RNA–Protein interactions for RNA: ENST00000356183.8

GTF3C1-201, Transcript of general transcription factor IIIC subunit 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GTF3C1, Length 7,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-201ENST00000356183 NUDCQ9Y266 331 aa13.97□□□□□ -0.17
GTF3C1-201ENST00000356183 HSP90B1P14625 803 aaKnown RBP13.96□□□□□ -0.17
GTF3C1-201ENST00000356183 FOXD4L1Q9NU39 408 aa13.96□□□□□ -0.17
GTF3C1-201ENST00000356183 CDCA8Q53HL2 280 aa13.95□□□□□ -0.18
GTF3C1-201ENST00000356183 IPO9Q96P70 1041 aaKnown RBP13.95□□□□□ -0.18
GTF3C1-201ENST00000356183 PATL2C9JE40 543 aaKnown RBP13.94□□□□□ -0.18
GTF3C1-201ENST00000356183 TPM4P67936 248 aa13.94□□□□□ -0.18
GTF3C1-201ENST00000356183 ANO8Q9HCE9 1232 aaPredicted RBP13.94□□□□□ -0.18
GTF3C1-201ENST00000356183 CREBRFQ8IUR6 639 aa13.93□□□□□ -0.18
GTF3C1-201ENST00000356183 SYAP1Q96A49 352 aaPredicted RBP13.93□□□□□ -0.18
GTF3C1-201ENST00000356183 LMOD2Q6P5Q4 547 aa13.91□□□□□ -0.18
GTF3C1-201ENST00000356183 SIN3AQ96ST3 1273 aa13.91□□□□□ -0.18
GTF3C1-201ENST00000356183 CALRP27797 417 aaKnown RBP13.91□□□□□ -0.18
GTF3C1-201ENST00000356183 MFAP1P55081 439 aaKnown RBP13.91□□□□□ -0.18
GTF3C1-201ENST00000356183 ZNF771Q7L3S4 317 aaPredicted RBP13.91□□□□□ -0.18
GTF3C1-201ENST00000356183 KIAA1211Q6ZU35 1233 aa13.9□□□□□ -0.18
GTF3C1-201ENST00000356183 TIMELESSQ9UNS1 1208 aa13.9□□□□□ -0.19
GTF3C1-201ENST00000356183 RSPH6AQ9H0K4 717 aa13.89□□□□□ -0.19
GTF3C1-201ENST00000356183 FOXD4L5Q5VV16 416 aaPredicted RBP13.88□□□□□ -0.19
GTF3C1-201ENST00000356183 NOL8Q76FK4 1167 aaKnown RBP13.88□□□□□ -0.19
GTF3C1-201ENST00000356183 FOXD4L4Q8WXT5 416 aaPredicted RBP13.88□□□□□ -0.19
GTF3C1-201ENST00000356183 FANCIQ9NVI1 1328 aa13.88□□□□□ -0.19
GTF3C1-201ENST00000356183 RB1CC1Q8TDY2 1594 aa13.88□□□□□ -0.19
GTF3C1-201ENST00000356183 TCERG1O14776 1098 aaKnown RBP13.87□□□□□ -0.19
GTF3C1-201ENST00000356183 USP35Q9P2H5 1018 aa13.87□□□□□ -0.19
GTF3C1-201ENST00000356183 CALD1Q05682 793 aaKnown RBP13.86□□□□□ -0.19
GTF3C1-201ENST00000356183 CFAP44Q96MT7 982 aa13.86□□□□□ -0.19
GTF3C1-201ENST00000356183 CEP164Q9UPV0 1460 aa13.86□□□□□ -0.19
GTF3C1-201ENST00000356183 KCNH8Q96L42 1107 aa13.86□□□□□ -0.19
GTF3C1-201ENST00000356183 POGKQ9P215 609 aa13.85□□□□□ -0.19
GTF3C1-201ENST00000356183 HTATSF1O43719 755 aaKnown RBP13.85□□□□□ -0.19
GTF3C1-201ENST00000356183 SOX12O15370 315 aa13.85□□□□□ -0.19
GTF3C1-201ENST00000356183 ITPRIPQ8IWB1 547 aa13.84□□□□□ -0.19
GTF3C1-201ENST00000356183 CCAR2Q8N163 923 aaKnown RBP13.83□□□□□ -0.2
GTF3C1-201ENST00000356183 WRNQ14191 1432 aaPredicted RBP eCLIP13.83□□□□□ -0.2
GTF3C1-201ENST00000356183 FBXO3Q9UK99 471 aa13.82□□□□□ -0.2
GTF3C1-201ENST00000356183 TPM3P06753 285 aa13.8□□□□□ -0.2
GTF3C1-201ENST00000356183 CSPP1Q1MSJ5 1256 aa13.8□□□□□ -0.2
GTF3C1-201ENST00000356183 RCAN3Q9UKA8 241 aa13.8□□□□□ -0.2
GTF3C1-201ENST00000356183 TRIM6-TRIM34B2RNG4 842 aa13.79□□□□□ -0.2
GTF3C1-201ENST00000356183 ZNF592Q92610 1267 aa13.79□□□□□ -0.2
GTF3C1-201ENST00000356183 CCNB3Q8WWL7 1395 aa13.79□□□□□ -0.2
GTF3C1-201ENST00000356183 PHF14O94880 888 aa13.78□□□□□ -0.2
GTF3C1-201ENST00000356183 RWDD1Q9H446 243 aaPredicted RBP13.78□□□□□ -0.2
GTF3C1-201ENST00000356183 RASSF8Q8NHQ8 419 aa13.77□□□□□ -0.2
GTF3C1-201ENST00000356183 TMF1P82094 1093 aa13.77□□□□□ -0.21
GTF3C1-201ENST00000356183 PES1O00541 588 aaKnown RBP13.77□□□□□ -0.21
GTF3C1-201ENST00000356183 CHMP7Q8WUX9 453 aaPredicted RBP13.77□□□□□ -0.21
GTF3C1-201ENST00000356183 MORC1Q86VD1 984 aa13.76□□□□□ -0.21
GTF3C1-201ENST00000356183 SLC4A3P48751 1232 aa13.76□□□□□ -0.21
GTF3C1-201ENST00000356183 RTF1Q92541 710 aaKnown RBP13.76□□□□□ -0.21
GTF3C1-201ENST00000356183 TAF7LQ5H9L4 462 aa13.76□□□□□ -0.21
GTF3C1-201ENST00000356183 FOXD4L6Q3SYB3 417 aaPredicted RBP13.75□□□□□ -0.21
GTF3C1-201ENST00000356183 FOXD4L3Q6VB84 417 aaPredicted RBP13.75□□□□□ -0.21
GTF3C1-201ENST00000356183 GSE1Q14687 1217 aa13.75□□□□□ -0.21
GTF3C1-201ENST00000356183 PMFBP1Q8TBY8 1022 aa13.75□□□□□ -0.21
GTF3C1-201ENST00000356183 FAM13BQ9NYF5 915 aa13.74□□□□□ -0.21
GTF3C1-201ENST00000356183 NACADO15069 1562 aa13.74□□□□□ -0.21
GTF3C1-201ENST00000356183 IPO8O15397 1037 aaKnown RBP13.74□□□□□ -0.21
GTF3C1-201ENST00000356183 CEP89Q96ST8 783 aa13.74□□□□□ -0.21
GTF3C1-201ENST00000356183 DDX11L8A8MPP1 907 aa13.73□□□□□ -0.21
GTF3C1-201ENST00000356183 BCL11BQ9C0K0 894 aaPredicted RBP13.73□□□□□ -0.21
GTF3C1-201ENST00000356183 TPD52L1Q16890 204 aaPredicted RBP13.72□□□□□ -0.21
GTF3C1-201ENST00000356183 DCAF11Q8TEB1 546 aa13.72□□□□□ -0.21
GTF3C1-201ENST00000356183 SAFB2Q14151 953 aaKnown RBP eCLIP13.72□□□□□ -0.21
GTF3C1-201ENST00000356183 SRPK2P78362 688 aaKnown RBP13.71□□□□□ -0.21
GTF3C1-201ENST00000356183 GPS2Q13227 327 aa13.71□□□□□ -0.21
GTF3C1-201ENST00000356183 HSPA5P11021 654 aaKnown RBP13.7□□□□□ -0.22
GTF3C1-201ENST00000356183 CHMP3Q9Y3E7 222 aa13.7□□□□□ -0.22
GTF3C1-201ENST00000356183 ZNF330Q9Y3S2 320 aaPredicted RBP13.7□□□□□ -0.22
GTF3C1-201ENST00000356183 KTN1Q86UP2 1357 aaKnown RBP13.7□□□□□ -0.22
GTF3C1-201ENST00000356183 SETD5Q9C0A6 1442 aa13.7□□□□□ -0.22
GTF3C1-201ENST00000356183 GPATCH3Q96I76 525 aa13.7□□□□□ -0.22
GTF3C1-201ENST00000356183 TEX35Q5T0J7 233 aa13.69□□□□□ -0.22
GTF3C1-201ENST00000356183 BAZ1BQ9UIG0 1483 aaKnown RBP13.69□□□□□ -0.22
GTF3C1-201ENST00000356183 SF3A1Q15459 793 aaKnown RBP13.69□□□□□ -0.22
GTF3C1-201ENST00000356183 GOLGA6L19H0YKK7 550 aa13.69□□□□□ -0.22
GTF3C1-201ENST00000356183 PRKCSHP14314 528 aaPredicted RBP13.69□□□□□ -0.22
GTF3C1-201ENST00000356183 CCDC34Q96HJ3 373 aa13.69□□□□□ -0.22
GTF3C1-201ENST00000356183 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.68□□□□□ -0.22
GTF3C1-201ENST00000356183 WWC1Q8IX03 1113 aa13.68□□□□□ -0.22
GTF3C1-201ENST00000356183 KIF16BQ96L93 1317 aa13.68□□□□□ -0.22
GTF3C1-201ENST00000356183 CFDP1Q9UEE9 299 aaPredicted RBP13.68□□□□□ -0.22
GTF3C1-201ENST00000356183 DDX49Q9Y6V7 483 aaKnown RBP13.68□□□□□ -0.22
GTF3C1-201ENST00000356183 GORABQ5T7V8 394 aa13.68□□□□□ -0.22
GTF3C1-201ENST00000356183 PLEKHD1A6NEE1 506 aa13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 VPS53Q5VIR6 699 aa13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 ST18O60284 1047 aa13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 VPS8Q8N3P4 1428 aa13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 BAZ1AQ9NRL2 1556 aaPredicted RBP13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 H3BQV1 296 aa13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 IFFO2Q5TF58 517 aa13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 CCDC70Q6NSX1 233 aa13.67□□□□□ -0.22
GTF3C1-201ENST00000356183 TSR1Q2NL82 804 aaKnown RBP13.66□□□□□ -0.22
GTF3C1-201ENST00000356183 KIF27Q86VH2 1401 aa13.66□□□□□ -0.22
GTF3C1-201ENST00000356183 SMC4Q9NTJ3 1288 aa13.66□□□□□ -0.22
GTF3C1-201ENST00000356183 CCDC146Q8IYE0 955 aa13.65□□□□□ -0.22
GTF3C1-201ENST00000356183 RRP12Q5JTH9 1297 aaKnown RBP13.65□□□□□ -0.22
GTF3C1-201ENST00000356183 APPP05067 770 aa13.64□□□□□ -0.23
GTF3C1-201ENST00000356183 CLUAP1Q96AJ1 413 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms