RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 DAPK1P53355 1430 aa28.67■■■□□ 2.18
CLK3-202ENST00000395066 NBPF8Q3BBV2 869 aa28.67■■■□□ 2.18
CLK3-202ENST00000395066 RBM19Q9Y4C8 960 aaKnown RBP28.65■■■□□ 2.18
CLK3-202ENST00000395066 ABCC5O15440 1437 aa28.63■■■□□ 2.17
CLK3-202ENST00000395066 DISP1Q96F81 1524 aa28.63■■■□□ 2.17
CLK3-202ENST00000395066 NUP153P49790 1475 aaKnown RBP28.61■■■□□ 2.17
CLK3-202ENST00000395066 SLC4A1APQ9BWU0 796 aaKnown RBP28.6■■■□□ 2.17
CLK3-202ENST00000395066 ANKRD30BQ9BXX2 1392 aa28.6■■■□□ 2.17
CLK3-202ENST00000395066 KIAA0556O60303 1618 aa28.59■■■□□ 2.17
CLK3-202ENST00000395066 CNTLNQ9NXG0 1405 aa28.59■■■□□ 2.17
CLK3-202ENST00000395066 CCDC7Q96M83 1385 aa28.55■■■□□ 2.16
CLK3-202ENST00000395066 DNMT1P26358 1616 aaKnown RBP28.55■■■□□ 2.16
CLK3-202ENST00000395066 RPRD2Q5VT52 1461 aaKnown RBP28.55■■■□□ 2.16
CLK3-202ENST00000395066 KIAA0586Q9BVV6 1533 aa28.54■■■□□ 2.16
CLK3-202ENST00000395066 FAM9BQ8IZU0 186 aa28.54■■■□□ 2.16
CLK3-202ENST00000395066 PRG4Q92954 1404 aaPredicted RBP28.54■■■□□ 2.16
CLK3-202ENST00000395066 ZNF777Q9ULD5 760 aaPredicted RBP28.53■■■□□ 2.16
CLK3-202ENST00000395066 ROCK1Q13464 1354 aa28.53■■■□□ 2.16
CLK3-202ENST00000395066 NCOA1Q15788 1441 aa28.53■■■□□ 2.16
CLK3-202ENST00000395066 CNGB1Q14028 1251 aaPredicted RBP28.53■■■□□ 2.16
CLK3-202ENST00000395066 TEX14Q8IWB6 1497 aa28.52■■■□□ 2.16
CLK3-202ENST00000395066 RAPGEF6Q8TEU7 1601 aa28.51■■■□□ 2.15
CLK3-202ENST00000395066 IFT140Q96RY7 1462 aa28.51■■■□□ 2.15
CLK3-202ENST00000395066 PRKRIP1Q9H875 184 aaPredicted RBP28.51■■■□□ 2.15
CLK3-202ENST00000395066 GRIN2AQ12879 1464 aa28.47■■■□□ 2.15
CLK3-202ENST00000395066 CFDP1Q9UEE9 299 aaPredicted RBP28.47■■■□□ 2.15
CLK3-202ENST00000395066 KIF7Q2M1P5 1343 aa28.46■■■□□ 2.15
CLK3-202ENST00000395066 MRS2Q9HD23 443 aa28.46■■■□□ 2.15
CLK3-202ENST00000395066 CDK11AQ9UQ88 783 aaPredicted RBP28.46■■■□□ 2.15
CLK3-202ENST00000395066 FBLN2P98095 1184 aa28.46■■■□□ 2.15
CLK3-202ENST00000395066 ZNF326Q5BKZ1 582 aaKnown RBP28.46■■■□□ 2.15
CLK3-202ENST00000395066 PLB1Q6P1J6 1458 aa28.45■■■□□ 2.15
CLK3-202ENST00000395066 EIF4G3O43432 1585 aaKnown RBP28.43■■■□□ 2.14
CLK3-202ENST00000395066 CAMSAP2Q08AD1 1489 aa28.42■■■□□ 2.14
CLK3-202ENST00000395066 PZPP20742 1482 aa28.42■■■□□ 2.14
CLK3-202ENST00000395066 POLR3GLQ9BT43 218 aa28.41■■■□□ 2.14
CLK3-202ENST00000395066 SPATA31E1Q6ZUB1 1445 aa28.39■■■□□ 2.14
CLK3-202ENST00000395066 KIF14Q15058 1648 aa28.39■■■□□ 2.14
CLK3-202ENST00000395066 TROQ12816 1431 aaPredicted RBP28.38■■■□□ 2.13
CLK3-202ENST00000395066 CHMP7Q8WUX9 453 aaPredicted RBP28.38■■■□□ 2.13
CLK3-202ENST00000395066 GPATCH8Q9UKJ3 1502 aaKnown RBP28.35■■■□□ 2.13
CLK3-202ENST00000395066 PKD2Q13563 968 aa28.33■■■□□ 2.13
CLK3-202ENST00000395066 SENP3-EIF4A1A0A087X0R7 540 aa28.32■■■□□ 2.12
CLK3-202ENST00000395066 CEP170Q5SW79 1584 aa28.32■■■□□ 2.12
CLK3-202ENST00000395066 BCL11AQ9H165 835 aa28.32■■■□□ 2.12
CLK3-202ENST00000395066 MSH5O43196 834 aa28.28■■■□□ 2.12
CLK3-202ENST00000395066 KIAA1107Q9UPP5 1409 aa28.26■■■□□ 2.11
CLK3-202ENST00000395066 USP47Q96K76 1375 aa28.24■■■□□ 2.11
CLK3-202ENST00000395066 ITSN2Q9NZM3 1697 aa28.24■■■□□ 2.11
CLK3-202ENST00000395066 ADGBQ8N7X0 1667 aa28.24■■■□□ 2.11
CLK3-202ENST00000395066 JPH4Q96JJ6 628 aa28.24■■■□□ 2.11
CLK3-202ENST00000395066 ZBED9Q6R2W3 1325 aa28.23■■■□□ 2.11
CLK3-202ENST00000395066 FANCIQ9NVI1 1328 aa28.23■■■□□ 2.11
CLK3-202ENST00000395066 BCORL1Q5H9F3 1711 aa28.23■■■□□ 2.11
CLK3-202ENST00000395066 ERCC6Q03468 1493 aa28.22■■■□□ 2.11
CLK3-202ENST00000395066 MBD5Q9P267 1494 aa28.22■■■□□ 2.11
CLK3-202ENST00000395066 POLR1AO95602 1720 aaPredicted RBP28.22■■■□□ 2.11
CLK3-202ENST00000395066 ANKRD30AQ9BXX3 1397 aa28.2■■■□□ 2.11
CLK3-202ENST00000395066 B4GALNT3Q6L9W6 998 aa28.2■■■□□ 2.1
CLK3-202ENST00000395066 ANKRD50Q9ULJ7 1429 aa28.2■■■□□ 2.1
CLK3-202ENST00000395066 DHX29Q7Z478 1369 aaKnown RBP28.19■■■□□ 2.1
CLK3-202ENST00000395066 SYNJ2O15056 1496 aa28.19■■■□□ 2.1
CLK3-202ENST00000395066 CROCC2H7BZ55 1655 aa28.19■■■□□ 2.1
CLK3-202ENST00000395066 ERICH6BQ5W0A0 696 aa28.18■■■□□ 2.1
CLK3-202ENST00000395066 MAGI1Q96QZ7 1491 aaPredicted RBP28.18■■■□□ 2.1
CLK3-202ENST00000395066 ADGRL2O95490 1459 aa28.18■■■□□ 2.1
CLK3-202ENST00000395066 PPP4R2Q9NY27 417 aa28.17■■■□□ 2.1
CLK3-202ENST00000395066 NUP155O75694 1391 aa28.16■■■□□ 2.1
CLK3-202ENST00000395066 KDM2AQ9Y2K7 1162 aa28.16■■■□□ 2.1
CLK3-202ENST00000395066 ADCY10Q96PN6 1610 aa28.15■■■□□ 2.1
CLK3-202ENST00000395066 PLEKHD1A6NEE1 506 aa28.14■■■□□ 2.1
CLK3-202ENST00000395066 CARMIL2Q6F5E8 1435 aa28.14■■■□□ 2.1
CLK3-202ENST00000395066 HNRNPMP52272 730 aaKnown RBP eCLIP28.11■■■□□ 2.094e-10■■■■■ 38
CLK3-202ENST00000395066 CDC42BPAQ5VT25 1732 aa28.11■■■□□ 2.09
CLK3-202ENST00000395066 C9orf84Q5VXU9 1444 aa28.1■■■□□ 2.09
CLK3-202ENST00000395066 KDM5CP41229 1560 aa28.09■■■□□ 2.09
CLK3-202ENST00000395066 CARD11Q9BXL7 1154 aa28.08■■■□□ 2.09
CLK3-202ENST00000395066 ATP10BO94823 1461 aa28.08■■■□□ 2.09
CLK3-202ENST00000395066 NUP160Q12769 1436 aa28.06■■■□□ 2.08
CLK3-202ENST00000395066 ABCC10Q5T3U5 1492 aa28.05■■■□□ 2.08
CLK3-202ENST00000395066 ERICH6Q7L0X2 663 aa28.05■■■□□ 2.08
CLK3-202ENST00000395066 TSPY4P0CV99 314 aa28.03■■■□□ 2.08
CLK3-202ENST00000395066 TSPY10P0CW01 314 aa28.03■■■□□ 2.08
CLK3-202ENST00000395066 DCAF11Q8TEB1 546 aa28.03■■■□□ 2.08
CLK3-202ENST00000395066 ST20-MTHFSA0A0A6YYL1 179 aa28.02■■■□□ 2.08
CLK3-202ENST00000395066 ABCA8O94911 1581 aa28.01■■■□□ 2.07
CLK3-202ENST00000395066 KIF15Q9NS87 1388 aa28■■■□□ 2.07
CLK3-202ENST00000395066 RALGAPBQ86X10 1494 aa27.98■■■□□ 2.07
CLK3-202ENST00000395066 UHRF1BP1Q6BDS2 1440 aa27.97■■■□□ 2.07
CLK3-202ENST00000395066 TMC1Q8TDI8 760 aa27.95■■■□□ 2.07
CLK3-202ENST00000395066 SMG6Q86US8 1419 aaKnown RBP27.94■■■□□ 2.06
CLK3-202ENST00000395066 PNISRQ8TF01 805 aaKnown RBP27.94■■■□□ 2.06
CLK3-202ENST00000395066 SHANK2Q9UPX8 1470 aa27.94■■■□□ 2.06
CLK3-202ENST00000395066 NUDCQ9Y266 331 aa27.94■■■□□ 2.06
CLK3-202ENST00000395066 RGL3Q3MIN7 710 aa27.89■■■□□ 2.06
CLK3-202ENST00000395066 ARID4BQ4LE39 1312 aaPredicted RBP27.89■■■□□ 2.06
CLK3-202ENST00000395066 ROCK2O75116 1388 aaKnown RBP27.87■■■□□ 2.05
CLK3-202ENST00000395066 ARHGEF12Q9NZN5 1544 aa27.87■■■□□ 2.05
CLK3-202ENST00000395066 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.87■■■□□ 2.053e-9■■■■■ 27.4
CLK3-202ENST00000395066 KDM5DQ9BY66 1539 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 172.4 ms