RNA–Protein interactions for RNA: ENST00000410007.5

PBRM1-208, Transcript of polybromo 1, human

TSL 1 (best) BASIC

Gene PBRM1, Length 4,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PBRM1-208	ENST00000410007	STK26	Q9P289	416 aa		11.78	□□□□□ -0.52
PBRM1-208	ENST00000410007	HSPA5	P11021	654 aa	Known RBP	11.78	□□□□□ -0.52
PBRM1-208	ENST00000410007	SUPT16H	Q9Y5B9	1047 aa	Known RBP	11.78	□□□□□ -0.52
PBRM1-208	ENST00000410007	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.78	□□□□□ -0.52
PBRM1-208	ENST00000410007	FOXD1	Q16676	465 aa		11.77	□□□□□ -0.52
PBRM1-208	ENST00000410007	FRAT1	Q92837	279 aa	Predicted RBP	11.76	□□□□□ -0.53
PBRM1-208	ENST00000410007	ROCK2	O75116	1388 aa	Known RBP	11.76	□□□□□ -0.53
PBRM1-208	ENST00000410007	CCER2	I3L3R5	266 aa		11.75	□□□□□ -0.53
PBRM1-208	ENST00000410007	PTPRG	P23470	1445 aa		11.75	□□□□□ -0.53
PBRM1-208	ENST00000410007	KTN1	Q86UP2	1357 aa	Known RBP	11.74	□□□□□ -0.53
PBRM1-208	ENST00000410007	WASHC2C	Q9Y4E1	1318 aa		11.74	□□□□□ -0.53
PBRM1-208	ENST00000410007	SOX12	O15370	315 aa		11.74	□□□□□ -0.53
PBRM1-208	ENST00000410007	EIF3A	Q14152	1382 aa	Known RBP	11.74	□□□□□ -0.53
PBRM1-208	ENST00000410007	NCL	P19338	710 aa	Known RBP	11.73	□□□□□ -0.53
PBRM1-208	ENST00000410007	NPHP1	O15259	732 aa		11.73	□□□□□ -0.53
PBRM1-208	ENST00000410007	EID1	Q9Y6B2	187 aa		11.73	□□□□□ -0.53
PBRM1-208	ENST00000410007	PPP4R2	Q9NY27	417 aa		11.72	□□□□□ -0.53
PBRM1-208	ENST00000410007	GOLGA6L22	H0YM25	854 aa		11.72	□□□□□ -0.53
PBRM1-208	ENST00000410007	OSCAR	Q8IYS5	282 aa		11.72	□□□□□ -0.53
PBRM1-208	ENST00000410007	RTF1	Q92541	710 aa	Known RBP	11.71	□□□□□ -0.53
PBRM1-208	ENST00000410007	OS9	Q13438	667 aa	Predicted RBP	11.7	□□□□□ -0.54
PBRM1-208	ENST00000410007	NBR1	Q14596	966 aa		11.7	□□□□□ -0.54
PBRM1-208	ENST00000410007	ANP32E	Q9BTT0	268 aa		11.7	□□□□□ -0.54
PBRM1-208	ENST00000410007	RALBP1	Q15311	655 aa		11.7	□□□□□ -0.54
PBRM1-208	ENST00000410007	GAPVD1	Q14C86	1478 aa		11.69	□□□□□ -0.54
PBRM1-208	ENST00000410007	NCAPD3	P42695	1498 aa		11.68	□□□□□ -0.54
PBRM1-208	ENST00000410007	CALD1	Q05682	793 aa	Known RBP	11.68	□□□□□ -0.54
PBRM1-208	ENST00000410007	TERF2IP	Q9NYB0	399 aa		11.68	□□□□□ -0.54
PBRM1-208	ENST00000410007	PAK3	O75914	559 aa	Predicted RBP	11.68	□□□□□ -0.54
PBRM1-208	ENST00000410007	L3MBTL2	Q969R5	705 aa		11.68	□□□□□ -0.54
PBRM1-208	ENST00000410007	FGD5	Q6ZNL6	1462 aa		11.67	□□□□□ -0.54
PBRM1-208	ENST00000410007	RGS3	P49796	1198 aa		11.67	□□□□□ -0.54
PBRM1-208	ENST00000410007	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.66	□□□□□ -0.54
PBRM1-208	ENST00000410007	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
PBRM1-208	ENST00000410007	CYB5RL	Q6IPT4	315 aa		11.66	□□□□□ -0.54
PBRM1-208	ENST00000410007	CHMP4A	Q9BY43	222 aa		11.66	□□□□□ -0.54
PBRM1-208	ENST00000410007	CDK11B	P21127	795 aa	Known RBP	11.65	□□□□□ -0.54
PBRM1-208	ENST00000410007	IGF1R	P08069	1367 aa		11.65	□□□□□ -0.54
PBRM1-208	ENST00000410007	IPO8	O15397	1037 aa	Known RBP	11.64	□□□□□ -0.55
PBRM1-208	ENST00000410007	CSB-PGBD3	P0DP91	1061 aa		11.64	□□□□□ -0.55
PBRM1-208	ENST00000410007	RUSC2	Q8N2Y8	1516 aa		11.64	□□□□□ -0.55
PBRM1-208	ENST00000410007	GOLGA2	Q08379	1002 aa		11.63	□□□□□ -0.55
PBRM1-208	ENST00000410007	CCDC144A	A2RUR9	1427 aa		11.63	□□□□□ -0.55
PBRM1-208	ENST00000410007	UACA	Q9BZF9	1416 aa		11.63	□□□□□ -0.55
PBRM1-208	ENST00000410007	ZRSR1	Q15695	479 aa	Known RBP	11.63	□□□□□ -0.55
PBRM1-208	ENST00000410007	NGDN	Q8NEJ9	315 aa	Known RBP	11.62	□□□□□ -0.55
PBRM1-208	ENST00000410007	KCNJ4	P48050	445 aa		11.61	□□□□□ -0.55
PBRM1-208	ENST00000410007	VGF	O15240	615 aa	Predicted RBP	11.61	□□□□□ -0.55
PBRM1-208	ENST00000410007	RAD54L2	Q9Y4B4	1467 aa		11.61	□□□□□ -0.55
PBRM1-208	ENST00000410007	FGD1	P98174	961 aa		11.6	□□□□□ -0.55
PBRM1-208	ENST00000410007	CFAP44	Q96MT7	982 aa		11.6	□□□□□ -0.55
PBRM1-208	ENST00000410007	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.59	□□□□□ -0.55
PBRM1-208	ENST00000410007	NLRP13	Q86W25	1043 aa		11.59	□□□□□ -0.55
PBRM1-208	ENST00000410007	TRAK1	Q9UPV9	953 aa		11.58	□□□□□ -0.56
PBRM1-208	ENST00000410007	B4GALNT3	Q6L9W6	998 aa		11.57	□□□□□ -0.56
PBRM1-208	ENST00000410007	MYOM3	Q5VTT5	1437 aa		11.57	□□□□□ -0.56
PBRM1-208	ENST00000410007	LMOD3	Q0VAK6	560 aa		11.56	□□□□□ -0.56
PBRM1-208	ENST00000410007	STK31	Q9BXU1	1019 aa		11.56	□□□□□ -0.56
PBRM1-208	ENST00000410007	AMPH	P49418	695 aa		11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	TRIM44	Q96DX7	344 aa	Predicted RBP	11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	MCC	P23508	829 aa		11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	RCAN3	Q9UKA8	241 aa		11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	PHLDB1	Q86UU1	1377 aa		11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	HSP90AB1	P08238	724 aa	Known RBP	11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	HDAC5	Q9UQL6	1122 aa		11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	AQR	O60306	1485 aa	Known RBP eCLIP	11.55	□□□□□ -0.56	1e-6	■■■□□ 17.7
PBRM1-208	ENST00000410007	ERICH6B	Q5W0A0	696 aa		11.55	□□□□□ -0.56
PBRM1-208	ENST00000410007	GRIN2B	Q13224	1484 aa		11.54	□□□□□ -0.56
PBRM1-208	ENST00000410007	ST20-MTHFS	A0A0A6YYL1	179 aa		11.54	□□□□□ -0.56
PBRM1-208	ENST00000410007	FAM69C	Q0P6D2	419 aa		11.53	□□□□□ -0.56
PBRM1-208	ENST00000410007	DHX57	Q6P158	1386 aa	Known RBP	11.53	□□□□□ -0.56
PBRM1-208	ENST00000410007	EVC2	Q86UK5	1308 aa		11.53	□□□□□ -0.56
PBRM1-208	ENST00000410007	RWDD1	Q9H446	243 aa	Predicted RBP	11.52	□□□□□ -0.56
PBRM1-208	ENST00000410007	CCDC9	Q9Y3X0	531 aa	Known RBP	11.52	□□□□□ -0.56
PBRM1-208	ENST00000410007	KIF15	Q9NS87	1388 aa		11.52	□□□□□ -0.57
PBRM1-208	ENST00000410007	PDE3B	Q13370	1112 aa		11.52	□□□□□ -0.57
PBRM1-208	ENST00000410007	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.52	□□□□□ -0.57
PBRM1-208	ENST00000410007	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.52	□□□□□ -0.57
PBRM1-208	ENST00000410007	NUTM2F	A1L443	756 aa		11.51	□□□□□ -0.57
PBRM1-208	ENST00000410007	ITPRIP	Q8IWB1	547 aa		11.51	□□□□□ -0.57
PBRM1-208	ENST00000410007	STAC3	Q96MF2	364 aa		11.51	□□□□□ -0.57
PBRM1-208	ENST00000410007	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.51	□□□□□ -0.57
PBRM1-208	ENST00000410007	HSCB	Q8IWL3	235 aa		11.51	□□□□□ -0.57
PBRM1-208	ENST00000410007	CFTR	P13569	1480 aa		11.5	□□□□□ -0.57
PBRM1-208	ENST00000410007	CUX1	P39880	1505 aa		11.5	□□□□□ -0.57
PBRM1-208	ENST00000410007	PTMA	P06454	111 aa	Known RBP	11.5	□□□□□ -0.57
PBRM1-208	ENST00000410007	SMC4	Q9NTJ3	1288 aa		11.49	□□□□□ -0.57
PBRM1-208	ENST00000410007	CGNL1	Q0VF96	1302 aa		11.49	□□□□□ -0.57
PBRM1-208	ENST00000410007	FGD6	Q6ZV73	1430 aa		11.49	□□□□□ -0.57
PBRM1-208	ENST00000410007	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.49	□□□□□ -0.57
PBRM1-208	ENST00000410007	PANK3	Q9H999	370 aa		11.49	□□□□□ -0.57
PBRM1-208	ENST00000410007	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.48	□□□□□ -0.57
PBRM1-208	ENST00000410007	KIAA1211	Q6ZU35	1233 aa		11.48	□□□□□ -0.57
PBRM1-208	ENST00000410007	COG3	Q96JB2	828 aa		11.48	□□□□□ -0.57
PBRM1-208	ENST00000410007	APBB1	O00213	710 aa		11.48	□□□□□ -0.57
PBRM1-208	ENST00000410007	HMMR	O75330	724 aa		11.48	□□□□□ -0.57
PBRM1-208	ENST00000410007	TPRN	Q4KMQ1	711 aa		11.47	□□□□□ -0.57
PBRM1-208	ENST00000410007	PMFBP1	Q8TBY8	1022 aa		11.47	□□□□□ -0.57
PBRM1-208	ENST00000410007	LTV1	Q96GA3	475 aa	Predicted RBP	11.47	□□□□□ -0.57
PBRM1-208	ENST00000410007	TAOK2	Q9UL54	1235 aa		11.47	□□□□□ -0.57

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