RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 APLP2Q06481 763 aa31.93■■■□□ 2.7
PTCD3-202ENST00000409326 AKNAQ7Z591 1439 aa31.92■■■□□ 2.7
PTCD3-202ENST00000409326 ITSN2Q9NZM3 1697 aa31.89■■■□□ 2.7
PTCD3-202ENST00000409326 GPATCH8Q9UKJ3 1502 aaKnown RBP31.89■■■□□ 2.7
PTCD3-202ENST00000409326 NCOA2Q15596 1464 aa31.88■■■□□ 2.69
PTCD3-202ENST00000409326 KANK4Q5T7N3 995 aaPredicted RBP31.87■■■□□ 2.69
PTCD3-202ENST00000409326 CCNB3Q8WWL7 1395 aa31.86■■■□□ 2.69
PTCD3-202ENST00000409326 EFCAB2Q5VUJ9 269 aa31.86■■■□□ 2.69
PTCD3-202ENST00000409326 ADGRL1O94910 1474 aa31.84■■■□□ 2.69
PTCD3-202ENST00000409326 RICTORQ6R327 1708 aa31.83■■■□□ 2.69
PTCD3-202ENST00000409326 FRMPD1Q5SYB0 1578 aa31.81■■■□□ 2.68
PTCD3-202ENST00000409326 DENND4BO75064 1496 aaPredicted RBP31.79■■■□□ 2.68
PTCD3-202ENST00000409326 SAMD9LQ8IVG5 1584 aa31.77■■■□□ 2.68
PTCD3-202ENST00000409326 ABCC1P33527 1531 aa31.77■■■□□ 2.68
PTCD3-202ENST00000409326 SCAPERQ9BY12 1400 aa31.75■■■□□ 2.67
PTCD3-202ENST00000409326 RAPGEF3O95398 923 aa31.73■■■□□ 2.67
PTCD3-202ENST00000409326 CFDP1Q9UEE9 299 aaPredicted RBP31.73■■■□□ 2.67
PTCD3-202ENST00000409326 POGZQ7Z3K3 1410 aa31.72■■■□□ 2.67
PTCD3-202ENST00000409326 ZMYM4Q5VZL5 1548 aa31.69■■■□□ 2.66
PTCD3-202ENST00000409326 ARHGEF12Q9NZN5 1544 aa31.67■■■□□ 2.66
PTCD3-202ENST00000409326 PLEKHH2Q8IVE3 1493 aa31.66■■■□□ 2.66
PTCD3-202ENST00000409326 ZNF777Q9ULD5 760 aaPredicted RBP31.66■■■□□ 2.66
PTCD3-202ENST00000409326 ZNF518AQ6AHZ1 1483 aa31.65■■■□□ 2.66
PTCD3-202ENST00000409326 SYCP2Q9BX26 1530 aa31.65■■■□□ 2.66
PTCD3-202ENST00000409326 MYOM3Q5VTT5 1437 aa31.65■■■□□ 2.66
PTCD3-202ENST00000409326 KDM5CP41229 1560 aa31.64■■■□□ 2.65
PTCD3-202ENST00000409326 KIAA1107Q9UPP5 1409 aa31.63■■■□□ 2.65
PTCD3-202ENST00000409326 CAMSAP2Q08AD1 1489 aa31.59■■■□□ 2.65
PTCD3-202ENST00000409326 ARHGEF40Q8TER5 1519 aa31.59■■■□□ 2.65
PTCD3-202ENST00000409326 MIA2Q96PC5 1412 aa31.58■■■□□ 2.65
PTCD3-202ENST00000409326 TRAPPC8Q9Y2L5 1435 aa31.58■■■□□ 2.65
PTCD3-202ENST00000409326 MAGI2Q86UL8 1455 aa31.58■■■□□ 2.65
PTCD3-202ENST00000409326 ZNF644Q9H582 1327 aaPredicted RBP31.56■■■□□ 2.64
PTCD3-202ENST00000409326 HECW2Q9P2P5 1572 aa31.56■■■□□ 2.64
PTCD3-202ENST00000409326 ZFYVE16Q7Z3T8 1539 aa31.54■■■□□ 2.64
PTCD3-202ENST00000409326 AFAP1Q8N556 730 aa31.54■■■□□ 2.64
PTCD3-202ENST00000409326 HNRNPMP52272 730 aaKnown RBP eCLIP31.52■■■□□ 2.64
PTCD3-202ENST00000409326 MBD5Q9P267 1494 aa31.52■■■□□ 2.64
PTCD3-202ENST00000409326 PTPN23Q9H3S7 1636 aa31.5■■■□□ 2.63
PTCD3-202ENST00000409326 MLH3Q9UHC1 1453 aa31.5■■■□□ 2.63
PTCD3-202ENST00000409326 FGD6Q6ZV73 1430 aa31.49■■■□□ 2.63
PTCD3-202ENST00000409326 YEATS2Q9ULM3 1422 aa31.49■■■□□ 2.63
PTCD3-202ENST00000409326 ARHGEF5Q12774 1597 aa31.48■■■□□ 2.63
PTCD3-202ENST00000409326 KIDINS220Q9ULH0 1771 aa31.48■■■□□ 2.63
PTCD3-202ENST00000409326 INO80Q9ULG1 1556 aaPredicted RBP31.44■■■□□ 2.62
PTCD3-202ENST00000409326 CCDC141Q6ZP82 1450 aa31.44■■■□□ 2.62
PTCD3-202ENST00000409326 ABCA6Q8N139 1617 aa31.43■■■□□ 2.62
PTCD3-202ENST00000409326 TCOF1Q13428 1488 aaKnown RBP31.43■■■□□ 2.62
PTCD3-202ENST00000409326 DIP2CQ9Y2E4 1556 aa31.43■■■□□ 2.62
PTCD3-202ENST00000409326 PPARGC1BQ86YN6 1023 aaKnown RBP31.42■■■□□ 2.62
PTCD3-202ENST00000409326 ATP7AQ04656 1500 aa31.41■■■□□ 2.62
PTCD3-202ENST00000409326 RSPH4AQ5TD94 716 aa31.39■■■□□ 2.62
PTCD3-202ENST00000409326 SPAG9O60271 1321 aaKnown RBP31.39■■■□□ 2.62
PTCD3-202ENST00000409326 ATP10AO60312 1499 aa31.38■■■□□ 2.61
PTCD3-202ENST00000409326 MYT1LQ9UL68 1186 aa31.37■■■□□ 2.61
PTCD3-202ENST00000409326 SIGLEC1Q9BZZ2 1709 aa31.37■■■□□ 2.61
PTCD3-202ENST00000409326 REREQ9P2R6 1566 aa31.35■■■□□ 2.61
PTCD3-202ENST00000409326 C9orf84Q5VXU9 1444 aa31.35■■■□□ 2.61
PTCD3-202ENST00000409326 CROCC2H7BZ55 1655 aa31.35■■■□□ 2.61
PTCD3-202ENST00000409326 RTEL1-TNFRSF6BF6WH68 1400 aa31.32■■■□□ 2.61
PTCD3-202ENST00000409326 DNMT1P26358 1616 aaKnown RBP31.32■■■□□ 2.6
PTCD3-202ENST00000409326 MAST1Q9Y2H9 1570 aa31.31■■■□□ 2.6
PTCD3-202ENST00000409326 ADGBQ8N7X0 1667 aa31.3■■■□□ 2.6
PTCD3-202ENST00000409326 BCORL1Q5H9F3 1711 aa31.27■■■□□ 2.6
PTCD3-202ENST00000409326 ABCC5O15440 1437 aa31.25■■■□□ 2.59
PTCD3-202ENST00000409326 TSPY4P0CV99 314 aa31.25■■■□□ 2.59
PTCD3-202ENST00000409326 TSPY10P0CW01 314 aa31.25■■■□□ 2.59
PTCD3-202ENST00000409326 SHANK2Q9UPX8 1470 aa31.25■■■□□ 2.59
PTCD3-202ENST00000409326 DAPK1P53355 1430 aa31.24■■■□□ 2.59
PTCD3-202ENST00000409326 PLXNC1O60486 1568 aa31.22■■■□□ 2.59
PTCD3-202ENST00000409326 ARID4BQ4LE39 1312 aaPredicted RBP31.22■■■□□ 2.59
PTCD3-202ENST00000409326 AGLP35573 1532 aa31.21■■■□□ 2.59
PTCD3-202ENST00000409326 FAM50AQ14320 339 aaKnown RBP31.21■■■□□ 2.59
PTCD3-202ENST00000409326 ADAMTSL3P82987 1691 aa31.2■■■□□ 2.59
PTCD3-202ENST00000409326 A2MP01023 1474 aa31.2■■■□□ 2.58
PTCD3-202ENST00000409326 KDM4FA0A1W2PPD8 638 aa31.19■■■□□ 2.58
PTCD3-202ENST00000409326 RRBP1Q9P2E9 1410 aaKnown RBP31.17■■■□□ 2.58
PTCD3-202ENST00000409326 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.17■■■□□ 2.58
PTCD3-202ENST00000409326 MADDQ8WXG6 1647 aa31.11■■■□□ 2.57
PTCD3-202ENST00000409326 FER1L4A9Z1Z3 1794 aa31.1■■■□□ 2.57
PTCD3-202ENST00000409326 DHX29Q7Z478 1369 aaKnown RBP31.09■■■□□ 2.57
PTCD3-202ENST00000409326 ADGRL2O95490 1459 aa31.07■■■□□ 2.56
PTCD3-202ENST00000409326 DUOX2Q9NRD8 1548 aa31.05■■■□□ 2.56
PTCD3-202ENST00000409326 MLECQ14165 292 aa31.05■■■□□ 2.56
PTCD3-202ENST00000409326 RIMS1Q86UR5 1692 aaKnown RBP31.04■■■□□ 2.56
PTCD3-202ENST00000409326 EIF2AK4Q9P2K8 1649 aaKnown RBP31.03■■■□□ 2.56
PTCD3-202ENST00000409326 ANKRD30AQ9BXX3 1397 aa31.03■■■□□ 2.56
PTCD3-202ENST00000409326 KIF15Q9NS87 1388 aa31.03■■■□□ 2.56
PTCD3-202ENST00000409326 PTPRKQ15262 1439 aa31.02■■■□□ 2.56
PTCD3-202ENST00000409326 NCOA1Q15788 1441 aa31.01■■■□□ 2.55
PTCD3-202ENST00000409326 CHIC2Q9UKJ5 165 aa31.01■■■□□ 2.55
PTCD3-202ENST00000409326 RRP7BPQ9NSQ0 103 aa30.96■■■□□ 2.55
PTCD3-202ENST00000409326 ERBINQ96RT1 1412 aa30.96■■■□□ 2.55
PTCD3-202ENST00000409326 RNF17Q9BXT8 1623 aaKnown RBP30.95■■■□□ 2.55
PTCD3-202ENST00000409326 PTPRMP28827 1452 aa30.95■■■□□ 2.54
PTCD3-202ENST00000409326 ROCK1Q13464 1354 aa30.93■■■□□ 2.54
PTCD3-202ENST00000409326 KIF3BO15066 747 aa30.92■■■□□ 2.54
PTCD3-202ENST00000409326 ITGAEP38570 1179 aa30.92■■■□□ 2.54
PTCD3-202ENST00000409326 AEBP2Q6ZN18 517 aaPredicted RBP30.91■■■□□ 2.54
PTCD3-202ENST00000409326 MROH2AA6NES4 1674 aa30.89■■■□□ 2.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms