RNA–Protein interactions for RNA: ENST00000412507.1

TRIM56-202, Transcript of tripartite motif containing 56, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene TRIM56, Length 1,129 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-202ENST00000412507 ADGRL1O94910 1474 aa30.1■■■□□ 2.41
TRIM56-202ENST00000412507 EFCAB2Q5VUJ9 269 aa30.08■■■□□ 2.41
TRIM56-202ENST00000412507 SCAPERQ9BY12 1400 aa30.05■■■□□ 2.4
TRIM56-202ENST00000412507 VPS8Q8N3P4 1428 aa30.04■■■□□ 2.4
TRIM56-202ENST00000412507 MTUS2Q5JR59 1369 aa30.03■■■□□ 2.4
TRIM56-202ENST00000412507 ZMYM4Q5VZL5 1548 aa30■■■□□ 2.39
TRIM56-202ENST00000412507 EHBP1L1Q8N3D4 1523 aa29.99■■■□□ 2.39
TRIM56-202ENST00000412507 POGZQ7Z3K3 1410 aa29.98■■■□□ 2.39
TRIM56-202ENST00000412507 ARHGEF40Q8TER5 1519 aa29.98■■■□□ 2.39
TRIM56-202ENST00000412507 TIAM1Q13009 1591 aa29.97■■■□□ 2.39
TRIM56-202ENST00000412507 ITSN2Q9NZM3 1697 aa29.95■■■□□ 2.39
TRIM56-202ENST00000412507 GPATCH8Q9UKJ3 1502 aaKnown RBP29.94■■■□□ 2.38
TRIM56-202ENST00000412507 ZFYVE16Q7Z3T8 1539 aa29.92■■■□□ 2.38
TRIM56-202ENST00000412507 ABCC1P33527 1531 aa29.91■■■□□ 2.38
TRIM56-202ENST00000412507 SUPT6HQ7KZ85 1726 aaKnown RBP29.91■■■□□ 2.38
TRIM56-202ENST00000412507 SAMD9LQ8IVG5 1584 aa29.9■■■□□ 2.38
TRIM56-202ENST00000412507 MAGI2Q86UL8 1455 aa29.89■■■□□ 2.38
TRIM56-202ENST00000412507 CCNB3Q8WWL7 1395 aa29.89■■■□□ 2.37
TRIM56-202ENST00000412507 YEATS2Q9ULM3 1422 aa29.88■■■□□ 2.37
TRIM56-202ENST00000412507 ZNF518AQ6AHZ1 1483 aa29.88■■■□□ 2.37
TRIM56-202ENST00000412507 ARHGEF12Q9NZN5 1544 aa29.87■■■□□ 2.37
TRIM56-202ENST00000412507 KDM5CP41229 1560 aa29.87■■■□□ 2.37
TRIM56-202ENST00000412507 SIGLEC1Q9BZZ2 1709 aa29.86■■■□□ 2.37
TRIM56-202ENST00000412507 ZNF777Q9ULD5 760 aaPredicted RBP29.86■■■□□ 2.37
TRIM56-202ENST00000412507 BCORL1Q5H9F3 1711 aa29.85■■■□□ 2.37
TRIM56-202ENST00000412507 AFAP1Q8N556 730 aa29.85■■■□□ 2.37
TRIM56-202ENST00000412507 HECW2Q9P2P5 1572 aa29.82■■■□□ 2.36
TRIM56-202ENST00000412507 ADAMTSL3P82987 1691 aa29.82■■■□□ 2.36
TRIM56-202ENST00000412507 TRAPPC8Q9Y2L5 1435 aa29.81■■■□□ 2.36
TRIM56-202ENST00000412507 ARID4BQ4LE39 1312 aaPredicted RBP29.81■■■□□ 2.36
TRIM56-202ENST00000412507 CFDP1Q9UEE9 299 aaPredicted RBP29.81■■■□□ 2.36
TRIM56-202ENST00000412507 MAP3K1Q13233 1512 aa29.8■■■□□ 2.36
TRIM56-202ENST00000412507 SYCP2Q9BX26 1530 aa29.8■■■□□ 2.36
TRIM56-202ENST00000412507 NCOA2Q15596 1464 aa29.8■■■□□ 2.36
TRIM56-202ENST00000412507 LRRC9Q6ZRR7 1453 aa29.8■■■□□ 2.36
TRIM56-202ENST00000412507 ATP10AO60312 1499 aa29.75■■■□□ 2.35
TRIM56-202ENST00000412507 MYT1LQ9UL68 1186 aa29.75■■■□□ 2.35
TRIM56-202ENST00000412507 KIDINS220Q9ULH0 1771 aa29.75■■■□□ 2.35
TRIM56-202ENST00000412507 ABCA6Q8N139 1617 aa29.74■■■□□ 2.35
TRIM56-202ENST00000412507 DIP2CQ9Y2E4 1556 aa29.73■■■□□ 2.35
TRIM56-202ENST00000412507 MADDQ8WXG6 1647 aa29.73■■■□□ 2.35
TRIM56-202ENST00000412507 PLEKHH2Q8IVE3 1493 aa29.73■■■□□ 2.35
TRIM56-202ENST00000412507 MLH3Q9UHC1 1453 aa29.73■■■□□ 2.35
TRIM56-202ENST00000412507 HNRNPMP52272 730 aaKnown RBP eCLIP29.72■■■□□ 2.35
TRIM56-202ENST00000412507 KANK4Q5T7N3 995 aaPredicted RBP29.72■■■□□ 2.35
TRIM56-202ENST00000412507 C9orf84Q5VXU9 1444 aa29.71■■■□□ 2.35
TRIM56-202ENST00000412507 KIAA1107Q9UPP5 1409 aa29.7■■■□□ 2.34
TRIM56-202ENST00000412507 ZNF644Q9H582 1327 aaPredicted RBP29.69■■■□□ 2.34
TRIM56-202ENST00000412507 RIMS1Q86UR5 1692 aaKnown RBP29.68■■■□□ 2.34
TRIM56-202ENST00000412507 APLP2Q06481 763 aa29.66■■■□□ 2.34
TRIM56-202ENST00000412507 FER1L4A9Z1Z3 1794 aa29.65■■■□□ 2.34
TRIM56-202ENST00000412507 REREQ9P2R6 1566 aa29.63■■■□□ 2.33
TRIM56-202ENST00000412507 MLECQ14165 292 aa29.62■■■□□ 2.33
TRIM56-202ENST00000412507 PTPRMP28827 1452 aa29.61■■■□□ 2.33
TRIM56-202ENST00000412507 CAMSAP2Q08AD1 1489 aa29.61■■■□□ 2.33
TRIM56-202ENST00000412507 INO80Q9ULG1 1556 aaPredicted RBP29.61■■■□□ 2.33
TRIM56-202ENST00000412507 ATP7AQ04656 1500 aa29.61■■■□□ 2.33
TRIM56-202ENST00000412507 SPAG9O60271 1321 aaKnown RBP29.6■■■□□ 2.33
TRIM56-202ENST00000412507 MBD5Q9P267 1494 aa29.59■■■□□ 2.33
TRIM56-202ENST00000412507 MYOM3Q5VTT5 1437 aa29.53■■■□□ 2.32
TRIM56-202ENST00000412507 ADGBQ8N7X0 1667 aa29.52■■■□□ 2.32
TRIM56-202ENST00000412507 AGLP35573 1532 aa29.51■■■□□ 2.32
TRIM56-202ENST00000412507 CCDC141Q6ZP82 1450 aa29.49■■■□□ 2.31
TRIM56-202ENST00000412507 ARHGEF5Q12774 1597 aa29.49■■■□□ 2.31
TRIM56-202ENST00000412507 MIA2Q96PC5 1412 aa29.46■■■□□ 2.31
TRIM56-202ENST00000412507 PLXNC1O60486 1568 aa29.44■■■□□ 2.3
TRIM56-202ENST00000412507 RTEL1-TNFRSF6BF6WH68 1400 aa29.44■■■□□ 2.3
TRIM56-202ENST00000412507 A2MP01023 1474 aa29.43■■■□□ 2.3
TRIM56-202ENST00000412507 RSPH4AQ5TD94 716 aa29.43■■■□□ 2.3
TRIM56-202ENST00000412507 PLPPR3Q6T4P5 718 aa29.43■■■□□ 2.3
TRIM56-202ENST00000412507 PTPN23Q9H3S7 1636 aa29.42■■■□□ 2.3
TRIM56-202ENST00000412507 C3P01024 1663 aa29.35■■■□□ 2.29
TRIM56-202ENST00000412507 MAST1Q9Y2H9 1570 aa29.35■■■□□ 2.29
TRIM56-202ENST00000412507 TSPY4P0CV99 314 aa29.34■■■□□ 2.29
TRIM56-202ENST00000412507 TSPY10P0CW01 314 aa29.34■■■□□ 2.29
TRIM56-202ENST00000412507 CROCC2H7BZ55 1655 aa29.34■■■□□ 2.29
TRIM56-202ENST00000412507 FGD6Q6ZV73 1430 aa29.33■■■□□ 2.29
TRIM56-202ENST00000412507 CEBPAP49715 358 aaPredicted RBP29.3■■■□□ 2.28
TRIM56-202ENST00000412507 ESF1Q9H501 851 aaKnown RBP29.3■■■□□ 2.28
TRIM56-202ENST00000412507 CLTCQ00610 1675 aaKnown RBP29.3■■■□□ 2.28
TRIM56-202ENST00000412507 DHX29Q7Z478 1369 aaKnown RBP29.29■■■□□ 2.28
TRIM56-202ENST00000412507 SETD1BQ9UPS6 1966 aaKnown RBP29.29■■■□□ 2.28
TRIM56-202ENST00000412507 MROH2AA6NES4 1674 aa29.28■■■□□ 2.28
TRIM56-202ENST00000412507 TCOF1Q13428 1488 aaKnown RBP29.28■■■□□ 2.28
TRIM56-202ENST00000412507 DNMT1P26358 1616 aaKnown RBP29.27■■■□□ 2.28
TRIM56-202ENST00000412507 PREX1Q8TCU6 1659 aa29.25■■■□□ 2.27
TRIM56-202ENST00000412507 GGT6Q6P531 493 aa29.25■■■□□ 2.27
TRIM56-202ENST00000412507 LMTK3Q96Q04 1460 aa29.24■■■□□ 2.27
TRIM56-202ENST00000412507 CNTLNQ9NXG0 1405 aa29.24■■■□□ 2.27
TRIM56-202ENST00000412507 ABCC5O15440 1437 aa29.21■■■□□ 2.27
TRIM56-202ENST00000412507 DAPK1P53355 1430 aa29.2■■■□□ 2.26
TRIM56-202ENST00000412507 SHANK2Q9UPX8 1470 aa29.19■■■□□ 2.26
TRIM56-202ENST00000412507 KIF3BO15066 747 aa29.19■■■□□ 2.26
TRIM56-202ENST00000412507 PPARGC1BQ86YN6 1023 aaKnown RBP29.17■■■□□ 2.26
TRIM56-202ENST00000412507 EIF2AK4Q9P2K8 1649 aaKnown RBP29.15■■■□□ 2.26
TRIM56-202ENST00000412507 ZMYM3Q14202 1370 aa29.13■■■□□ 2.25
TRIM56-202ENST00000412507 DUOX2Q9NRD8 1548 aa29.12■■■□□ 2.25
TRIM56-202ENST00000412507 FAM50AQ14320 339 aaKnown RBP29.12■■■□□ 2.25
TRIM56-202ENST00000412507 PPP6R1Q9UPN7 881 aa29.12■■■□□ 2.25
TRIM56-202ENST00000412507 RNF17Q9BXT8 1623 aaKnown RBP29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms