RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 ZNF644Q9H582 1327 aaPredicted RBP27.49■■□□□ 1.99
SHROOM1-202ENST00000378676 FOXD1Q16676 465 aa27.47■■□□□ 1.99
SHROOM1-202ENST00000378676 SYNJ2O15056 1496 aa27.47■■□□□ 1.99
SHROOM1-202ENST00000378676 ITSN2Q9NZM3 1697 aa27.46■■□□□ 1.99
SHROOM1-202ENST00000378676 HSPA5P11021 654 aaKnown RBP27.44■■□□□ 1.98
SHROOM1-202ENST00000378676 KIF14Q15058 1648 aa27.44■■□□□ 1.98
SHROOM1-202ENST00000378676 ADGBQ8N7X0 1667 aa27.44■■□□□ 1.98
SHROOM1-202ENST00000378676 ADCY10Q96PN6 1610 aa27.43■■□□□ 1.98
SHROOM1-202ENST00000378676 PRG4Q92954 1404 aaPredicted RBP27.43■■□□□ 1.98
SHROOM1-202ENST00000378676 PLB1Q6P1J6 1458 aa27.42■■□□□ 1.98
SHROOM1-202ENST00000378676 CHMP7Q8WUX9 453 aaPredicted RBP27.42■■□□□ 1.98
SHROOM1-202ENST00000378676 TROQ12816 1431 aaPredicted RBP27.41■■□□□ 1.98
SHROOM1-202ENST00000378676 CAMSAP2Q08AD1 1489 aa27.41■■□□□ 1.98
SHROOM1-202ENST00000378676 CROCC2H7BZ55 1655 aa27.41■■□□□ 1.98
SHROOM1-202ENST00000378676 WASHC2AQ641Q2 1341 aa27.4■■□□□ 1.98
SHROOM1-202ENST00000378676 L3MBTL2Q969R5 705 aa27.39■■□□□ 1.98
SHROOM1-202ENST00000378676 ANKRD30BQ9BXX2 1392 aa27.39■■□□□ 1.98
SHROOM1-202ENST00000378676 RPRD2Q5VT52 1461 aaKnown RBP27.39■■□□□ 1.97
SHROOM1-202ENST00000378676 TEX14Q8IWB6 1497 aa27.38■■□□□ 1.97
SHROOM1-202ENST00000378676 CDK11AQ9UQ88 783 aaPredicted RBP27.36■■□□□ 1.97
SHROOM1-202ENST00000378676 FBLN2P98095 1184 aa27.33■■□□□ 1.97
SHROOM1-202ENST00000378676 GPATCH8Q9UKJ3 1502 aaKnown RBP27.33■■□□□ 1.97
SHROOM1-202ENST00000378676 EIF4G2P78344 907 aaKnown RBP eCLIP27.33■■□□□ 1.96
SHROOM1-202ENST00000378676 FKBP8Q14318 412 aa27.33■■□□□ 1.96
SHROOM1-202ENST00000378676 BCANQ96GW7 911 aa27.33■■□□□ 1.96
SHROOM1-202ENST00000378676 PZPP20742 1482 aa27.31■■□□□ 1.96
SHROOM1-202ENST00000378676 POLR1AO95602 1720 aaPredicted RBP27.3■■□□□ 1.96
SHROOM1-202ENST00000378676 NUP160Q12769 1436 aa27.3■■□□□ 1.96
SHROOM1-202ENST00000378676 CDC42BPAQ5VT25 1732 aa27.29■■□□□ 1.96
SHROOM1-202ENST00000378676 CNTLNQ9NXG0 1405 aa27.28■■□□□ 1.96
SHROOM1-202ENST00000378676 NBPF8Q3BBV2 869 aa27.27■■□□□ 1.96
SHROOM1-202ENST00000378676 TSHZ2Q9NRE2 1034 aa27.27■■□□□ 1.96
SHROOM1-202ENST00000378676 SLC4A1APQ9BWU0 796 aaKnown RBP27.26■■□□□ 1.95
SHROOM1-202ENST00000378676 CFDP1Q9UEE9 299 aaPredicted RBP27.26■■□□□ 1.95
SHROOM1-202ENST00000378676 NCOA1Q15788 1441 aa27.26■■□□□ 1.95
SHROOM1-202ENST00000378676 ADGRL2O95490 1459 aa27.25■■□□□ 1.95
SHROOM1-202ENST00000378676 CARMIL2Q6F5E8 1435 aa27.24■■□□□ 1.95
SHROOM1-202ENST00000378676 ABCA8O94911 1581 aa27.24■■□□□ 1.95
SHROOM1-202ENST00000378676 C11orf95C9JLR9 678 aaPredicted RBP27.23■■□□□ 1.95
SHROOM1-202ENST00000378676 CCDC7Q96M83 1385 aa27.21■■□□□ 1.95
SHROOM1-202ENST00000378676 JPH4Q96JJ6 628 aa27.2■■□□□ 1.94
SHROOM1-202ENST00000378676 ZNF777Q9ULD5 760 aaPredicted RBP27.2■■□□□ 1.94
SHROOM1-202ENST00000378676 SPATA31E1Q6ZUB1 1445 aa27.17■■□□□ 1.94
SHROOM1-202ENST00000378676 MBD5Q9P267 1494 aa27.16■■□□□ 1.94
SHROOM1-202ENST00000378676 NEFLP07196 543 aa27.16■■□□□ 1.94
SHROOM1-202ENST00000378676 ABCC10Q5T3U5 1492 aa27.15■■□□□ 1.94
SHROOM1-202ENST00000378676 CHD1O14646 1710 aa27.15■■□□□ 1.94
SHROOM1-202ENST00000378676 HNRNPUQ00839 825 aaKnown RBP eCLIP27.14■■□□□ 1.93
SHROOM1-202ENST00000378676 KIAA1107Q9UPP5 1409 aa27.13■■□□□ 1.93
SHROOM1-202ENST00000378676 ATP10BO94823 1461 aa27.12■■□□□ 1.93
SHROOM1-202ENST00000378676 CCDC184Q52MB2 194 aa27.11■■□□□ 1.93
SHROOM1-202ENST00000378676 ANKRD30AQ9BXX3 1397 aa27.11■■□□□ 1.93
SHROOM1-202ENST00000378676 SHANK2Q9UPX8 1470 aa27.08■■□□□ 1.93
SHROOM1-202ENST00000378676 ANKRD50Q9ULJ7 1429 aa27.08■■□□□ 1.93
SHROOM1-202ENST00000378676 KIF7Q2M1P5 1343 aa27.07■■□□□ 1.92
SHROOM1-202ENST00000378676 BCORL1Q5H9F3 1711 aa27.07■■□□□ 1.92
SHROOM1-202ENST00000378676 PRKRIP1Q9H875 184 aaPredicted RBP27.05■■□□□ 1.92
SHROOM1-202ENST00000378676 C9orf84Q5VXU9 1444 aa27.05■■□□□ 1.92
SHROOM1-202ENST00000378676 PLEKHD1A6NEE1 506 aa27.04■■□□□ 1.92
SHROOM1-202ENST00000378676 PKD2Q13563 968 aa27.04■■□□□ 1.92
SHROOM1-202ENST00000378676 KDM5CP41229 1560 aa27.01■■□□□ 1.91
SHROOM1-202ENST00000378676 CDC42BPBQ9Y5S2 1711 aa26.99■■□□□ 1.91
SHROOM1-202ENST00000378676 KDM5DQ9BY66 1539 aa26.99■■□□□ 1.91
SHROOM1-202ENST00000378676 ARHGEF5Q12774 1597 aa26.98■■□□□ 1.91
SHROOM1-202ENST00000378676 PREX2Q70Z35 1606 aa26.96■■□□□ 1.91
SHROOM1-202ENST00000378676 SAMD9LQ8IVG5 1584 aa26.95■■□□□ 1.91
SHROOM1-202ENST00000378676 USP47Q96K76 1375 aa26.95■■□□□ 1.9
SHROOM1-202ENST00000378676 ZNF326Q5BKZ1 582 aaKnown RBP26.94■■□□□ 1.9
SHROOM1-202ENST00000378676 NUP155O75694 1391 aa26.94■■□□□ 1.9
SHROOM1-202ENST00000378676 MRS2Q9HD23 443 aa26.92■■□□□ 1.9
SHROOM1-202ENST00000378676 FAM9BQ8IZU0 186 aa26.9■■□□□ 1.9
SHROOM1-202ENST00000378676 UHRF1BP1Q6BDS2 1440 aa26.9■■□□□ 1.9
SHROOM1-202ENST00000378676 RALGAPBQ86X10 1494 aa26.9■■□□□ 1.9
SHROOM1-202ENST00000378676 KIF15Q9NS87 1388 aa26.9■■□□□ 1.9
SHROOM1-202ENST00000378676 ARHGEF12Q9NZN5 1544 aa26.89■■□□□ 1.9
SHROOM1-202ENST00000378676 SHROOM2Q13796 1616 aa26.89■■□□□ 1.89
SHROOM1-202ENST00000378676 DHX29Q7Z478 1369 aaKnown RBP26.89■■□□□ 1.89
SHROOM1-202ENST00000378676 PTPRGP23470 1445 aa26.88■■□□□ 1.89
SHROOM1-202ENST00000378676 HNRNPMP52272 730 aaKnown RBP eCLIP26.88■■□□□ 1.89
SHROOM1-202ENST00000378676 IRX6P78412 446 aaPredicted RBP26.88■■□□□ 1.89
SHROOM1-202ENST00000378676 CCDC141Q6ZP82 1450 aa26.85■■□□□ 1.89
SHROOM1-202ENST00000378676 TSPY4P0CV99 314 aa26.85■■□□□ 1.89
SHROOM1-202ENST00000378676 TSPY10P0CW01 314 aa26.85■■□□□ 1.89
SHROOM1-202ENST00000378676 TTC37Q6PGP7 1564 aa26.84■■□□□ 1.89
SHROOM1-202ENST00000378676 CLASP1Q7Z460 1538 aa26.81■■□□□ 1.88
SHROOM1-202ENST00000378676 ZBED9Q6R2W3 1325 aa26.81■■□□□ 1.88
SHROOM1-202ENST00000378676 FAM135AQ9P2D6 1515 aa26.8■■□□□ 1.88
SHROOM1-202ENST00000378676 SYCP2Q9BX26 1530 aa26.8■■□□□ 1.88
SHROOM1-202ENST00000378676 POLR3GLQ9BT43 218 aa26.79■■□□□ 1.88
SHROOM1-202ENST00000378676 MAST1Q9Y2H9 1570 aa26.75■■□□□ 1.87
SHROOM1-202ENST00000378676 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.75■■□□□ 1.87
SHROOM1-202ENST00000378676 UNC13BO14795 1591 aa26.74■■□□□ 1.87
SHROOM1-202ENST00000378676 MYO5CQ9NQX4 1742 aa26.74■■□□□ 1.87
SHROOM1-202ENST00000378676 ERCC6L2Q5T890 1561 aa26.74■■□□□ 1.87
SHROOM1-202ENST00000378676 E9PCH4 1651 aa26.74■■□□□ 1.87
SHROOM1-202ENST00000378676 CNGB1Q14028 1251 aaPredicted RBP26.73■■□□□ 1.87
SHROOM1-202ENST00000378676 RBM19Q9Y4C8 960 aaKnown RBP26.73■■□□□ 1.87
SHROOM1-202ENST00000378676 ARHGAP5Q13017 1502 aa26.73■■□□□ 1.87
SHROOM1-202ENST00000378676 CARD11Q9BXL7 1154 aa26.72■■□□□ 1.87
SHROOM1-202ENST00000378676 ARID4BQ4LE39 1312 aaPredicted RBP26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms