RNA–Protein interactions for RNA: ENST00000400214.2

HMGB3P7-201, Transcript of high mobility group box 3 pseudogene 7, humanhuman

BASIC

Gene HMGB3P7, Length 611 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P7-201ENST00000400214 FAM163AQ96GL9 167 aaPredicted RBP8.82□□□□□ -1
HMGB3P7-201ENST00000400214 SPOCK2Q92563 424 aa8.81□□□□□ -1
HMGB3P7-201ENST00000400214 ABCC8Q09428 1581 aa8.81□□□□□ -1
HMGB3P7-201ENST00000400214 DNMBPQ6XZF7 1577 aa8.79□□□□□ -1
HMGB3P7-201ENST00000400214 TOPBP1Q92547 1522 aa8.79□□□□□ -1
HMGB3P7-201ENST00000400214 POTEFA5A3E0 1075 aa8.77□□□□□ -1.01
HMGB3P7-201ENST00000400214 ATN1P54259 1190 aaPredicted RBP8.77□□□□□ -1.01
HMGB3P7-201ENST00000400214 MYT1Q01538 1121 aa8.76□□□□□ -1.01
HMGB3P7-201ENST00000400214 IFT140Q96RY7 1462 aa8.73□□□□□ -1.01
HMGB3P7-201ENST00000400214 CDAN1Q8IWY9 1227 aa8.73□□□□□ -1.01
HMGB3P7-201ENST00000400214 TARBP1Q13395 1621 aaKnown RBP8.72□□□□□ -1.01
HMGB3P7-201ENST00000400214 CUX1P39880 1505 aa8.71□□□□□ -1.01
HMGB3P7-201ENST00000400214 POLA1P09884 1462 aaPredicted RBP8.7□□□□□ -1.02
HMGB3P7-201ENST00000400214 BMP2KQ9NSY1 1161 aaPredicted RBP8.7□□□□□ -1.02
HMGB3P7-201ENST00000400214 CCDC61Q9Y6R9 512 aa8.7□□□□□ -1.02
HMGB3P7-201ENST00000400214 ARID3AQ99856 593 aa8.69□□□□□ -1.02
HMGB3P7-201ENST00000400214 WDR97A6NE52 1622 aa8.69□□□□□ -1.02
HMGB3P7-201ENST00000400214 BIVM-ERCC5R4GMW8 1640 aa8.69□□□□□ -1.02
HMGB3P7-201ENST00000400214 LOC105371045A0A1W2PR82 267 aa8.68□□□□□ -1.02
HMGB3P7-201ENST00000400214 NEUROD2Q15784 382 aa8.68□□□□□ -1.02
HMGB3P7-201ENST00000400214 LMOD2Q6P5Q4 547 aa8.68□□□□□ -1.02
HMGB3P7-201ENST00000400214 CCDC9Q9Y3X0 531 aaKnown RBP8.68□□□□□ -1.02
HMGB3P7-201ENST00000400214 TOP2BQ02880 1626 aa8.68□□□□□ -1.02
HMGB3P7-201ENST00000400214 FGD5Q6ZNL6 1462 aa8.67□□□□□ -1.02
HMGB3P7-201ENST00000400214 ZMYND15Q9H091 742 aa8.67□□□□□ -1.02
HMGB3P7-201ENST00000400214 EIF4G3O43432 1585 aaKnown RBP8.66□□□□□ -1.02
HMGB3P7-201ENST00000400214 ZNF608Q9ULD9 1512 aaPredicted RBP8.66□□□□□ -1.02
HMGB3P7-201ENST00000400214 KIF12Q96FN5 646 aa8.66□□□□□ -1.02
HMGB3P7-201ENST00000400214 SOGA1O94964 1423 aa8.65□□□□□ -1.02
HMGB3P7-201ENST00000400214 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.65□□□□□ -1.02
HMGB3P7-201ENST00000400214 RSPH6AQ9H0K4 717 aa8.65□□□□□ -1.02
HMGB3P7-201ENST00000400214 TRPC6Q9Y210 931 aa8.65□□□□□ -1.02
HMGB3P7-201ENST00000400214 WRNQ14191 1432 aaPredicted RBP eCLIP8.64□□□□□ -1.03
HMGB3P7-201ENST00000400214 TIE1P35590 1138 aa8.64□□□□□ -1.03
HMGB3P7-201ENST00000400214 HS6ST3Q8IZP7 471 aa8.64□□□□□ -1.03
HMGB3P7-201ENST00000400214 SYNJ1O43426 1573 aa8.64□□□□□ -1.03
HMGB3P7-201ENST00000400214 RAD54L2Q9Y4B4 1467 aa8.64□□□□□ -1.03
HMGB3P7-201ENST00000400214 TSPYL2Q9H2G4 693 aaPredicted RBP8.63□□□□□ -1.03
HMGB3P7-201ENST00000400214 COLQQ9Y215 455 aaPredicted RBP8.62□□□□□ -1.03
HMGB3P7-201ENST00000400214 ABCA10Q8WWZ4 1543 aa8.62□□□□□ -1.03
HMGB3P7-201ENST00000400214 ZBTB7CA1YPR0 619 aa8.61□□□□□ -1.03
HMGB3P7-201ENST00000400214 AQRO60306 1485 aaKnown RBP eCLIP8.61□□□□□ -1.03
HMGB3P7-201ENST00000400214 C1orf115Q9H7X2 142 aa8.6□□□□□ -1.03
HMGB3P7-201ENST00000400214 ABCA5Q8WWZ7 1642 aa8.6□□□□□ -1.03
HMGB3P7-201ENST00000400214 PBRM1Q86U86 1689 aa8.59□□□□□ -1.03
HMGB3P7-201ENST00000400214 NKX1-1Q15270 411 aaPredicted RBP8.59□□□□□ -1.03
HMGB3P7-201ENST00000400214 CHD1O14646 1710 aa8.58□□□□□ -1.04
HMGB3P7-201ENST00000400214 ST18O60284 1047 aa8.58□□□□□ -1.04
HMGB3P7-201ENST00000400214 MMRN1Q13201 1228 aa8.58□□□□□ -1.04
HMGB3P7-201ENST00000400214 TDRD9Q8NDG6 1382 aaKnown RBP8.58□□□□□ -1.04
HMGB3P7-201ENST00000400214 TTLL13PA6NNM8 815 aa8.57□□□□□ -1.04
HMGB3P7-201ENST00000400214 GRIN2BQ13224 1484 aa8.57□□□□□ -1.04
HMGB3P7-201ENST00000400214 MAP3K13O43283 966 aa8.56□□□□□ -1.04
HMGB3P7-201ENST00000400214 GTPBP6O43824 516 aaPredicted RBP8.56□□□□□ -1.04
HMGB3P7-201ENST00000400214 NECTIN2Q92692 538 aa8.56□□□□□ -1.04
HMGB3P7-201ENST00000400214 GAPVD1Q14C86 1478 aa8.56□□□□□ -1.04
HMGB3P7-201ENST00000400214 MAGI1Q96QZ7 1491 aaPredicted RBP8.56□□□□□ -1.04
HMGB3P7-201ENST00000400214 EIF5BO60841 1220 aaKnown RBP8.55□□□□□ -1.04
HMGB3P7-201ENST00000400214 SEC24BO95487 1268 aa8.55□□□□□ -1.04
HMGB3P7-201ENST00000400214 IER5LQ5T953 404 aa8.55□□□□□ -1.04
HMGB3P7-201ENST00000400214 SLC24A3Q9HC58 644 aa8.55□□□□□ -1.04
HMGB3P7-201ENST00000400214 PDIA4P13667 645 aaKnown RBP8.54□□□□□ -1.04
HMGB3P7-201ENST00000400214 SPNS2Q8IVW8 549 aa8.54□□□□□ -1.04
HMGB3P7-201ENST00000400214 SNAPC4Q5SXM2 1469 aa8.53□□□□□ -1.04
HMGB3P7-201ENST00000400214 ERICH3Q5RHP9 1530 aa8.53□□□□□ -1.04
HMGB3P7-201ENST00000400214 P3H3Q8IVL6 736 aa8.52□□□□□ -1.05
HMGB3P7-201ENST00000400214 SLAIN1Q8ND83 568 aa8.52□□□□□ -1.05
HMGB3P7-201ENST00000400214 ZC3H15Q8WU90 426 aaKnown RBP8.52□□□□□ -1.05
HMGB3P7-201ENST00000400214 CIZ1Q9ULV3 898 aaPredicted RBP8.52□□□□□ -1.05
HMGB3P7-201ENST00000400214 SYNJ2O15056 1496 aa8.51□□□□□ -1.05
HMGB3P7-201ENST00000400214 TRIM35Q9UPQ4 493 aa8.51□□□□□ -1.05
HMGB3P7-201ENST00000400214 ADAMTS12P58397 1594 aa8.49□□□□□ -1.05
HMGB3P7-201ENST00000400214 IGSF3O75054 1194 aa8.49□□□□□ -1.05
HMGB3P7-201ENST00000400214 ARID3CA6NKF2 412 aa8.48□□□□□ -1.05
HMGB3P7-201ENST00000400214 TMEM121BQ9BXQ6 578 aaPredicted RBP8.48□□□□□ -1.05
HMGB3P7-201ENST00000400214 CLASP1Q7Z460 1538 aa8.48□□□□□ -1.05
HMGB3P7-201ENST00000400214 RASEFQ8IZ41 740 aa8.47□□□□□ -1.05
HMGB3P7-201ENST00000400214 KCNV2Q8TDN2 545 aa8.47□□□□□ -1.05
HMGB3P7-201ENST00000400214 FHAD1B1AJZ9 1412 aa8.46□□□□□ -1.05
HMGB3P7-201ENST00000400214 CHMP7Q8WUX9 453 aaPredicted RBP8.46□□□□□ -1.06
HMGB3P7-201ENST00000400214 SGIP1Q9BQI5 828 aa8.46□□□□□ -1.06
HMGB3P7-201ENST00000400214 CUL7Q14999 1698 aa8.46□□□□□ -1.06
HMGB3P7-201ENST00000400214 KIF27Q86VH2 1401 aa8.46□□□□□ -1.06
HMGB3P7-201ENST00000400214 GRIN2AQ12879 1464 aa8.45□□□□□ -1.06
HMGB3P7-201ENST00000400214 RIMBP3CA6NJZ7 1639 aa8.45□□□□□ -1.06
HMGB3P7-201ENST00000400214 RIMBP3BA6NNM3 1639 aa8.45□□□□□ -1.06
HMGB3P7-201ENST00000400214 RIMBP3Q9UFD9 1639 aa8.45□□□□□ -1.06
HMGB3P7-201ENST00000400214 PLCD3Q8N3E9 789 aa8.45□□□□□ -1.06
HMGB3P7-201ENST00000400214 IGF1RP08069 1367 aa8.44□□□□□ -1.06
HMGB3P7-201ENST00000400214 ARHGEF11O15085 1522 aa8.44□□□□□ -1.06
HMGB3P7-201ENST00000400214 RNF25Q96BH1 459 aaPredicted RBP8.43□□□□□ -1.06
HMGB3P7-201ENST00000400214 NUP160Q12769 1436 aa8.43□□□□□ -1.06
HMGB3P7-201ENST00000400214 CEP170Q5SW79 1584 aa8.43□□□□□ -1.06
HMGB3P7-201ENST00000400214 APBB1O00213 710 aa8.42□□□□□ -1.06
HMGB3P7-201ENST00000400214 SHROOM2Q13796 1616 aa8.41□□□□□ -1.06
HMGB3P7-201ENST00000400214 IRX5P78411 483 aaPredicted RBP8.4□□□□□ -1.06
HMGB3P7-201ENST00000400214 KCTD17Q8N5Z5 321 aa8.4□□□□□ -1.06
HMGB3P7-201ENST00000400214 PCDHB13Q9Y5F0 798 aa8.39□□□□□ -1.07
HMGB3P7-201ENST00000400214 PLCG2P16885 1265 aa8.38□□□□□ -1.07
HMGB3P7-201ENST00000400214 TRIM41Q8WV44 630 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms