RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 ARHGAP5Q13017 1502 aa31.54■■■□□ 2.64
TSPAN4-209ENST00000409543 ARHGEF40Q8TER5 1519 aa31.54■■■□□ 2.64
TSPAN4-209ENST00000409543 MAGI2Q86UL8 1455 aa31.52■■■□□ 2.64
TSPAN4-209ENST00000409543 CDC42BPBQ9Y5S2 1711 aa31.48■■■□□ 2.63
TSPAN4-209ENST00000409543 ZFYVE16Q7Z3T8 1539 aa31.48■■■□□ 2.63
TSPAN4-209ENST00000409543 ARID4BQ4LE39 1312 aaPredicted RBP31.47■■■□□ 2.63
TSPAN4-209ENST00000409543 PREX2Q70Z35 1606 aa31.46■■■□□ 2.63
TSPAN4-209ENST00000409543 LOC105371045A0A1W2PR82 267 aa31.46■■■□□ 2.63
TSPAN4-209ENST00000409543 YEATS2Q9ULM3 1422 aa31.45■■■□□ 2.63
TSPAN4-209ENST00000409543 ADAMTSL3P82987 1691 aa31.44■■■□□ 2.62
TSPAN4-209ENST00000409543 BCORL1Q5H9F3 1711 aa31.41■■■□□ 2.62
TSPAN4-209ENST00000409543 ZNF518AQ6AHZ1 1483 aa31.41■■■□□ 2.62
TSPAN4-209ENST00000409543 CDC42BPAQ5VT25 1732 aa31.4■■■□□ 2.62
TSPAN4-209ENST00000409543 AFAP1Q8N556 730 aa31.37■■■□□ 2.61
TSPAN4-209ENST00000409543 MTUS2Q5JR59 1369 aa31.37■■■□□ 2.61
TSPAN4-209ENST00000409543 KDM5CP41229 1560 aa31.35■■■□□ 2.61
TSPAN4-209ENST00000409543 ABCC1P33527 1531 aa31.34■■■□□ 2.61
TSPAN4-209ENST00000409543 GPATCH8Q9UKJ3 1502 aaKnown RBP31.34■■■□□ 2.61
TSPAN4-209ENST00000409543 ATP10AO60312 1499 aa31.33■■■□□ 2.61
TSPAN4-209ENST00000409543 PTPRMP28827 1452 aa31.33■■■□□ 2.61
TSPAN4-209ENST00000409543 ARHGEF12Q9NZN5 1544 aa31.31■■■□□ 2.6
TSPAN4-209ENST00000409543 SIGLEC1Q9BZZ2 1709 aa31.3■■■□□ 2.6
TSPAN4-209ENST00000409543 MADDQ8WXG6 1647 aa31.3■■■□□ 2.6
TSPAN4-209ENST00000409543 C9orf84Q5VXU9 1444 aa31.28■■■□□ 2.6
TSPAN4-209ENST00000409543 TRAPPC8Q9Y2L5 1435 aa31.28■■■□□ 2.6
TSPAN4-209ENST00000409543 ITSN2Q9NZM3 1697 aa31.28■■■□□ 2.6
TSPAN4-209ENST00000409543 CCNB3Q8WWL7 1395 aa31.28■■■□□ 2.6
TSPAN4-209ENST00000409543 ZNF777Q9ULD5 760 aaPredicted RBP31.27■■■□□ 2.6
TSPAN4-209ENST00000409543 EHBP1L1Q8N3D4 1523 aa31.27■■■□□ 2.6
TSPAN4-209ENST00000409543 MLH3Q9UHC1 1453 aa31.27■■■□□ 2.6
TSPAN4-209ENST00000409543 HECW2Q9P2P5 1572 aa31.26■■■□□ 2.6
TSPAN4-209ENST00000409543 CFDP1Q9UEE9 299 aaPredicted RBP31.25■■■□□ 2.59
TSPAN4-209ENST00000409543 MYT1LQ9UL68 1186 aa31.25■■■□□ 2.59
TSPAN4-209ENST00000409543 SAMD9LQ8IVG5 1584 aa31.24■■■□□ 2.59
TSPAN4-209ENST00000409543 VPS8Q8N3P4 1428 aa31.24■■■□□ 2.59
TSPAN4-209ENST00000409543 DIP2CQ9Y2E4 1556 aa31.2■■■□□ 2.58
TSPAN4-209ENST00000409543 RIMS1Q86UR5 1692 aaKnown RBP31.19■■■□□ 2.58
TSPAN4-209ENST00000409543 KIAA1107Q9UPP5 1409 aa31.18■■■□□ 2.58
TSPAN4-209ENST00000409543 MLECQ14165 292 aa31.18■■■□□ 2.58
TSPAN4-209ENST00000409543 PLEKHH2Q8IVE3 1493 aa31.18■■■□□ 2.58
TSPAN4-209ENST00000409543 SYCP2Q9BX26 1530 aa31.17■■■□□ 2.58
TSPAN4-209ENST00000409543 TIAM1Q13009 1591 aa31.17■■■□□ 2.58
TSPAN4-209ENST00000409543 HNRNPMP52272 730 aaKnown RBP eCLIP31.16■■■□□ 2.58
TSPAN4-209ENST00000409543 REREQ9P2R6 1566 aa31.16■■■□□ 2.58
TSPAN4-209ENST00000409543 ABCA6Q8N139 1617 aa31.16■■■□□ 2.58
TSPAN4-209ENST00000409543 KIDINS220Q9ULH0 1771 aa31.12■■■□□ 2.57
TSPAN4-209ENST00000409543 FER1L4A9Z1Z3 1794 aa31.1■■■□□ 2.57
TSPAN4-209ENST00000409543 SUPT6HQ7KZ85 1726 aaKnown RBP31.1■■■□□ 2.57
TSPAN4-209ENST00000409543 SPAG9O60271 1321 aaKnown RBP31.09■■■□□ 2.57
TSPAN4-209ENST00000409543 NCOA2Q15596 1464 aa31.08■■■□□ 2.57
TSPAN4-209ENST00000409543 AGLP35573 1532 aa31.07■■■□□ 2.56
TSPAN4-209ENST00000409543 ZNF644Q9H582 1327 aaPredicted RBP31.06■■■□□ 2.56
TSPAN4-209ENST00000409543 MAP3K1Q13233 1512 aa31.05■■■□□ 2.56
TSPAN4-209ENST00000409543 LRRC9Q6ZRR7 1453 aa31.05■■■□□ 2.56
TSPAN4-209ENST00000409543 ATP7AQ04656 1500 aa31.01■■■□□ 2.55
TSPAN4-209ENST00000409543 MBD5Q9P267 1494 aa31.01■■■□□ 2.55
TSPAN4-209ENST00000409543 PLPPR3Q6T4P5 718 aa31■■■□□ 2.55
TSPAN4-209ENST00000409543 INO80Q9ULG1 1556 aaPredicted RBP31■■■□□ 2.55
TSPAN4-209ENST00000409543 LMTK3Q96Q04 1460 aa30.96■■■□□ 2.55
TSPAN4-209ENST00000409543 KANK4Q5T7N3 995 aaPredicted RBP30.96■■■□□ 2.55
TSPAN4-209ENST00000409543 CAMSAP2Q08AD1 1489 aa30.92■■■□□ 2.54
TSPAN4-209ENST00000409543 RTEL1-TNFRSF6BF6WH68 1400 aa30.9■■■□□ 2.54
TSPAN4-209ENST00000409543 A2MP01023 1474 aa30.9■■■□□ 2.54
TSPAN4-209ENST00000409543 CEBPAP49715 358 aaPredicted RBP30.9■■■□□ 2.54
TSPAN4-209ENST00000409543 RSPH4AQ5TD94 716 aa30.9■■■□□ 2.54
TSPAN4-209ENST00000409543 ESF1Q9H501 851 aaKnown RBP30.89■■■□□ 2.54
TSPAN4-209ENST00000409543 PLXNC1O60486 1568 aa30.88■■■□□ 2.53
TSPAN4-209ENST00000409543 APLP2Q06481 763 aa30.87■■■□□ 2.53
TSPAN4-209ENST00000409543 CCDC141Q6ZP82 1450 aa30.87■■■□□ 2.53
TSPAN4-209ENST00000409543 ADGBQ8N7X0 1667 aa30.85■■■□□ 2.53
TSPAN4-209ENST00000409543 CNTLNQ9NXG0 1405 aa30.83■■■□□ 2.53
TSPAN4-209ENST00000409543 ARHGEF5Q12774 1597 aa30.81■■■□□ 2.52
TSPAN4-209ENST00000409543 C3P01024 1663 aa30.8■■■□□ 2.52
TSPAN4-209ENST00000409543 MYOM3Q5VTT5 1437 aa30.8■■■□□ 2.52
TSPAN4-209ENST00000409543 MIA2Q96PC5 1412 aa30.8■■■□□ 2.52
TSPAN4-209ENST00000409543 HSPA2P54652 639 aa30.79■■■□□ 2.52
TSPAN4-209ENST00000409543 PREX1Q8TCU6 1659 aa30.78■■■□□ 2.52
TSPAN4-209ENST00000409543 SETD1BQ9UPS6 1966 aaKnown RBP30.77■■■□□ 2.52
TSPAN4-209ENST00000409543 DHX29Q7Z478 1369 aaKnown RBP30.77■■■□□ 2.52
TSPAN4-209ENST00000409543 TSPY4P0CV99 314 aa30.76■■■□□ 2.51
TSPAN4-209ENST00000409543 TSPY10P0CW01 314 aa30.76■■■□□ 2.51
TSPAN4-209ENST00000409543 MROH2AA6NES4 1674 aa30.74■■■□□ 2.51
TSPAN4-209ENST00000409543 GGT6Q6P531 493 aa30.73■■■□□ 2.51
TSPAN4-209ENST00000409543 PPP6R1Q9UPN7 881 aa30.72■■■□□ 2.51
TSPAN4-209ENST00000409543 ZMYM3Q14202 1370 aa30.7■■■□□ 2.51
TSPAN4-209ENST00000409543 UHRF1BP1Q6BDS2 1440 aa30.7■■■□□ 2.5
TSPAN4-209ENST00000409543 CLTCQ00610 1675 aaKnown RBP30.66■■■□□ 2.5
TSPAN4-209ENST00000409543 MAST1Q9Y2H9 1570 aa30.66■■■□□ 2.5
TSPAN4-209ENST00000409543 NPATQ14207 1427 aa30.64■■■□□ 2.5
TSPAN4-209ENST00000409543 KIF3BO15066 747 aa30.64■■■□□ 2.5
TSPAN4-209ENST00000409543 PTPN23Q9H3S7 1636 aa30.58■■■□□ 2.49
TSPAN4-209ENST00000409543 FGD6Q6ZV73 1430 aa30.56■■■□□ 2.48
TSPAN4-209ENST00000409543 PTPRKQ15262 1439 aa30.56■■■□□ 2.48
TSPAN4-209ENST00000409543 ILDR1Q86SU0 546 aaPredicted RBP30.55■■■□□ 2.48
TSPAN4-209ENST00000409543 FAM135AQ9P2D6 1515 aa30.54■■■□□ 2.48
TSPAN4-209ENST00000409543 TCOF1Q13428 1488 aaKnown RBP30.53■■■□□ 2.48
TSPAN4-209ENST00000409543 ABCC5O15440 1437 aa30.53■■■□□ 2.48
TSPAN4-209ENST00000409543 SHANK2Q9UPX8 1470 aa30.5■■■□□ 2.47
TSPAN4-209ENST00000409543 KDM5DQ9BY66 1539 aa30.5■■■□□ 2.47
TSPAN4-209ENST00000409543 STRCQ7RTU9 1775 aa30.5■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms