RNA–Protein interactions for RNA: ENST00000371320.7

SSBP3-204, Transcript of single stranded DNA binding protein 3, human

APPRIS P3 TSL 1 (best) BASIC

Gene SSBP3, Length 2,077 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP3-204	ENST00000371320	ZNF644	Q9H582	1327 aa	Predicted RBP	41.16	■■■■■ 4.18
SSBP3-204	ENST00000371320	DENND4B	O75064	1496 aa	Predicted RBP	41.15	■■■■■ 4.18
SSBP3-204	ENST00000371320	HIRIP3	Q9BW71	556 aa	Predicted RBP	41.14	■■■■■ 4.18
SSBP3-204	ENST00000371320	MPHOSPH9	Q99550	1183 aa		41.12	■■■■■ 4.17
SSBP3-204	ENST00000371320	KDM5B	Q9UGL1	1544 aa		41.07	■■■■■ 4.17
SSBP3-204	ENST00000371320	CFDP1	Q9UEE9	299 aa	Predicted RBP	41.05	■■■■■ 4.16
SSBP3-204	ENST00000371320	ITSN2	Q9NZM3	1697 aa		41.01	■■■■■ 4.15
SSBP3-204	ENST00000371320	ADCY10	Q96PN6	1610 aa		41	■■■■■ 4.15
SSBP3-204	ENST00000371320	GPATCH8	Q9UKJ3	1502 aa	Known RBP	41	■■■■■ 4.15
SSBP3-204	ENST00000371320	PELP1	Q8IZL8	1130 aa	Known RBP	41	■■■■■ 4.15
SSBP3-204	ENST00000371320	CAMSAP2	Q08AD1	1489 aa		40.99	■■■■■ 4.15
SSBP3-204	ENST00000371320	KIF14	Q15058	1648 aa		40.97	■■■■■ 4.15
SSBP3-204	ENST00000371320	KCNH8	Q96L42	1107 aa		40.95	■■■■■ 4.15
SSBP3-204	ENST00000371320	ABCA8	O94911	1581 aa		40.94	■■■■■ 4.14
SSBP3-204	ENST00000371320	PLEKHD1	A6NEE1	506 aa		40.9	■■■■■ 4.14
SSBP3-204	ENST00000371320	FOXD1	Q16676	465 aa		40.9	■■■■■ 4.14
SSBP3-204	ENST00000371320	ZNF777	Q9ULD5	760 aa	Predicted RBP	40.89	■■■■■ 4.14
SSBP3-204	ENST00000371320	ATP10B	O94823	1461 aa		40.85	■■■■■ 4.13
SSBP3-204	ENST00000371320	ANKRD30B	Q9BXX2	1392 aa		40.84	■■■■■ 4.13
SSBP3-204	ENST00000371320	NCOA1	Q15788	1441 aa		40.83	■■■■■ 4.13
SSBP3-204	ENST00000371320	ANP32C	O43423	234 aa		40.82	■■■■■ 4.12
SSBP3-204	ENST00000371320	SLC4A1AP	Q9BWU0	796 aa	Known RBP	40.81	■■■■■ 4.12
SSBP3-204	ENST00000371320	L3MBTL2	Q969R5	705 aa		40.79	■■■■■ 4.12
SSBP3-204	ENST00000371320	ADGB	Q8N7X0	1667 aa		40.79	■■■■■ 4.12
SSBP3-204	ENST00000371320	ADGRL2	O95490	1459 aa		40.77	■■■■■ 4.12
SSBP3-204	ENST00000371320	RPRD2	Q5VT52	1461 aa	Known RBP	40.75	■■■■■ 4.11
SSBP3-204	ENST00000371320	CCER2	I3L3R5	266 aa		40.75	■■■■■ 4.11
SSBP3-204	ENST00000371320	CROCC2	H7BZ55	1655 aa		40.74	■■■■■ 4.11
SSBP3-204	ENST00000371320	ABCC10	Q5T3U5	1492 aa		40.74	■■■■■ 4.11
SSBP3-204	ENST00000371320	PTPRG	P23470	1445 aa		40.73	■■■■■ 4.11
SSBP3-204	ENST00000371320	ANKRD30A	Q9BXX3	1397 aa		40.72	■■■■■ 4.11
SSBP3-204	ENST00000371320	HSPA5	P11021	654 aa	Known RBP	40.71	■■■■■ 4.11
SSBP3-204	ENST00000371320	CDC42BPA	Q5VT25	1732 aa		40.69	■■■■■ 4.1
SSBP3-204	ENST00000371320	PZP	P20742	1482 aa		40.68	■■■■■ 4.1
SSBP3-204	ENST00000371320	EIF4G2	P78344	907 aa	Known RBP eCLIP	40.67	■■■■■ 4.1	8e-7	■■■■□ 25.5
SSBP3-204	ENST00000371320	CHD1	O14646	1710 aa		40.62	■■■■■ 4.09
SSBP3-204	ENST00000371320	TEX14	Q8IWB6	1497 aa		40.61	■■■■■ 4.09
SSBP3-204	ENST00000371320	SHANK2	Q9UPX8	1470 aa		40.58	■■■■■ 4.09
SSBP3-204	ENST00000371320	ANKRD50	Q9ULJ7	1429 aa		40.56	■■■■■ 4.08
SSBP3-204	ENST00000371320	WASHC2A	Q641Q2	1341 aa		40.56	■■■■■ 4.08
SSBP3-204	ENST00000371320	C9orf84	Q5VXU9	1444 aa		40.55	■■■■■ 4.08
SSBP3-204	ENST00000371320	KIAA1107	Q9UPP5	1409 aa		40.53	■■■■■ 4.08
SSBP3-204	ENST00000371320	NBPF8	Q3BBV2	869 aa		40.52	■■■■■ 4.08
SSBP3-204	ENST00000371320	TSPY4	P0CV99	314 aa		40.51	■■■■■ 4.07
SSBP3-204	ENST00000371320	TSPY10	P0CW01	314 aa		40.51	■■■■■ 4.07
SSBP3-204	ENST00000371320	SUPT16H	Q9Y5B9	1047 aa	Known RBP	40.48	■■■■■ 4.07
SSBP3-204	ENST00000371320	PKD2	Q13563	968 aa		40.46	■■■■■ 4.07
SSBP3-204	ENST00000371320	SHROOM2	Q13796	1616 aa		40.45	■■■■■ 4.07
SSBP3-204	ENST00000371320	HNRNPM	P52272	730 aa	Known RBP eCLIP	40.43	■■■■■ 4.06	1e-6	■■■■□ 26.1
SSBP3-204	ENST00000371320	ARHGEF5	Q12774	1597 aa		40.42	■■■■■ 4.06
SSBP3-204	ENST00000371320	NUP155	O75694	1391 aa		40.38	■■■■■ 4.05
SSBP3-204	ENST00000371320	MBD5	Q9P267	1494 aa		40.38	■■■■■ 4.05
SSBP3-204	ENST00000371320	KIF15	Q9NS87	1388 aa		40.35	■■■■■ 4.05
SSBP3-204	ENST00000371320	PREX2	Q70Z35	1606 aa		40.34	■■■■■ 4.05
SSBP3-204	ENST00000371320	CCDC7	Q96M83	1385 aa		40.33	■■■■■ 4.05
SSBP3-204	ENST00000371320	SAMD9L	Q8IVG5	1584 aa		40.32	■■■■■ 4.04
SSBP3-204	ENST00000371320	CNTLN	Q9NXG0	1405 aa		40.32	■■■■■ 4.04
SSBP3-204	ENST00000371320	C11orf95	C9JLR9	678 aa	Predicted RBP	40.31	■■■■■ 4.04
SSBP3-204	ENST00000371320	CDC42BPB	Q9Y5S2	1711 aa		40.31	■■■■■ 4.04
SSBP3-204	ENST00000371320	CCDC141	Q6ZP82	1450 aa		40.31	■■■■■ 4.04
SSBP3-204	ENST00000371320	SPATA31E1	Q6ZUB1	1445 aa		40.3	■■■■■ 4.04
SSBP3-204	ENST00000371320	RSPH4A	Q5TD94	716 aa		40.3	■■■■■ 4.04
SSBP3-204	ENST00000371320	KDM5D	Q9BY66	1539 aa		40.28	■■■■■ 4.04
SSBP3-204	ENST00000371320	ERCC6L2	Q5T890	1561 aa		40.26	■■■■■ 4.03
SSBP3-204	ENST00000371320	ABCC2	Q92887	1545 aa		40.25	■■■■■ 4.03
SSBP3-204	ENST00000371320	TTC37	Q6PGP7	1564 aa		40.19	■■■■■ 4.02
SSBP3-204	ENST00000371320	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	40.18	■■■■■ 4.02	2e-8	■■■□□ 17.5
SSBP3-204	ENST00000371320	ARHGAP5	Q13017	1502 aa		40.18	■■■■■ 4.02
SSBP3-204	ENST00000371320	ZNF326	Q5BKZ1	582 aa	Known RBP	40.15	■■■■■ 4.02
SSBP3-204	ENST00000371320	KIF7	Q2M1P5	1343 aa		40.15	■■■■■ 4.02
SSBP3-204	ENST00000371320	SYCP2	Q9BX26	1530 aa		40.14	■■■■■ 4.02
SSBP3-204	ENST00000371320	POLR1A	O95602	1720 aa	Predicted RBP	40.09	■■■■■ 4.01
SSBP3-204	ENST00000371320	CLASP1	Q7Z460	1538 aa		40.08	■■■■■ 4.01
SSBP3-204	ENST00000371320	UHRF1BP1	Q6BDS2	1440 aa		40.07	■■■■■ 4.01
SSBP3-204	ENST00000371320	USP47	Q96K76	1375 aa		40.07	■■■■■ 4
SSBP3-204	ENST00000371320	MAST1	Q9Y2H9	1570 aa		40.06	■■■■■ 4
SSBP3-204	ENST00000371320	ARHGEF12	Q9NZN5	1544 aa		40.06	■■■■■ 4
SSBP3-204	ENST00000371320	PRKRIP1	Q9H875	184 aa	Predicted RBP	40.05	■■■■■ 4
SSBP3-204	ENST00000371320	PLEKHH2	Q8IVE3	1493 aa		40.05	■■■■■ 4
SSBP3-204	ENST00000371320	MYO5C	Q9NQX4	1742 aa		40.04	■■■■■ 4
SSBP3-204	ENST00000371320	FAM135A	Q9P2D6	1515 aa		40.03	■■■■■ 4
SSBP3-204	ENST00000371320	HNRNPU	Q00839	825 aa	Known RBP eCLIP	40	■■■■□ 3.99	3e-6	■□□□□ 10.4
SSBP3-204	ENST00000371320	FKBP8	Q14318	412 aa		40	■■■■□ 3.99
SSBP3-204	ENST00000371320	RALGAPB	Q86X10	1494 aa		39.98	■■■■□ 3.99
SSBP3-204	ENST00000371320	UHRF1BP1L	A0JNW5	1464 aa		39.97	■■■■□ 3.99
SSBP3-204	ENST00000371320	KDM5C	P41229	1560 aa		39.95	■■■■□ 3.99
SSBP3-204	ENST00000371320	ZCCHC11	Q5TAX3	1644 aa	Known RBP	39.95	■■■■□ 3.99
SSBP3-204	ENST00000371320	NEFL	P07196	543 aa		39.95	■■■■□ 3.99
SSBP3-204	ENST00000371320	PLCH2	O75038	1416 aa		39.92	■■■■□ 3.98
SSBP3-204	ENST00000371320	CCDC184	Q52MB2	194 aa		39.92	■■■■□ 3.98
SSBP3-204	ENST00000371320	PLXNC1	O60486	1568 aa		39.91	■■■■□ 3.98
SSBP3-204	ENST00000371320	KDM2A	Q9Y2K7	1162 aa		39.91	■■■■□ 3.98
SSBP3-204	ENST00000371320	UNC13B	O14795	1591 aa		39.9	■■■■□ 3.98
SSBP3-204	ENST00000371320	DCAF11	Q8TEB1	546 aa		39.9	■■■■□ 3.98
SSBP3-204	ENST00000371320	CARD11	Q9BXL7	1154 aa		39.89	■■■■□ 3.98
SSBP3-204	ENST00000371320	BCORL1	Q5H9F3	1711 aa		39.89	■■■■□ 3.98
SSBP3-204	ENST00000371320	ARID4B	Q4LE39	1312 aa	Predicted RBP	39.89	■■■■□ 3.98
SSBP3-204	ENST00000371320	EFCAB2	Q5VUJ9	269 aa		39.87	■■■■□ 3.97
SSBP3-204	ENST00000371320	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	39.85	■■■■□ 3.97
SSBP3-204	ENST00000371320	BCAN	Q96GW7	911 aa		39.84	■■■■□ 3.97

Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms