLNQ9NXG0 1405 aa9.93□□□□□ -0.82
USP54-202ENST00000413442 ADGBQ8N7X0 1667 aa9.93□□□□□ -0.82
USP54-202ENST00000413442 DIP2CQ9Y2E4 1556 aa9.92□□□□□ -0.82
USP54-202ENST00000413442 SYCP2Q9BX26 1530 aa9.92□□□□□ -0.82
USP54-202ENST00000413442 KANK4Q5T7N3 995 aaPredicted RBP9.92□□□□□ -0.82
USP54-202ENST00000413442 ATP7AQ04656 1500 aa9.92□□□□□ -0.82
USP54-202ENST00000413442 CCDC141Q6ZP82 1450 aa9.91□□□□□ -0.82
USP54-202ENST00000413442 DHX29Q7Z478 1369 aaKnown RBP9.9□□□□□ -0.82
USP54-202ENST00000413442 INO80Q9ULG1 1556 aaPredicted RBP9.9□□□□□ -0.82
USP54-202ENST00000413442 A2MP01023 1474 aa9.9□□□□□ -0.83
USP54-202ENST00000413442 CAMSAP2Q08AD1 1489 aa9.9□□□□□ -0.83
USP54-202ENST00000413442 ABCA6Q8N139 1617 aa9.89□□□□□ -0.83
USP54-202ENST00000413442 ZNF644Q9H582 1327 aaPredicted RBP9.89□□□□□ -0.83
USP54-202ENST00000413442 FER1L4A9Z1Z3 1794 aa9.89□□□□□ -0.83
USP54-202ENST00000413442 FAM135AQ9P2D6 1515 aa9.89□□□□□ -0.83
USP54-202ENST00000413442 MADDQ8WXG6 1647 aa9.89□□□□□ -0.83
USP54-202ENST00000413442 MAST1Q9Y2H9 1570 aa9.88□□□□□ -0.83
USP54-202ENST00000413442 RIMS1Q86UR5 1692 aaKnown RBP9.87□□□□□ -0.83
USP54-202ENST00000413442 MLECQ14165 292 aa9.87□□□□□ -0.83
USP54-202ENST00000413442 MROH2AA6NES4 1674 aa9.87□□□□□ -0.83
USP54-202ENST00000413442 PLXNC1O60486 1568 aa9.86□□□□□ -0.83
USP54-202ENST00000413442 SIGLEC1Q9BZZ2 1709 aa9.85□□□□□ -0.83
USP54-202ENST00000413442 DMRT2Q9Y5R5 561 aa9.85□□□□□ -0.83
USP54-202ENST00000413442 TCOF1Q13428 1488 aaKnown RBP9.85□□□□□ -0.83
USP54-202ENST00000413442 NPATQ14207 1427 aa9.84□□□□□ -0.83
USP54-202ENST00000413442 FGD6Q6ZV73 1430 aa9.84□□□□□ -0.83
USP54-202ENST00000413442 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP54-202ENST00000413442 SHANK2Q9UPX8 1470 aa9.84□□□□□ -0.83
USP54-202ENST00000413442 PTPN23Q9H3S7 1636 aa9.83□□□□□ -0.84
USP54-202ENST00000413442 GGT6Q6P531 493 aa9.83□□□□□ -0.84
USP54-202ENST00000413442 ZMYM3Q14202 1370 aa9.83□□□□□ -0.84
USP54-202ENST00000413442 KIF3BO15066 747 aa9.82□□□□□ -0.84
USP54-202ENST00000413442 EIF2AK4Q9P2K8 1649 aaKnown RBP9.82□□□□□ -0.84
USP54-202ENST00000413442 DUOX2Q9NRD8 1548 aa9.82□□□□□ -0.84
USP54-202ENST00000413442 PREX1Q8TCU6 1659 aa9.81□□□□□ -0.84
USP54-202ENST00000413442 ANKRD30AQ9BXX3 1397 aa9.81□□□□□ -0.84
USP54-202ENST00000413442 FOXD1Q16676 465 aa9.81□□□□□ -0.84
USP54-202ENST00000413442 DNMT1P26358 1616 aaKnown RBP9.81□□□□□ -0.84
USP54-202ENST00000413442 WASHC2CQ9Y4E1 1318 aa9.81□□□□□ -0.84
USP54-202ENST00000413442 C3P01024 1663 aa9.8□□□□□ -0.84
USP54-202ENST00000413442 ABCC5O15440 1437 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms