RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 TRIM52Q96A61 297 aa15.66■□□□□ 0.1
CCDC40-203ENST00000374877 KDM5BQ9UGL1 1544 aa15.65■□□□□ 0.1
CCDC40-203ENST00000374877 ARID3CA6NKF2 412 aa15.65■□□□□ 0.1
CCDC40-203ENST00000374877 FGD6Q6ZV73 1430 aa15.65■□□□□ 0.1
CCDC40-203ENST00000374877 PLEKHD1A6NEE1 506 aa15.64■□□□□ 0.09
CCDC40-203ENST00000374877 PPP1R15AO75807 674 aaPredicted RBP15.63■□□□□ 0.09
CCDC40-203ENST00000374877 MIA2Q96PC5 1412 aa15.62■□□□□ 0.09
CCDC40-203ENST00000374877 ANP32CO43423 234 aa15.62■□□□□ 0.09
CCDC40-203ENST00000374877 KIF14Q15058 1648 aa15.6■□□□□ 0.09
CCDC40-203ENST00000374877 TCOF1Q13428 1488 aaKnown RBP15.6■□□□□ 0.09
CCDC40-203ENST00000374877 ZCCHC11Q5TAX3 1644 aaKnown RBP15.59■□□□□ 0.09
CCDC40-203ENST00000374877 RBM19Q9Y4C8 960 aaKnown RBP15.59■□□□□ 0.09
CCDC40-203ENST00000374877 ABCC10Q5T3U5 1492 aa15.58■□□□□ 0.08
CCDC40-203ENST00000374877 PTPN23Q9H3S7 1636 aa15.57■□□□□ 0.08
CCDC40-203ENST00000374877 CCER2I3L3R5 266 aa15.56■□□□□ 0.08
CCDC40-203ENST00000374877 ITSN2Q9NZM3 1697 aa15.56■□□□□ 0.08
CCDC40-203ENST00000374877 TIMELESSQ9UNS1 1208 aa15.55■□□□□ 0.08
CCDC40-203ENST00000374877 GPATCH8Q9UKJ3 1502 aaKnown RBP15.54■□□□□ 0.08
CCDC40-203ENST00000374877 BCL11AQ9H165 835 aa15.51■□□□□ 0.07
CCDC40-203ENST00000374877 RIMBP3CA6NJZ7 1639 aa15.51■□□□□ 0.07
CCDC40-203ENST00000374877 RIMBP3BA6NNM3 1639 aa15.51■□□□□ 0.07
CCDC40-203ENST00000374877 RIMBP3Q9UFD9 1639 aa15.51■□□□□ 0.07
CCDC40-203ENST00000374877 TONSLQ96HA7 1378 aa15.5■□□□□ 0.07
CCDC40-203ENST00000374877 WDR7Q9Y4E6 1490 aa15.49■□□□□ 0.07
CCDC40-203ENST00000374877 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.48■□□□□ 0.07
CCDC40-203ENST00000374877 CDC42BPAQ5VT25 1732 aa15.48■□□□□ 0.07
CCDC40-203ENST00000374877 CFDP1Q9UEE9 299 aaPredicted RBP15.47■□□□□ 0.07
CCDC40-203ENST00000374877 PREX2Q70Z35 1606 aa15.46■□□□□ 0.07
CCDC40-203ENST00000374877 NPM1P06748 294 aaKnown RBP eCLIP15.46■□□□□ 0.07
CCDC40-203ENST00000374877 CAMSAP2Q08AD1 1489 aa15.45■□□□□ 0.06
CCDC40-203ENST00000374877 TTC37Q6PGP7 1564 aa15.45■□□□□ 0.06
CCDC40-203ENST00000374877 ASXL2Q76L83 1435 aa15.44■□□□□ 0.06
CCDC40-203ENST00000374877 HNRNPUQ00839 825 aaKnown RBP eCLIP15.44■□□□□ 0.06
CCDC40-203ENST00000374877 IRX6P78412 446 aaPredicted RBP15.44■□□□□ 0.06
CCDC40-203ENST00000374877 AKNAQ7Z591 1439 aa15.44■□□□□ 0.06
CCDC40-203ENST00000374877 DNMT1P26358 1616 aaKnown RBP15.44■□□□□ 0.06
CCDC40-203ENST00000374877 ARAP3Q8WWN8 1544 aa15.43■□□□□ 0.06
CCDC40-203ENST00000374877 PTPRKQ15262 1439 aa15.42■□□□□ 0.06
CCDC40-203ENST00000374877 MYO5CQ9NQX4 1742 aa15.42■□□□□ 0.06
CCDC40-203ENST00000374877 DAPK1P53355 1430 aa15.41■□□□□ 0.06
CCDC40-203ENST00000374877 PLCH2O75038 1416 aa15.41■□□□□ 0.06
CCDC40-203ENST00000374877 CDC42BPBQ9Y5S2 1711 aa15.4■□□□□ 0.06
CCDC40-203ENST00000374877 ABCA9Q8IUA7 1624 aa15.4■□□□□ 0.06
CCDC40-203ENST00000374877 HFM1A2PYH4 1435 aa15.4■□□□□ 0.06
CCDC40-203ENST00000374877 ABCC5O15440 1437 aa15.4■□□□□ 0.06
CCDC40-203ENST00000374877 PLEKHH2Q8IVE3 1493 aa15.39■□□□□ 0.05
CCDC40-203ENST00000374877 ROCK1Q13464 1354 aa15.39■□□□□ 0.05
CCDC40-203ENST00000374877 ARHGEF5Q12774 1597 aa15.39■□□□□ 0.05
CCDC40-203ENST00000374877 ZNF644Q9H582 1327 aaPredicted RBP15.38■□□□□ 0.05
CCDC40-203ENST00000374877 MSH5O43196 834 aa15.38■□□□□ 0.05
CCDC40-203ENST00000374877 ARHGAP5Q13017 1502 aa15.38■□□□□ 0.05
CCDC40-203ENST00000374877 SHANK2Q9UPX8 1470 aa15.37■□□□□ 0.05
CCDC40-203ENST00000374877 SAMD9LQ8IVG5 1584 aa15.37■□□□□ 0.05
CCDC40-203ENST00000374877 KIAA1107Q9UPP5 1409 aa15.37■□□□□ 0.05
CCDC40-203ENST00000374877 CYB5RLQ6IPT4 315 aa15.37■□□□□ 0.05
CCDC40-203ENST00000374877 CROCC2H7BZ55 1655 aa15.35■□□□□ 0.05
CCDC40-203ENST00000374877 RSPH4AQ5TD94 716 aa15.35■□□□□ 0.05
CCDC40-203ENST00000374877 ERICH6Q7L0X2 663 aa15.35■□□□□ 0.05
CCDC40-203ENST00000374877 NAIPQ13075 1403 aa15.35■□□□□ 0.05
CCDC40-203ENST00000374877 ADGRL2O95490 1459 aa15.35■□□□□ 0.05
CCDC40-203ENST00000374877 MBD5Q9P267 1494 aa15.35■□□□□ 0.05
CCDC40-203ENST00000374877 ZNF777Q9ULD5 760 aaPredicted RBP15.34■□□□□ 0.05
CCDC40-203ENST00000374877 GCC2Q8IWJ2 1684 aa15.34■□□□□ 0.05
CCDC40-203ENST00000374877 EFCAB2Q5VUJ9 269 aa15.34■□□□□ 0.05
CCDC40-203ENST00000374877 CCDC141Q6ZP82 1450 aa15.32■□□□□ 0.04
CCDC40-203ENST00000374877 ADGBQ8N7X0 1667 aa15.32■□□□□ 0.04
CCDC40-203ENST00000374877 ABCC1P33527 1531 aa15.3■□□□□ 0.04
CCDC40-203ENST00000374877 GLI2P10070 1586 aa15.3■□□□□ 0.04
CCDC40-203ENST00000374877 MAST1Q9Y2H9 1570 aa15.3■□□□□ 0.04
CCDC40-203ENST00000374877 SYCP2Q9BX26 1530 aa15.29■□□□□ 0.04
CCDC40-203ENST00000374877 FANCIQ9NVI1 1328 aa15.29■□□□□ 0.04
CCDC40-203ENST00000374877 HSPA5P11021 654 aaKnown RBP15.29■□□□□ 0.04
CCDC40-203ENST00000374877 C9orf84Q5VXU9 1444 aa15.29■□□□□ 0.04
CCDC40-203ENST00000374877 NCOA1Q15788 1441 aa15.28■□□□□ 0.04
CCDC40-203ENST00000374877 WASHC2AQ641Q2 1341 aa15.28■□□□□ 0.04
CCDC40-203ENST00000374877 ANKRD30AQ9BXX3 1397 aa15.28■□□□□ 0.04
CCDC40-203ENST00000374877 CHIC2Q9UKJ5 165 aa15.27■□□□□ 0.04
CCDC40-203ENST00000374877 FANCAO15360 1455 aa15.27■□□□□ 0.04
CCDC40-203ENST00000374877 CFAP74Q9C0B2 1584 aa15.27■□□□□ 0.04
CCDC40-203ENST00000374877 TSPY4P0CV99 314 aa15.26■□□□□ 0.03
CCDC40-203ENST00000374877 TSPY10P0CW01 314 aa15.26■□□□□ 0.03
CCDC40-203ENST00000374877 HNRNPMP52272 730 aaKnown RBP eCLIP15.26■□□□□ 0.03
CCDC40-203ENST00000374877 RRP7BPQ9NSQ0 103 aa15.26■□□□□ 0.03
CCDC40-203ENST00000374877 CD109Q6YHK3 1445 aa15.26■□□□□ 0.03
CCDC40-203ENST00000374877 ARHGEF12Q9NZN5 1544 aa15.25■□□□□ 0.03
CCDC40-203ENST00000374877 CCDC184Q52MB2 194 aa15.24■□□□□ 0.03
CCDC40-203ENST00000374877 FAM9BQ8IZU0 186 aa15.24■□□□□ 0.03
CCDC40-203ENST00000374877 EIF4G2P78344 907 aaKnown RBP eCLIP15.23■□□□□ 0.03
CCDC40-203ENST00000374877 PPP4R2Q9NY27 417 aa15.23■□□□□ 0.03
CCDC40-203ENST00000374877 MAP3K4Q9Y6R4 1608 aa15.23■□□□□ 0.03
CCDC40-203ENST00000374877 PLXNC1O60486 1568 aa15.22■□□□□ 0.03
CCDC40-203ENST00000374877 NEO1Q92859 1461 aa15.22■□□□□ 0.03
CCDC40-203ENST00000374877 DIP2BQ9P265 1576 aa15.21■□□□□ 0.03
CCDC40-203ENST00000374877 ADGRL1O94910 1474 aa15.21■□□□□ 0.03
CCDC40-203ENST00000374877 RTEL1-TNFRSF6BF6WH68 1400 aa15.21■□□□□ 0.02
CCDC40-203ENST00000374877 B4GALNT3Q6L9W6 998 aa15.2■□□□□ 0.02
CCDC40-203ENST00000374877 TRAPPC8Q9Y2L5 1435 aa15.2■□□□□ 0.02
CCDC40-203ENST00000374877 ERICH6BQ5W0A0 696 aa15.2■□□□□ 0.02
CCDC40-203ENST00000374877 MRS2Q9HD23 443 aa15.2■□□□□ 0.02
CCDC40-203ENST00000374877 KDM6BO15054 1643 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms