RNA–Protein interactions for RNA: ENST00000376259.6

TNFRSF1B-201, Transcript of TNF receptor superfamily member 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1B, Length 3,683 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1B-201ENST00000376259 NAIPQ13075 1403 aa19.17■□□□□ 0.66
TNFRSF1B-201ENST00000376259 AQRO60306 1485 aaKnown RBP eCLIP19.16■□□□□ 0.662e-7■■■■■ 45
TNFRSF1B-201ENST00000376259 ARXQ96QS3 562 aa19.16■□□□□ 0.66
TNFRSF1B-201ENST00000376259 NUP155O75694 1391 aa19.16■□□□□ 0.66
TNFRSF1B-201ENST00000376259 CANXP27824 592 aaKnown RBP19.15■□□□□ 0.66
TNFRSF1B-201ENST00000376259 POLA1P09884 1462 aaPredicted RBP19.15■□□□□ 0.66
TNFRSF1B-201ENST00000376259 NUDCQ9Y266 331 aa19.14■□□□□ 0.66
TNFRSF1B-201ENST00000376259 PAK3O75914 559 aaPredicted RBP19.14■□□□□ 0.65
TNFRSF1B-201ENST00000376259 AKNAQ7Z591 1439 aa19.14■□□□□ 0.65
TNFRSF1B-201ENST00000376259 BIVM-ERCC5R4GMW8 1640 aa19.13■□□□□ 0.65
TNFRSF1B-201ENST00000376259 RGS3P49796 1198 aa19.12■□□□□ 0.65
TNFRSF1B-201ENST00000376259 EXOC6Q8TAG9 804 aa19.12■□□□□ 0.65
TNFRSF1B-201ENST00000376259 ZBED9Q6R2W3 1325 aa19.12■□□□□ 0.65
TNFRSF1B-201ENST00000376259 GAPVD1Q14C86 1478 aa19.12■□□□□ 0.65
TNFRSF1B-201ENST00000376259 HFM1A2PYH4 1435 aa19.11■□□□□ 0.65
TNFRSF1B-201ENST00000376259 NEUROD2Q15784 382 aa19.11■□□□□ 0.65
TNFRSF1B-201ENST00000376259 WDR43Q15061 677 aaKnown RBP eCLIP19.1■□□□□ 0.65
TNFRSF1B-201ENST00000376259 TNNT2P45379 298 aaPredicted RBP19.09■□□□□ 0.65
TNFRSF1B-201ENST00000376259 SKAP1Q86WV1 359 aa19.09■□□□□ 0.65
TNFRSF1B-201ENST00000376259 FYCO1Q9BQS8 1478 aa19.09■□□□□ 0.65
TNFRSF1B-201ENST00000376259 USP47Q96K76 1375 aa19.08■□□□□ 0.65
TNFRSF1B-201ENST00000376259 CNTLNQ9NXG0 1405 aa19.08■□□□□ 0.64
TNFRSF1B-201ENST00000376259 NEFMP07197 916 aa19.07■□□□□ 0.64
TNFRSF1B-201ENST00000376259 RCAN3Q9UKA8 241 aa19.07■□□□□ 0.64
TNFRSF1B-201ENST00000376259 HMGXB3Q12766 1538 aa19.06■□□□□ 0.64
TNFRSF1B-201ENST00000376259 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
TNFRSF1B-201ENST00000376259 SLC4A3P48751 1232 aa19.05■□□□□ 0.64
TNFRSF1B-201ENST00000376259 FANCIQ9NVI1 1328 aa19.05■□□□□ 0.64
TNFRSF1B-201ENST00000376259 CDCA7LQ96GN5 454 aa19.04■□□□□ 0.64
TNFRSF1B-201ENST00000376259 CDK13Q14004 1512 aaKnown RBP19.01■□□□□ 0.63
TNFRSF1B-201ENST00000376259 ROCK2O75116 1388 aaKnown RBP19.01■□□□□ 0.63
TNFRSF1B-201ENST00000376259 KNSTRNQ9Y448 316 aa18.98■□□□□ 0.63
TNFRSF1B-201ENST00000376259 ERICH6BQ5W0A0 696 aa18.98■□□□□ 0.63
TNFRSF1B-201ENST00000376259 EIF5BO60841 1220 aaKnown RBP18.97■□□□□ 0.63
TNFRSF1B-201ENST00000376259 IPO9Q96P70 1041 aaKnown RBP18.97■□□□□ 0.63
TNFRSF1B-201ENST00000376259 CCDC146Q8IYE0 955 aa18.97■□□□□ 0.63
TNFRSF1B-201ENST00000376259 NBPF1Q3BBV0 1214 aa18.96■□□□□ 0.63
TNFRSF1B-201ENST00000376259 JPH4Q96JJ6 628 aa18.96■□□□□ 0.63
TNFRSF1B-201ENST00000376259 PANK3Q9H999 370 aa18.94■□□□□ 0.62
TNFRSF1B-201ENST00000376259 CC2D2AQ9P2K1 1620 aa18.94■□□□□ 0.62
TNFRSF1B-201ENST00000376259 ANKRD30AQ9BXX3 1397 aa18.93■□□□□ 0.62
TNFRSF1B-201ENST00000376259 FRAT1Q92837 279 aaPredicted RBP18.93■□□□□ 0.62
TNFRSF1B-201ENST00000376259 PRG4Q92954 1404 aaPredicted RBP18.92■□□□□ 0.62
TNFRSF1B-201ENST00000376259 RRP1P56182 461 aaKnown RBP18.92■□□□□ 0.62
TNFRSF1B-201ENST00000376259 PNISRQ8TF01 805 aaKnown RBP18.9■□□□□ 0.62
TNFRSF1B-201ENST00000376259 CRBNQ96SW2 442 aa18.9■□□□□ 0.62
TNFRSF1B-201ENST00000376259 KTN1Q86UP2 1357 aaKnown RBP18.9■□□□□ 0.62
TNFRSF1B-201ENST00000376259 PDE4AP27815 886 aa18.89■□□□□ 0.62
TNFRSF1B-201ENST00000376259 NLRP13Q86W25 1043 aa18.89■□□□□ 0.62
TNFRSF1B-201ENST00000376259 PTPN23Q9H3S7 1636 aa18.88■□□□□ 0.61
TNFRSF1B-201ENST00000376259 MAP3K1Q13233 1512 aa18.88■□□□□ 0.61
TNFRSF1B-201ENST00000376259 ABCA10Q8WWZ4 1543 aa18.87■□□□□ 0.61
TNFRSF1B-201ENST00000376259 MYBBP1AQ9BQG0 1328 aaKnown RBP18.87■□□□□ 0.61
TNFRSF1B-201ENST00000376259 TMF1P82094 1093 aa18.87■□□□□ 0.61
TNFRSF1B-201ENST00000376259 RALBP1Q15311 655 aa18.86■□□□□ 0.61
TNFRSF1B-201ENST00000376259 ANKRD30BQ9BXX2 1392 aa18.86■□□□□ 0.61
TNFRSF1B-201ENST00000376259 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.86■□□□□ 0.612e-7■■■□□ 18.1
TNFRSF1B-201ENST00000376259 PRDM2Q13029 1718 aa18.86■□□□□ 0.61
TNFRSF1B-201ENST00000376259 EFCAB5A4FU69 1503 aa18.86■□□□□ 0.61
TNFRSF1B-201ENST00000376259 ERCC6Q03468 1493 aa18.84■□□□□ 0.61
TNFRSF1B-201ENST00000376259 SPRYD3Q8NCJ5 442 aa18.83■□□□□ 0.61
TNFRSF1B-201ENST00000376259 KIF15Q9NS87 1388 aa18.83■□□□□ 0.6
TNFRSF1B-201ENST00000376259 SAFB2Q14151 953 aaKnown RBP eCLIP18.83■□□□□ 0.6
TNFRSF1B-201ENST00000376259 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.82■□□□□ 0.6
TNFRSF1B-201ENST00000376259 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.82■□□□□ 0.6
TNFRSF1B-201ENST00000376259 EPRSP07814 1512 aaKnown RBP18.82■□□□□ 0.6
TNFRSF1B-201ENST00000376259 DNMBPQ6XZF7 1577 aa18.81■□□□□ 0.6
TNFRSF1B-201ENST00000376259 URB2Q14146 1524 aaKnown RBP18.8■□□□□ 0.6
TNFRSF1B-201ENST00000376259 ANKRD50Q9ULJ7 1429 aa18.8■□□□□ 0.6
TNFRSF1B-201ENST00000376259 DAPK1P53355 1430 aa18.8■□□□□ 0.6
TNFRSF1B-201ENST00000376259 NCOA1Q15788 1441 aa18.8■□□□□ 0.6
TNFRSF1B-201ENST00000376259 RRP7AQ9Y3A4 280 aaKnown RBP18.79■□□□□ 0.6
TNFRSF1B-201ENST00000376259 TCERG1O14776 1098 aaKnown RBP18.79■□□□□ 0.6
TNFRSF1B-201ENST00000376259 NUTM2DQ5VT03 806 aaPredicted RBP18.78■□□□□ 0.6
TNFRSF1B-201ENST00000376259 EHBP1L1Q8N3D4 1523 aa18.78■□□□□ 0.6
TNFRSF1B-201ENST00000376259 BCL2L13Q9BXK5 485 aa18.78■□□□□ 0.6
TNFRSF1B-201ENST00000376259 ABCC5O15440 1437 aa18.77■□□□□ 0.6
TNFRSF1B-201ENST00000376259 CLUAP1Q96AJ1 413 aa18.77■□□□□ 0.6
TNFRSF1B-201ENST00000376259 ADAMTS8Q9UP79 889 aa18.77■□□□□ 0.6
TNFRSF1B-201ENST00000376259 SUPT6HQ7KZ85 1726 aaKnown RBP18.77■□□□□ 0.59
TNFRSF1B-201ENST00000376259 SLKQ9H2G2 1235 aaPredicted RBP18.75■□□□□ 0.59
TNFRSF1B-201ENST00000376259 SNAPC4Q5SXM2 1469 aa18.75■□□□□ 0.59
TNFRSF1B-201ENST00000376259 C20orf194Q5TEA3 1177 aa18.75■□□□□ 0.59
TNFRSF1B-201ENST00000376259 IL27Q8NEV9 243 aa18.73■□□□□ 0.59
TNFRSF1B-201ENST00000376259 APAF1O14727 1248 aa18.73■□□□□ 0.59
TNFRSF1B-201ENST00000376259 THOC2Q8NI27 1593 aaKnown RBP18.72■□□□□ 0.59
TNFRSF1B-201ENST00000376259 CCDC144AA2RUR9 1427 aa18.72■□□□□ 0.59
TNFRSF1B-201ENST00000376259 PPM1GO15355 546 aaPredicted RBP18.71■□□□□ 0.59
TNFRSF1B-201ENST00000376259 CARMIL2Q6F5E8 1435 aa18.71■□□□□ 0.59
TNFRSF1B-201ENST00000376259 DDRGK1Q96HY6 314 aa18.71■□□□□ 0.59
TNFRSF1B-201ENST00000376259 GRIN2BQ13224 1484 aa18.7■□□□□ 0.58
TNFRSF1B-201ENST00000376259 PLB1Q6P1J6 1458 aa18.7■□□□□ 0.58
TNFRSF1B-201ENST00000376259 GOLGA2Q08379 1002 aa18.69■□□□□ 0.58
TNFRSF1B-201ENST00000376259 KIAA1107Q9UPP5 1409 aa18.69■□□□□ 0.58
TNFRSF1B-201ENST00000376259 MIA2Q96PC5 1412 aa18.69■□□□□ 0.58
TNFRSF1B-201ENST00000376259 SMG6Q86US8 1419 aaKnown RBP18.68■□□□□ 0.58
TNFRSF1B-201ENST00000376259 RPRD2Q5VT52 1461 aaKnown RBP18.68■□□□□ 0.58
TNFRSF1B-201ENST00000376259 ZNF608Q9ULD9 1512 aaPredicted RBP18.66■□□□□ 0.58
TNFRSF1B-201ENST00000376259 U2SURPO15042 1029 aaKnown RBP18.65■□□□□ 0.58
TNFRSF1B-201ENST00000376259 KIF3BO15066 747 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms