RNA–Protein interactions for RNA: ENST00000397901.7

CHMP1A-201, Transcript of charged multivesicular body protein 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP1A, Length 2,483 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-201ENST00000397901 DEKP35659 375 aaKnown RBP22.13■■□□□ 1.13
CHMP1A-201ENST00000397901 HNRNPUQ00839 825 aaKnown RBP eCLIP22.13■■□□□ 1.13
CHMP1A-201ENST00000397901 CHMP7Q8WUX9 453 aaPredicted RBP22.12■■□□□ 1.13
CHMP1A-201ENST00000397901 RAPGEF6Q8TEU7 1601 aa22.11■■□□□ 1.13
CHMP1A-201ENST00000397901 NUP153P49790 1475 aaKnown RBP22.1■■□□□ 1.13
CHMP1A-201ENST00000397901 NUP160Q12769 1436 aa22.1■■□□□ 1.13
CHMP1A-201ENST00000397901 HSPA5P11021 654 aaKnown RBP22.09■■□□□ 1.13
CHMP1A-201ENST00000397901 WASHC2AQ641Q2 1341 aa22.08■■□□□ 1.13
CHMP1A-201ENST00000397901 CDK11AQ9UQ88 783 aaPredicted RBP22.07■■□□□ 1.12
CHMP1A-201ENST00000397901 IRX6P78412 446 aaPredicted RBP22.07■■□□□ 1.12
CHMP1A-201ENST00000397901 MIA2Q96PC5 1412 aa22.06■■□□□ 1.12
CHMP1A-201ENST00000397901 ARID3CA6NKF2 412 aa22.04■■□□□ 1.12
CHMP1A-201ENST00000397901 FBLN2P98095 1184 aa22.02■■□□□ 1.12
CHMP1A-201ENST00000397901 DENND4BO75064 1496 aaPredicted RBP22.02■■□□□ 1.12
CHMP1A-201ENST00000397901 EIF4G2P78344 907 aaKnown RBP eCLIP22■■□□□ 1.11
CHMP1A-201ENST00000397901 KDM6BO15054 1643 aa22■■□□□ 1.11
CHMP1A-201ENST00000397901 GCC2Q8IWJ2 1684 aa21.99■■□□□ 1.11
CHMP1A-201ENST00000397901 FOXD1Q16676 465 aa21.99■■□□□ 1.11
CHMP1A-201ENST00000397901 ANO8Q9HCE9 1232 aaPredicted RBP21.98■■□□□ 1.11
CHMP1A-201ENST00000397901 ERICH6BQ5W0A0 696 aa21.98■■□□□ 1.11
CHMP1A-201ENST00000397901 JPH4Q96JJ6 628 aa21.98■■□□□ 1.11
CHMP1A-201ENST00000397901 CARMIL2Q6F5E8 1435 aa21.97■■□□□ 1.11
CHMP1A-201ENST00000397901 AKNAQ7Z591 1439 aa21.97■■□□□ 1.11
CHMP1A-201ENST00000397901 PLB1Q6P1J6 1458 aa21.96■■□□□ 1.11
CHMP1A-201ENST00000397901 CCDC184Q52MB2 194 aa21.96■■□□□ 1.11
CHMP1A-201ENST00000397901 MPHOSPH9Q99550 1183 aa21.96■■□□□ 1.11
CHMP1A-201ENST00000397901 L3MBTL2Q969R5 705 aa21.95■■□□□ 1.1
CHMP1A-201ENST00000397901 CNTLNQ9NXG0 1405 aa21.93■■□□□ 1.1
CHMP1A-201ENST00000397901 C11orf95C9JLR9 678 aaPredicted RBP21.92■■□□□ 1.1
CHMP1A-201ENST00000397901 TROQ12816 1431 aaPredicted RBP21.91■■□□□ 1.1
CHMP1A-201ENST00000397901 PRG4Q92954 1404 aaPredicted RBP21.89■■□□□ 1.1
CHMP1A-201ENST00000397901 FAM9BQ8IZU0 186 aa21.88■■□□□ 1.09
CHMP1A-201ENST00000397901 ADCY10Q96PN6 1610 aa21.88■■□□□ 1.09
CHMP1A-201ENST00000397901 DNMT1P26358 1616 aaKnown RBP21.88■■□□□ 1.09
CHMP1A-201ENST00000397901 ABCA8O94911 1581 aa21.87■■□□□ 1.09
CHMP1A-201ENST00000397901 CCDC7Q96M83 1385 aa21.87■■□□□ 1.09
CHMP1A-201ENST00000397901 DAPK1P53355 1430 aa21.87■■□□□ 1.09
CHMP1A-201ENST00000397901 PRKRIP1Q9H875 184 aaPredicted RBP21.86■■□□□ 1.09
CHMP1A-201ENST00000397901 ABCC5O15440 1437 aa21.84■■□□□ 1.09
CHMP1A-201ENST00000397901 NCOA1Q15788 1441 aa21.84■■□□□ 1.09
CHMP1A-201ENST00000397901 MRS2Q9HD23 443 aa21.84■■□□□ 1.09
CHMP1A-201ENST00000397901 KIF14Q15058 1648 aa21.84■■□□□ 1.09
CHMP1A-201ENST00000397901 NBPF8Q3BBV2 869 aa21.84■■□□□ 1.09
CHMP1A-201ENST00000397901 ROCK1Q13464 1354 aa21.84■■□□□ 1.09
CHMP1A-201ENST00000397901 ITSN2Q9NZM3 1697 aa21.83■■□□□ 1.09
CHMP1A-201ENST00000397901 ZNF644Q9H582 1327 aaPredicted RBP21.82■■□□□ 1.08
CHMP1A-201ENST00000397901 CHD1O14646 1710 aa21.8■■□□□ 1.08
CHMP1A-201ENST00000397901 GPATCH8Q9UKJ3 1502 aaKnown RBP21.8■■□□□ 1.08
CHMP1A-201ENST00000397901 ANKRD30BQ9BXX2 1392 aa21.79■■□□□ 1.08
CHMP1A-201ENST00000397901 PPP4R2Q9NY27 417 aa21.79■■□□□ 1.08
CHMP1A-201ENST00000397901 NOP58Q9Y2X3 529 aaKnown RBP21.79■■□□□ 1.08
CHMP1A-201ENST00000397901 SALL2Q9Y467 1007 aaPredicted RBP21.78■■□□□ 1.08
CHMP1A-201ENST00000397901 CAMSAP2Q08AD1 1489 aa21.78■■□□□ 1.08
CHMP1A-201ENST00000397901 RPRD2Q5VT52 1461 aaKnown RBP21.78■■□□□ 1.08
CHMP1A-201ENST00000397901 ATP10BO94823 1461 aa21.77■■□□□ 1.08
CHMP1A-201ENST00000397901 SLC4A1APQ9BWU0 796 aaKnown RBP21.77■■□□□ 1.07
CHMP1A-201ENST00000397901 KIF7Q2M1P5 1343 aa21.76■■□□□ 1.07
CHMP1A-201ENST00000397901 TEX14Q8IWB6 1497 aa21.75■■□□□ 1.07
CHMP1A-201ENST00000397901 ZBED9Q6R2W3 1325 aa21.74■■□□□ 1.07
CHMP1A-201ENST00000397901 CFDP1Q9UEE9 299 aaPredicted RBP21.74■■□□□ 1.07
CHMP1A-201ENST00000397901 CNGB1Q14028 1251 aaPredicted RBP21.73■■□□□ 1.07
CHMP1A-201ENST00000397901 B4GALNT3Q6L9W6 998 aa21.73■■□□□ 1.07
CHMP1A-201ENST00000397901 NBR1Q14596 966 aa21.72■■□□□ 1.07
CHMP1A-201ENST00000397901 ABCC10Q5T3U5 1492 aa21.72■■□□□ 1.07
CHMP1A-201ENST00000397901 CDC42BPAQ5VT25 1732 aa21.71■■□□□ 1.07
CHMP1A-201ENST00000397901 SHROOM2Q13796 1616 aa21.71■■□□□ 1.07
CHMP1A-201ENST00000397901 PTPRGP23470 1445 aa21.71■■□□□ 1.07
CHMP1A-201ENST00000397901 CROCC2H7BZ55 1655 aa21.7■■□□□ 1.07
CHMP1A-201ENST00000397901 ADGBQ8N7X0 1667 aa21.7■■□□□ 1.06
CHMP1A-201ENST00000397901 PLEKHD1A6NEE1 506 aa21.7■■□□□ 1.06
CHMP1A-201ENST00000397901 SPATA31E1Q6ZUB1 1445 aa21.7■■□□□ 1.06
CHMP1A-201ENST00000397901 POLR3GLQ9BT43 218 aa21.67■■□□□ 1.06
CHMP1A-201ENST00000397901 ADGRL2O95490 1459 aa21.67■■□□□ 1.06
CHMP1A-201ENST00000397901 ZNF326Q5BKZ1 582 aaKnown RBP21.65■■□□□ 1.06
CHMP1A-201ENST00000397901 RTL5Q5HYW3 569 aaPredicted RBP21.63■■□□□ 1.05
CHMP1A-201ENST00000397901 ZNF777Q9ULD5 760 aaPredicted RBP21.63■■□□□ 1.05
CHMP1A-201ENST00000397901 PAK3O75914 559 aaPredicted RBP21.62■■□□□ 1.05
CHMP1A-201ENST00000397901 UBE2Q2Q8WVN8 375 aa21.62■■□□□ 1.05
CHMP1A-201ENST00000397901 POLR1AO95602 1720 aaPredicted RBP21.6■■□□□ 1.05
CHMP1A-201ENST00000397901 PZPP20742 1482 aa21.6■■□□□ 1.05
CHMP1A-201ENST00000397901 SENP3-EIF4A1A0A087X0R7 540 aa21.58■■□□□ 1.05
CHMP1A-201ENST00000397901 SHANK2Q9UPX8 1470 aa21.57■■□□□ 1.04
CHMP1A-201ENST00000397901 ERCC6L2Q5T890 1561 aa21.57■■□□□ 1.04
CHMP1A-201ENST00000397901 DHX29Q7Z478 1369 aaKnown RBP21.57■■□□□ 1.04
CHMP1A-201ENST00000397901 USP47Q96K76 1375 aa21.57■■□□□ 1.04
CHMP1A-201ENST00000397901 CCDC136Q96JN2 1154 aa21.56■■□□□ 1.04
CHMP1A-201ENST00000397901 ANKRD30AQ9BXX3 1397 aa21.56■■□□□ 1.04
CHMP1A-201ENST00000397901 IL27Q8NEV9 243 aa21.54■■□□□ 1.04
CHMP1A-201ENST00000397901 PKD2Q13563 968 aa21.53■■□□□ 1.04
CHMP1A-201ENST00000397901 BCORL1Q5H9F3 1711 aa21.53■■□□□ 1.04
CHMP1A-201ENST00000397901 CDC42BPBQ9Y5S2 1711 aa21.53■■□□□ 1.04
CHMP1A-201ENST00000397901 MBD5Q9P267 1494 aa21.53■■□□□ 1.04
CHMP1A-201ENST00000397901 PREX2Q70Z35 1606 aa21.52■■□□□ 1.04
CHMP1A-201ENST00000397901 ARHGEF5Q12774 1597 aa21.52■■□□□ 1.04
CHMP1A-201ENST00000397901 C9orf84Q5VXU9 1444 aa21.52■■□□□ 1.04
CHMP1A-201ENST00000397901 SMG6Q86US8 1419 aaKnown RBP21.52■■□□□ 1.04
CHMP1A-201ENST00000397901 CLASP1Q7Z460 1538 aa21.52■■□□□ 1.04
CHMP1A-201ENST00000397901 KIAA1107Q9UPP5 1409 aa21.52■■□□□ 1.03
CHMP1A-201ENST00000397901 ABCC2Q92887 1545 aa21.51■■□□□ 1.03
CHMP1A-201ENST00000397901 IPO9Q96P70 1041 aaKnown RBP21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms