RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 ZMYM4Q5VZL5 1548 aa30.42■■■□□ 2.46
CKS1B-203ENST00000368439 SCAPERQ9BY12 1400 aa30.41■■■□□ 2.46
CKS1B-203ENST00000368439 ARHGAP5Q13017 1502 aa30.41■■■□□ 2.46
CKS1B-203ENST00000368439 CDC42BPAQ5VT25 1732 aa30.4■■■□□ 2.46
CKS1B-203ENST00000368439 POGZQ7Z3K3 1410 aa30.38■■■□□ 2.45
CKS1B-203ENST00000368439 ARHGEF40Q8TER5 1519 aa30.37■■■□□ 2.45
CKS1B-203ENST00000368439 MAGI2Q86UL8 1455 aa30.31■■■□□ 2.44
CKS1B-203ENST00000368439 VPS8Q8N3P4 1428 aa30.3■■■□□ 2.44
CKS1B-203ENST00000368439 ZFYVE16Q7Z3T8 1539 aa30.29■■■□□ 2.44
CKS1B-203ENST00000368439 GPATCH8Q9UKJ3 1502 aaKnown RBP30.29■■■□□ 2.44
CKS1B-203ENST00000368439 YEATS2Q9ULM3 1422 aa30.29■■■□□ 2.44
CKS1B-203ENST00000368439 MTUS2Q5JR59 1369 aa30.28■■■□□ 2.44
CKS1B-203ENST00000368439 ABCC1P33527 1531 aa30.27■■■□□ 2.44
CKS1B-203ENST00000368439 EHBP1L1Q8N3D4 1523 aa30.27■■■□□ 2.44
CKS1B-203ENST00000368439 KDM5CP41229 1560 aa30.26■■■□□ 2.43
CKS1B-203ENST00000368439 ARHGEF12Q9NZN5 1544 aa30.26■■■□□ 2.43
CKS1B-203ENST00000368439 ZNF518AQ6AHZ1 1483 aa30.25■■■□□ 2.43
CKS1B-203ENST00000368439 SIGLEC1Q9BZZ2 1709 aa30.25■■■□□ 2.43
CKS1B-203ENST00000368439 ITSN2Q9NZM3 1697 aa30.24■■■□□ 2.43
CKS1B-203ENST00000368439 ADAMTSL3P82987 1691 aa30.23■■■□□ 2.43
CKS1B-203ENST00000368439 TIAM1Q13009 1591 aa30.23■■■□□ 2.43
CKS1B-203ENST00000368439 BCORL1Q5H9F3 1711 aa30.22■■■□□ 2.43
CKS1B-203ENST00000368439 SAMD9LQ8IVG5 1584 aa30.21■■■□□ 2.43
CKS1B-203ENST00000368439 AFAP1Q8N556 730 aa30.21■■■□□ 2.43
CKS1B-203ENST00000368439 TRAPPC8Q9Y2L5 1435 aa30.18■■■□□ 2.42
CKS1B-203ENST00000368439 CCNB3Q8WWL7 1395 aa30.17■■■□□ 2.42
CKS1B-203ENST00000368439 HECW2Q9P2P5 1572 aa30.15■■■□□ 2.42
CKS1B-203ENST00000368439 ATP10AO60312 1499 aa30.13■■■□□ 2.41
CKS1B-203ENST00000368439 MLH3Q9UHC1 1453 aa30.12■■■□□ 2.41
CKS1B-203ENST00000368439 SUPT6HQ7KZ85 1726 aaKnown RBP30.12■■■□□ 2.41
CKS1B-203ENST00000368439 ARID4BQ4LE39 1312 aaPredicted RBP30.12■■■□□ 2.41
CKS1B-203ENST00000368439 SYCP2Q9BX26 1530 aa30.12■■■□□ 2.41
CKS1B-203ENST00000368439 CFDP1Q9UEE9 299 aaPredicted RBP30.11■■■□□ 2.41
CKS1B-203ENST00000368439 ZNF777Q9ULD5 760 aaPredicted RBP30.11■■■□□ 2.41
CKS1B-203ENST00000368439 MAP3K1Q13233 1512 aa30.11■■■□□ 2.41
CKS1B-203ENST00000368439 DIP2CQ9Y2E4 1556 aa30.1■■■□□ 2.41
CKS1B-203ENST00000368439 MADDQ8WXG6 1647 aa30.1■■■□□ 2.41
CKS1B-203ENST00000368439 NCOA2Q15596 1464 aa30.09■■■□□ 2.41
CKS1B-203ENST00000368439 C9orf84Q5VXU9 1444 aa30.09■■■□□ 2.41
CKS1B-203ENST00000368439 ABCA6Q8N139 1617 aa30.08■■■□□ 2.41
CKS1B-203ENST00000368439 LRRC9Q6ZRR7 1453 aa30.08■■■□□ 2.41
CKS1B-203ENST00000368439 KIAA1107Q9UPP5 1409 aa30.08■■■□□ 2.41
CKS1B-203ENST00000368439 KIDINS220Q9ULH0 1771 aa30.08■■■□□ 2.41
CKS1B-203ENST00000368439 PLEKHH2Q8IVE3 1493 aa30.06■■■□□ 2.4
CKS1B-203ENST00000368439 PTPRMP28827 1452 aa30.05■■■□□ 2.4
CKS1B-203ENST00000368439 REREQ9P2R6 1566 aa30.04■■■□□ 2.4
CKS1B-203ENST00000368439 HNRNPMP52272 730 aaKnown RBP eCLIP30.04■■■□□ 2.4
CKS1B-203ENST00000368439 ZNF644Q9H582 1327 aaPredicted RBP30■■■□□ 2.39
CKS1B-203ENST00000368439 KANK4Q5T7N3 995 aaPredicted RBP30■■■□□ 2.39
CKS1B-203ENST00000368439 RIMS1Q86UR5 1692 aaKnown RBP30■■■□□ 2.39
CKS1B-203ENST00000368439 MYT1LQ9UL68 1186 aa29.97■■■□□ 2.39
CKS1B-203ENST00000368439 MBD5Q9P267 1494 aa29.97■■■□□ 2.39
CKS1B-203ENST00000368439 INO80Q9ULG1 1556 aaPredicted RBP29.95■■■□□ 2.39
CKS1B-203ENST00000368439 FER1L4A9Z1Z3 1794 aa29.95■■■□□ 2.38
CKS1B-203ENST00000368439 SPAG9O60271 1321 aaKnown RBP29.93■■■□□ 2.38
CKS1B-203ENST00000368439 AGLP35573 1532 aa29.92■■■□□ 2.38
CKS1B-203ENST00000368439 ATP7AQ04656 1500 aa29.92■■■□□ 2.38
CKS1B-203ENST00000368439 MLECQ14165 292 aa29.92■■■□□ 2.38
CKS1B-203ENST00000368439 CAMSAP2Q08AD1 1489 aa29.9■■■□□ 2.38
CKS1B-203ENST00000368439 PLXNC1O60486 1568 aa29.82■■■□□ 2.36
CKS1B-203ENST00000368439 MYOM3Q5VTT5 1437 aa29.81■■■□□ 2.36
CKS1B-203ENST00000368439 ARHGEF5Q12774 1597 aa29.81■■■□□ 2.36
CKS1B-203ENST00000368439 CCDC141Q6ZP82 1450 aa29.8■■■□□ 2.36
CKS1B-203ENST00000368439 RTEL1-TNFRSF6BF6WH68 1400 aa29.8■■■□□ 2.36
CKS1B-203ENST00000368439 ADGBQ8N7X0 1667 aa29.79■■■□□ 2.36
CKS1B-203ENST00000368439 APLP2Q06481 763 aa29.79■■■□□ 2.36
CKS1B-203ENST00000368439 A2MP01023 1474 aa29.78■■■□□ 2.36
CKS1B-203ENST00000368439 MIA2Q96PC5 1412 aa29.78■■■□□ 2.36
CKS1B-203ENST00000368439 RSPH4AQ5TD94 716 aa29.76■■■□□ 2.35
CKS1B-203ENST00000368439 LMTK3Q96Q04 1460 aa29.71■■■□□ 2.35
CKS1B-203ENST00000368439 PLPPR3Q6T4P5 718 aa29.69■■■□□ 2.34
CKS1B-203ENST00000368439 C3P01024 1663 aa29.68■■■□□ 2.34
CKS1B-203ENST00000368439 CEBPAP49715 358 aaPredicted RBP29.67■■■□□ 2.34
CKS1B-203ENST00000368439 MAST1Q9Y2H9 1570 aa29.67■■■□□ 2.34
CKS1B-203ENST00000368439 DHX29Q7Z478 1369 aaKnown RBP29.65■■■□□ 2.34
CKS1B-203ENST00000368439 PTPN23Q9H3S7 1636 aa29.65■■■□□ 2.34
CKS1B-203ENST00000368439 MROH2AA6NES4 1674 aa29.63■■■□□ 2.33
CKS1B-203ENST00000368439 CNTLNQ9NXG0 1405 aa29.62■■■□□ 2.33
CKS1B-203ENST00000368439 TSPY4P0CV99 314 aa29.61■■■□□ 2.33
CKS1B-203ENST00000368439 TSPY10P0CW01 314 aa29.61■■■□□ 2.33
CKS1B-203ENST00000368439 FGD6Q6ZV73 1430 aa29.61■■■□□ 2.33
CKS1B-203ENST00000368439 TCOF1Q13428 1488 aaKnown RBP29.6■■■□□ 2.33
CKS1B-203ENST00000368439 PREX1Q8TCU6 1659 aa29.6■■■□□ 2.33
CKS1B-203ENST00000368439 SETD1BQ9UPS6 1966 aaKnown RBP29.59■■■□□ 2.33
CKS1B-203ENST00000368439 CLTCQ00610 1675 aaKnown RBP29.58■■■□□ 2.33
CKS1B-203ENST00000368439 CROCC2H7BZ55 1655 aa29.57■■■□□ 2.32
CKS1B-203ENST00000368439 ESF1Q9H501 851 aaKnown RBP29.57■■■□□ 2.32
CKS1B-203ENST00000368439 GGT6Q6P531 493 aa29.55■■■□□ 2.32
CKS1B-203ENST00000368439 ABCC5O15440 1437 aa29.54■■■□□ 2.32
CKS1B-203ENST00000368439 DNMT1P26358 1616 aaKnown RBP29.53■■■□□ 2.32
CKS1B-203ENST00000368439 PPP6R1Q9UPN7 881 aa29.52■■■□□ 2.32
CKS1B-203ENST00000368439 ZMYM3Q14202 1370 aa29.52■■■□□ 2.32
CKS1B-203ENST00000368439 SHANK2Q9UPX8 1470 aa29.51■■■□□ 2.31
CKS1B-203ENST00000368439 HSPA2P54652 639 aa29.5■■■□□ 2.31
CKS1B-203ENST00000368439 KIF3BO15066 747 aa29.49■■■□□ 2.31
CKS1B-203ENST00000368439 DAPK1P53355 1430 aa29.48■■■□□ 2.31
CKS1B-203ENST00000368439 EIF2AK4Q9P2K8 1649 aaKnown RBP29.45■■■□□ 2.3
CKS1B-203ENST00000368439 NPATQ14207 1427 aa29.45■■■□□ 2.3
CKS1B-203ENST00000368439 RNF17Q9BXT8 1623 aaKnown RBP29.44■■■□□ 2.3
CKS1B-203ENST00000368439 UHRF1BP1Q6BDS2 1440 aa29.44■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms