RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 PLEKHH2Q8IVE3 1493 aa11.21□□□□□ -0.61
LIMA1-202ENST00000394943 CD109Q6YHK3 1445 aa11.2□□□□□ -0.62
LIMA1-202ENST00000394943 NPM1P06748 294 aaKnown RBP eCLIP11.2□□□□□ -0.62
LIMA1-202ENST00000394943 CDK11AQ9UQ88 783 aaPredicted RBP11.2□□□□□ -0.62
LIMA1-202ENST00000394943 DNMT1P26358 1616 aaKnown RBP11.19□□□□□ -0.62
LIMA1-202ENST00000394943 MBD5Q9P267 1494 aa11.19□□□□□ -0.62
LIMA1-202ENST00000394943 SHANK2Q9UPX8 1470 aa11.19□□□□□ -0.62
LIMA1-202ENST00000394943 PLXNC1O60486 1568 aa11.19□□□□□ -0.62
LIMA1-202ENST00000394943 MYOM3Q5VTT5 1437 aa11.18□□□□□ -0.62
LIMA1-202ENST00000394943 MAGI2Q86UL8 1455 aa11.18□□□□□ -0.62
LIMA1-202ENST00000394943 PLEKHD1A6NEE1 506 aa11.18□□□□□ -0.62
LIMA1-202ENST00000394943 RRBP1Q9P2E9 1410 aaKnown RBP11.18□□□□□ -0.62
LIMA1-202ENST00000394943 PTPN23Q9H3S7 1636 aa11.18□□□□□ -0.62
LIMA1-202ENST00000394943 FANCAO15360 1455 aa11.17□□□□□ -0.62
LIMA1-202ENST00000394943 ARHGEF12Q9NZN5 1544 aa11.16□□□□□ -0.62
LIMA1-202ENST00000394943 ADGBQ8N7X0 1667 aa11.16□□□□□ -0.62
LIMA1-202ENST00000394943 MLH3Q9UHC1 1453 aa11.16□□□□□ -0.62
LIMA1-202ENST00000394943 TSPOAP1O95153 1857 aa11.15□□□□□ -0.62
LIMA1-202ENST00000394943 POGZQ7Z3K3 1410 aa11.15□□□□□ -0.62
LIMA1-202ENST00000394943 ARHGEF40Q8TER5 1519 aa11.15□□□□□ -0.62
LIMA1-202ENST00000394943 KDM6BO15054 1643 aa11.15□□□□□ -0.62
LIMA1-202ENST00000394943 AKNAQ7Z591 1439 aa11.15□□□□□ -0.62
LIMA1-202ENST00000394943 KIDINS220Q9ULH0 1771 aa11.15□□□□□ -0.62
LIMA1-202ENST00000394943 RTEL1-TNFRSF6BF6WH68 1400 aa11.14□□□□□ -0.63
LIMA1-202ENST00000394943 HECW2Q9P2P5 1572 aa11.14□□□□□ -0.63
LIMA1-202ENST00000394943 ADGRL2O95490 1459 aa11.14□□□□□ -0.63
LIMA1-202ENST00000394943 FAM135AQ9P2D6 1515 aa11.14□□□□□ -0.63
LIMA1-202ENST00000394943 CAMSAP2Q08AD1 1489 aa11.14□□□□□ -0.63
LIMA1-202ENST00000394943 MTUS2Q5JR59 1369 aa11.13□□□□□ -0.63
LIMA1-202ENST00000394943 COL17A1Q9UMD9 1497 aaPredicted RBP11.13□□□□□ -0.63
LIMA1-202ENST00000394943 EIF2AK4Q9P2K8 1649 aaKnown RBP11.13□□□□□ -0.63
LIMA1-202ENST00000394943 ZFYVE16Q7Z3T8 1539 aa11.13□□□□□ -0.63
LIMA1-202ENST00000394943 FGD6Q6ZV73 1430 aa11.13□□□□□ -0.63
LIMA1-202ENST00000394943 ARHGAP5Q13017 1502 aa11.12□□□□□ -0.63
LIMA1-202ENST00000394943 ZNF518AQ6AHZ1 1483 aa11.12□□□□□ -0.63
LIMA1-202ENST00000394943 KANK4Q5T7N3 995 aaPredicted RBP11.12□□□□□ -0.63
LIMA1-202ENST00000394943 AGLP35573 1532 aa11.12□□□□□ -0.63
LIMA1-202ENST00000394943 DIP2CQ9Y2E4 1556 aa11.1□□□□□ -0.63
LIMA1-202ENST00000394943 ABCA6Q8N139 1617 aa11.1□□□□□ -0.63
LIMA1-202ENST00000394943 SYCP2Q9BX26 1530 aa11.1□□□□□ -0.63
LIMA1-202ENST00000394943 DEPDC5O75140 1603 aa11.1□□□□□ -0.63
LIMA1-202ENST00000394943 SIGLEC1Q9BZZ2 1709 aa11.09□□□□□ -0.63
LIMA1-202ENST00000394943 FAM69CQ0P6D2 419 aa11.09□□□□□ -0.63
LIMA1-202ENST00000394943 DENND4BO75064 1496 aaPredicted RBP11.09□□□□□ -0.63
LIMA1-202ENST00000394943 ADGRL1O94910 1474 aa11.09□□□□□ -0.63
LIMA1-202ENST00000394943 RNF17Q9BXT8 1623 aaKnown RBP11.09□□□□□ -0.63
LIMA1-202ENST00000394943 CCNB3Q8WWL7 1395 aa11.09□□□□□ -0.63
LIMA1-202ENST00000394943 GCC2Q8IWJ2 1684 aa11.08□□□□□ -0.64
LIMA1-202ENST00000394943 CCDC141Q6ZP82 1450 aa11.08□□□□□ -0.64
LIMA1-202ENST00000394943 ATP7AQ04656 1500 aa11.06□□□□□ -0.64
LIMA1-202ENST00000394943 RSPH4AQ5TD94 716 aa11.05□□□□□ -0.64
LIMA1-202ENST00000394943 EHMT2Q96KQ7 1210 aa11.05□□□□□ -0.64
LIMA1-202ENST00000394943 ROCK1Q13464 1354 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 VWDEQ8N2E2 1590 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 KDM5DQ9BY66 1539 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 RANGAP1P46060 587 aaPredicted RBP11.04□□□□□ -0.64
LIMA1-202ENST00000394943 MROH2AA6NES4 1674 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 EFCAB2Q5VUJ9 269 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 ABCC5O15440 1437 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 DAPK1P53355 1430 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 TRAPPC8Q9Y2L5 1435 aa11.04□□□□□ -0.64
LIMA1-202ENST00000394943 ADAMTSL3P82987 1691 aa11.03□□□□□ -0.64
LIMA1-202ENST00000394943 ZC3H13Q5T200 1668 aaKnown RBP11.03□□□□□ -0.64
LIMA1-202ENST00000394943 MROH1Q8NDA8 1641 aa11.02□□□□□ -0.64
LIMA1-202ENST00000394943 UNC13BO14795 1591 aa11.02□□□□□ -0.64
LIMA1-202ENST00000394943 SCAPERQ9BY12 1400 aa11.02□□□□□ -0.64
LIMA1-202ENST00000394943 DUOX2Q9NRD8 1548 aa11.01□□□□□ -0.65
LIMA1-202ENST00000394943 PRDM15P57071 1507 aaPredicted RBP10.99□□□□□ -0.65
LIMA1-202ENST00000394943 ATP10AO60312 1499 aa10.99□□□□□ -0.65
LIMA1-202ENST00000394943 LMTK2Q8IWU2 1503 aa10.99□□□□□ -0.65
LIMA1-202ENST00000394943 C9orf84Q5VXU9 1444 aa10.99□□□□□ -0.65
LIMA1-202ENST00000394943 ERBINQ96RT1 1412 aa10.99□□□□□ -0.65
LIMA1-202ENST00000394943 TTBK1Q5TCY1 1321 aaPredicted RBP10.98□□□□□ -0.65
LIMA1-202ENST00000394943 PTPRKQ15262 1439 aa10.97□□□□□ -0.65
LIMA1-202ENST00000394943 KCNH8Q96L42 1107 aa10.96□□□□□ -0.65
LIMA1-202ENST00000394943 CFDP1Q9UEE9 299 aaPredicted RBP10.95□□□□□ -0.66
LIMA1-202ENST00000394943 NCOA1Q15788 1441 aa10.95□□□□□ -0.66
LIMA1-202ENST00000394943 IQGAP3Q86VI3 1631 aa10.95□□□□□ -0.66
LIMA1-202ENST00000394943 APLP2Q06481 763 aa10.93□□□□□ -0.66
LIMA1-202ENST00000394943 YEATS2Q9ULM3 1422 aa10.93□□□□□ -0.66
LIMA1-202ENST00000394943 ARID3CA6NKF2 412 aa10.93□□□□□ -0.66
LIMA1-202ENST00000394943 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.93□□□□□ -0.66
LIMA1-202ENST00000394943 HNRNPUL2Q1KMD3 747 aaKnown RBP10.93□□□□□ -0.66
LIMA1-202ENST00000394943 A2MP01023 1474 aa10.93□□□□□ -0.66
LIMA1-202ENST00000394943 HFM1A2PYH4 1435 aa10.93□□□□□ -0.66
LIMA1-202ENST00000394943 DHX29Q7Z478 1369 aaKnown RBP10.92□□□□□ -0.66
LIMA1-202ENST00000394943 KDM5AP29375 1690 aaKnown RBP10.91□□□□□ -0.66
LIMA1-202ENST00000394943 ZNF644Q9H582 1327 aaPredicted RBP10.91□□□□□ -0.66
LIMA1-202ENST00000394943 ATP1B4Q9UN42 357 aaPredicted RBP10.9□□□□□ -0.66
LIMA1-202ENST00000394943 FER1L4A9Z1Z3 1794 aa10.9□□□□□ -0.67
LIMA1-202ENST00000394943 TET3O43151 1660 aa10.89□□□□□ -0.67
LIMA1-202ENST00000394943 ACIN1Q9UKV3 1341 aaKnown RBP10.89□□□□□ -0.67
LIMA1-202ENST00000394943 TRHP20396 242 aaPredicted RBP10.88□□□□□ -0.67
LIMA1-202ENST00000394943 PPP6R1Q9UPN7 881 aa10.88□□□□□ -0.67
LIMA1-202ENST00000394943 NEURL4Q96JN8 1562 aa10.88□□□□□ -0.67
LIMA1-202ENST00000394943 NAIPQ13075 1403 aa10.88□□□□□ -0.67
LIMA1-202ENST00000394943 HRCP23327 699 aa10.88□□□□□ -0.67
LIMA1-202ENST00000394943 CAMSAP1Q5T5Y3 1602 aa10.87□□□□□ -0.67
LIMA1-202ENST00000394943 ARHGAP31Q2M1Z3 1444 aa10.87□□□□□ -0.67
LIMA1-202ENST00000394943 ZNF142P52746 1687 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms