RNA–Protein interactions for RNA: ENST00000409543.6

TSPAN4-209, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TSPAN4, Length 1,031 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-209ENST00000409543 NISCHQ9Y2I1 1504 aa48.39■■■■■ 5.34
TSPAN4-209ENST00000409543 CCDC180Q9P1Z9 1646 aa43.19■■■■■ 4.51
TSPAN4-209ENST00000409543 ABCC9O60706 1549 aa42.69■■■■■ 4.42
TSPAN4-209ENST00000409543 RB1CC1Q8TDY2 1594 aa40.89■■■■■ 4.14
TSPAN4-209ENST00000409543 NACADO15069 1562 aa40.74■■■■■ 4.11
TSPAN4-209ENST00000409543 DCAF8L2P0C7V8 631 aa40.6■■■■■ 4.09
TSPAN4-209ENST00000409543 MYO15BQ96JP2 1530 aa40.37■■■■■ 4.05
TSPAN4-209ENST00000409543 ZCCHC6Q5VYS8 1495 aaKnown RBP40.19■■■■■ 4.03
TSPAN4-209ENST00000409543 DCAF1Q9Y4B6 1507 aa40.03■■■■■ 4
TSPAN4-209ENST00000409543 UNC13AQ9UPW8 1703 aa39.93■■■■□ 3.98
TSPAN4-209ENST00000409543 PABPN1Q86U42 306 aaKnown RBP eCLIP39.84■■■■□ 3.975e-10■■■□□ 17.3
TSPAN4-209ENST00000409543 BICRAQ9NZM4 1560 aa39.66■■■■□ 3.94
TSPAN4-209ENST00000409543 DNAJC5BQ9UF47 199 aa39.62■■■■□ 3.93
TSPAN4-209ENST00000409543 SCRIBQ14160 1630 aa39.36■■■■□ 3.89
TSPAN4-209ENST00000409543 SHROOM4Q9ULL8 1493 aa39.23■■■■□ 3.87
TSPAN4-209ENST00000409543 EIF4G1Q04637 1599 aaKnown RBP38.65■■■■□ 3.78
TSPAN4-209ENST00000409543 CC2D2AQ9P2K1 1620 aa38.6■■■■□ 3.77
TSPAN4-209ENST00000409543 CECR2Q9BXF3 1484 aa38.42■■■■□ 3.74
TSPAN4-209ENST00000409543 SMARCA4P51532 1647 aa37.62■■■■□ 3.61
TSPAN4-209ENST00000409543 NCAPD3P42695 1498 aa37.62■■■■□ 3.61
TSPAN4-209ENST00000409543 ATAD2BQ9ULI0 1458 aa37.55■■■■□ 3.6
TSPAN4-209ENST00000409543 BAZ1AQ9NRL2 1556 aaPredicted RBP37.53■■■■□ 3.6
TSPAN4-209ENST00000409543 SMARCA2P51531 1590 aa37.48■■■■□ 3.59
TSPAN4-209ENST00000409543 HMGXB3Q12766 1538 aa37.36■■■■□ 3.57
TSPAN4-209ENST00000409543 PEG3Q9GZU2 1588 aa37.28■■■■□ 3.56
TSPAN4-209ENST00000409543 MROH2BQ7Z745 1585 aa37.27■■■■□ 3.56
TSPAN4-209ENST00000409543 BAZ1BQ9UIG0 1483 aaKnown RBP37.2■■■■□ 3.55
TSPAN4-209ENST00000409543 WIZO95785 1651 aa36.83■■■■□ 3.49
TSPAN4-209ENST00000409543 ERCC6Q03468 1493 aa36.83■■■■□ 3.49
TSPAN4-209ENST00000409543 NESP48681 1621 aa36.81■■■■□ 3.48
TSPAN4-209ENST00000409543 RSF1Q96T23 1441 aaPredicted RBP36.7■■■■□ 3.47
TSPAN4-209ENST00000409543 LAMC3Q9Y6N6 1575 aa36.67■■■■□ 3.46
TSPAN4-209ENST00000409543 CUX2O14529 1486 aa36.62■■■■□ 3.45
TSPAN4-209ENST00000409543 CADPSQ9ULU8 1353 aa36.49■■■■□ 3.43
TSPAN4-209ENST00000409543 PDS5BQ9NTI5 1447 aa36.46■■■■□ 3.43
TSPAN4-209ENST00000409543 TOP2AP11388 1531 aaKnown RBP36.43■■■■□ 3.42
TSPAN4-209ENST00000409543 THOC2Q8NI27 1593 aaKnown RBP36.34■■■■□ 3.41
TSPAN4-209ENST00000409543 KIF21AQ7Z4S6 1674 aa36.34■■■■□ 3.41
TSPAN4-209ENST00000409543 CFTRP13569 1480 aa36.18■■■■□ 3.38
TSPAN4-209ENST00000409543 MRC2Q9UBG0 1479 aa36.09■■■■□ 3.37
TSPAN4-209ENST00000409543 FANCD2Q9BXW9 1451 aa36.05■■■■□ 3.36
TSPAN4-209ENST00000409543 DNAJC5Q9H3Z4 198 aa36.05■■■■□ 3.36
TSPAN4-209ENST00000409543 CEP164Q9UPV0 1460 aa36.05■■■■□ 3.36
TSPAN4-209ENST00000409543 CCDC88BA6NC98 1476 aa36.02■■■■□ 3.36
TSPAN4-209ENST00000409543 WDR62O43379 1518 aa35.98■■■■□ 3.35
TSPAN4-209ENST00000409543 PRDM2Q13029 1718 aa35.82■■■■□ 3.32
TSPAN4-209ENST00000409543 URB2Q14146 1524 aaKnown RBP35.72■■■■□ 3.31
TSPAN4-209ENST00000409543 ABCC8Q09428 1581 aa35.42■■■■□ 3.26
TSPAN4-209ENST00000409543 TOPBP1Q92547 1522 aa35.42■■■■□ 3.26
TSPAN4-209ENST00000409543 SUPT5HO00267 1087 aaKnown RBP35.42■■■■□ 3.26
TSPAN4-209ENST00000409543 DNMBPQ6XZF7 1577 aa35.34■■■■□ 3.25
TSPAN4-209ENST00000409543 IFT140Q96RY7 1462 aa35.33■■■■□ 3.25
TSPAN4-209ENST00000409543 ZNF608Q9ULD9 1512 aaPredicted RBP35.19■■■■□ 3.22
TSPAN4-209ENST00000409543 POLA1P09884 1462 aaPredicted RBP35.09■■■■□ 3.21
TSPAN4-209ENST00000409543 TARBP1Q13395 1621 aaKnown RBP35.07■■■■□ 3.21
TSPAN4-209ENST00000409543 OSCARQ8IYS5 282 aa35.06■■■■□ 3.2
TSPAN4-209ENST00000409543 EIF4G3O43432 1585 aaKnown RBP35.01■■■■□ 3.2
TSPAN4-209ENST00000409543 CUX1P39880 1505 aa34.99■■■■□ 3.19
TSPAN4-209ENST00000409543 SOGA1O94964 1423 aa34.97■■■■□ 3.19
TSPAN4-209ENST00000409543 AQRO60306 1485 aaKnown RBP eCLIP34.94■■■■□ 3.184e-8■■■■■ 31.9
TSPAN4-209ENST00000409543 FGD5Q6ZNL6 1462 aa34.94■■■■□ 3.18
TSPAN4-209ENST00000409543 RAD54L2Q9Y4B4 1467 aa34.94■■■■□ 3.18
TSPAN4-209ENST00000409543 TDRD9Q8NDG6 1382 aaKnown RBP34.81■■■■□ 3.16
TSPAN4-209ENST00000409543 WDR97A6NE52 1622 aa34.78■■■■□ 3.16
TSPAN4-209ENST00000409543 CHD1O14646 1710 aa34.65■■■■□ 3.14
TSPAN4-209ENST00000409543 TRIM41Q8WV44 630 aa34.62■■■■□ 3.13
TSPAN4-209ENST00000409543 FBLN2P98095 1184 aa34.61■■■■□ 3.13
TSPAN4-209ENST00000409543 WRNQ14191 1432 aaPredicted RBP eCLIP34.61■■■■□ 3.13
TSPAN4-209ENST00000409543 GRIN2BQ13224 1484 aa34.6■■■■□ 3.13
TSPAN4-209ENST00000409543 ABCA10Q8WWZ4 1543 aa34.6■■■■□ 3.13
TSPAN4-209ENST00000409543 SNAPC4Q5SXM2 1469 aa34.59■■■■□ 3.13
TSPAN4-209ENST00000409543 TOP2BQ02880 1626 aa34.57■■■■□ 3.12
TSPAN4-209ENST00000409543 BIVM-ERCC5R4GMW8 1640 aa34.57■■■■□ 3.12
TSPAN4-209ENST00000409543 MAGI1Q96QZ7 1491 aaPredicted RBP34.55■■■■□ 3.12
TSPAN4-209ENST00000409543 GAPVD1Q14C86 1478 aa34.54■■■■□ 3.12
TSPAN4-209ENST00000409543 SYNJ1O43426 1573 aa34.53■■■■□ 3.12
TSPAN4-209ENST00000409543 RIMBP3CA6NJZ7 1639 aa34.49■■■■□ 3.11
TSPAN4-209ENST00000409543 RIMBP3BA6NNM3 1639 aa34.49■■■■□ 3.11
TSPAN4-209ENST00000409543 RIMBP3Q9UFD9 1639 aa34.49■■■■□ 3.11
TSPAN4-209ENST00000409543 ABCA5Q8WWZ7 1642 aa34.48■■■■□ 3.11
TSPAN4-209ENST00000409543 CHMP7Q8WUX9 453 aaPredicted RBP34.46■■■■□ 3.11
TSPAN4-209ENST00000409543 PBRM1Q86U86 1689 aa34.46■■■■□ 3.11
TSPAN4-209ENST00000409543 ARHGEF11O15085 1522 aa34.45■■■■□ 3.1
TSPAN4-209ENST00000409543 SYNJ2O15056 1496 aa34.43■■■■□ 3.1
TSPAN4-209ENST00000409543 CLASP1Q7Z460 1538 aa34.3■■■■□ 3.08
TSPAN4-209ENST00000409543 CYB5RLQ6IPT4 315 aa34.18■■■■□ 3.06
TSPAN4-209ENST00000409543 ADAMTS12P58397 1594 aa34.17■■■■□ 3.06
TSPAN4-209ENST00000409543 ERICH3Q5RHP9 1530 aa34.17■■■■□ 3.06
TSPAN4-209ENST00000409543 GRIN2AQ12879 1464 aa34.14■■■■□ 3.06
TSPAN4-209ENST00000409543 ARAP1Q96P48 1450 aa34.14■■■■□ 3.06
TSPAN4-209ENST00000409543 FHAD1B1AJZ9 1412 aa34.13■■■■□ 3.05
TSPAN4-209ENST00000409543 NUP160Q12769 1436 aa34.02■■■■□ 3.04
TSPAN4-209ENST00000409543 CEP170Q5SW79 1584 aa33.98■■■■□ 3.03
TSPAN4-209ENST00000409543 KIF27Q86VH2 1401 aa33.93■■■■□ 3.02
TSPAN4-209ENST00000409543 IGF1RP08069 1367 aa33.86■■■■□ 3.01
TSPAN4-209ENST00000409543 SHROOM2Q13796 1616 aa33.81■■■■□ 3
TSPAN4-209ENST00000409543 ERCC6L2Q5T890 1561 aa33.77■■■■□ 3
TSPAN4-209ENST00000409543 CUL7Q14999 1698 aa33.76■■■□□ 2.99
TSPAN4-209ENST00000409543 JPH4Q96JJ6 628 aa33.69■■■□□ 2.98
TSPAN4-209ENST00000409543 RUSC2Q8N2Y8 1516 aa33.68■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms