RNA–Protein interactions for RNA: ENST00000354291.8

DDX55-202, Transcript of DEAD-box helicase 55, humanhuman

TSL 5

Gene DDX55, Length 1,004 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-202ENST00000354291 SCAPERQ9BY12 1400 aa26.83■■□□□ 1.89
DDX55-202ENST00000354291 CFAP74Q9C0B2 1584 aa26.83■■□□□ 1.89
DDX55-202ENST00000354291 FER1L4A9Z1Z3 1794 aa26.81■■□□□ 1.88
DDX55-202ENST00000354291 HECW1Q76N89 1606 aa26.8■■□□□ 1.88
DDX55-202ENST00000354291 TTC37Q6PGP7 1564 aa26.79■■□□□ 1.88
DDX55-202ENST00000354291 ATP10AO60312 1499 aa26.77■■□□□ 1.88
DDX55-202ENST00000354291 ARHGEF12Q9NZN5 1544 aa26.74■■□□□ 1.87
DDX55-202ENST00000354291 MYT1LQ9UL68 1186 aa26.73■■□□□ 1.87
DDX55-202ENST00000354291 PLCH2O75038 1416 aa26.73■■□□□ 1.87
DDX55-202ENST00000354291 EFCAB2Q5VUJ9 269 aa26.72■■□□□ 1.87
DDX55-202ENST00000354291 PREX1Q8TCU6 1659 aa26.72■■□□□ 1.87
DDX55-202ENST00000354291 C9orf84Q5VXU9 1444 aa26.72■■□□□ 1.87
DDX55-202ENST00000354291 ATP1B4Q9UN42 357 aaPredicted RBP26.71■■□□□ 1.87
DDX55-202ENST00000354291 UHRF1BP1Q6BDS2 1440 aa26.71■■□□□ 1.87
DDX55-202ENST00000354291 STRCQ7RTU9 1775 aa26.69■■□□□ 1.86
DDX55-202ENST00000354291 SPATA31D1Q6ZQQ2 1576 aa26.67■■□□□ 1.86
DDX55-202ENST00000354291 AFAP1Q8N556 730 aa26.66■■□□□ 1.86
DDX55-202ENST00000354291 CDK13Q14004 1512 aaKnown RBP26.64■■□□□ 1.85
DDX55-202ENST00000354291 ESF1Q9H501 851 aaKnown RBP26.62■■□□□ 1.85
DDX55-202ENST00000354291 PTPRTO14522 1441 aa26.62■■□□□ 1.85
DDX55-202ENST00000354291 SETD1BQ9UPS6 1966 aaKnown RBP26.62■■□□□ 1.85
DDX55-202ENST00000354291 CDK11AQ9UQ88 783 aaPredicted RBP26.56■■□□□ 1.84
DDX55-202ENST00000354291 ZNF518AQ6AHZ1 1483 aa26.54■■□□□ 1.84
DDX55-202ENST00000354291 LTBP4Q8N2S1 1624 aa26.5■■□□□ 1.83
DDX55-202ENST00000354291 TRAPPC8Q9Y2L5 1435 aa26.49■■□□□ 1.83
DDX55-202ENST00000354291 EHMT2Q96KQ7 1210 aa26.48■■□□□ 1.83
DDX55-202ENST00000354291 UBAP1LF5GYI3 381 aa26.47■■□□□ 1.83
DDX55-202ENST00000354291 ARHGAP5Q13017 1502 aa26.47■■□□□ 1.83
DDX55-202ENST00000354291 MYO5CQ9NQX4 1742 aa26.46■■□□□ 1.83
DDX55-202ENST00000354291 EEA1Q15075 1411 aa26.45■■□□□ 1.82
DDX55-202ENST00000354291 IQSEC2Q5JU85 1478 aa26.43■■□□□ 1.82
DDX55-202ENST00000354291 NCOA1Q15788 1441 aa26.43■■□□□ 1.82
DDX55-202ENST00000354291 C3P01024 1663 aa26.43■■□□□ 1.82
DDX55-202ENST00000354291 NCKAP5LQ9HCH0 1330 aa26.42■■□□□ 1.82
DDX55-202ENST00000354291 DIP2CQ9Y2E4 1556 aa26.42■■□□□ 1.82
DDX55-202ENST00000354291 KDM5CP41229 1560 aa26.41■■□□□ 1.82
DDX55-202ENST00000354291 ZNF335Q9H4Z2 1342 aaPredicted RBP26.39■■□□□ 1.82
DDX55-202ENST00000354291 KIF14Q15058 1648 aa26.39■■□□□ 1.82
DDX55-202ENST00000354291 UBTFP17480 764 aaKnown RBP26.39■■□□□ 1.82
DDX55-202ENST00000354291 TROQ12816 1431 aaPredicted RBP26.38■■□□□ 1.81
DDX55-202ENST00000354291 FMN1Q68DA7 1419 aa26.38■■□□□ 1.81
DDX55-202ENST00000354291 MLH3Q9UHC1 1453 aa26.37■■□□□ 1.81
DDX55-202ENST00000354291 CLIP1P30622 1438 aa26.35■■□□□ 1.81
DDX55-202ENST00000354291 REREQ9P2R6 1566 aa26.35■■□□□ 1.81
DDX55-202ENST00000354291 CNTLNQ9NXG0 1405 aa26.34■■□□□ 1.81
DDX55-202ENST00000354291 ABCA6Q8N139 1617 aa26.34■■□□□ 1.81
DDX55-202ENST00000354291 AGLP35573 1532 aa26.34■■□□□ 1.81
DDX55-202ENST00000354291 CAMSAP1Q5T5Y3 1602 aa26.33■■□□□ 1.81
DDX55-202ENST00000354291 ZMYM3Q14202 1370 aa26.31■■□□□ 1.8
DDX55-202ENST00000354291 SCAF1Q9H7N4 1312 aaKnown RBP26.28■■□□□ 1.8
DDX55-202ENST00000354291 NPATQ14207 1427 aa26.26■■□□□ 1.79
DDX55-202ENST00000354291 PKD2Q13563 968 aa26.26■■□□□ 1.79
DDX55-202ENST00000354291 ZNF777Q9ULD5 760 aaPredicted RBP26.25■■□□□ 1.79
DDX55-202ENST00000354291 ARHGAP35Q9NRY4 1499 aa26.24■■□□□ 1.79
DDX55-202ENST00000354291 CDC42BPBQ9Y5S2 1711 aa26.23■■□□□ 1.79
DDX55-202ENST00000354291 PIP4K2BP78356 416 aa26.23■■□□□ 1.79
DDX55-202ENST00000354291 HSPA1LP34931 641 aa26.21■■□□□ 1.79
DDX55-202ENST00000354291 ABCC1P33527 1531 aa26.2■■□□□ 1.79
DDX55-202ENST00000354291 PPP6R1Q9UPN7 881 aa26.2■■□□□ 1.78
DDX55-202ENST00000354291 SPAG9O60271 1321 aaKnown RBP26.18■■□□□ 1.78
DDX55-202ENST00000354291 KIDINS220Q9ULH0 1771 aa26.18■■□□□ 1.78
DDX55-202ENST00000354291 GGT6Q6P531 493 aa26.17■■□□□ 1.78
DDX55-202ENST00000354291 HNRNPMP52272 730 aaKnown RBP eCLIP26.16■■□□□ 1.78
DDX55-202ENST00000354291 ITSN2Q9NZM3 1697 aa26.14■■□□□ 1.78
DDX55-202ENST00000354291 TOM1O60784 492 aa26.13■■□□□ 1.77
DDX55-202ENST00000354291 PREX2Q70Z35 1606 aa26.13■■□□□ 1.77
DDX55-202ENST00000354291 PLA2R1Q13018 1463 aa26.12■■□□□ 1.77
DDX55-202ENST00000354291 MROH2AA6NES4 1674 aa26.11■■□□□ 1.77
DDX55-202ENST00000354291 PTPRKQ15262 1439 aa26.1■■□□□ 1.77
DDX55-202ENST00000354291 TCOF1Q13428 1488 aaKnown RBP26.1■■□□□ 1.77
DDX55-202ENST00000354291 SAMD9LQ8IVG5 1584 aa26.09■■□□□ 1.77
DDX55-202ENST00000354291 PHF23Q9BUL5 403 aaPredicted RBP26.09■■□□□ 1.77
DDX55-202ENST00000354291 LRRIQ1Q96JM4 1722 aa26.08■■□□□ 1.77
DDX55-202ENST00000354291 SUPT6HQ7KZ85 1726 aaKnown RBP26.08■■□□□ 1.76
DDX55-202ENST00000354291 MED1Q15648 1581 aaPredicted RBP26.06■■□□□ 1.76
DDX55-202ENST00000354291 CEP170BQ9Y4F5 1589 aaPredicted RBP26.06■■□□□ 1.76
DDX55-202ENST00000354291 CLTCQ00610 1675 aaKnown RBP26.06■■□□□ 1.76
DDX55-202ENST00000354291 MYO3AQ8NEV4 1616 aa26.04■■□□□ 1.76
DDX55-202ENST00000354291 A2MP01023 1474 aa26.02■■□□□ 1.76
DDX55-202ENST00000354291 CCDC18Q5T9S5 1454 aa26.01■■□□□ 1.75
DDX55-202ENST00000354291 SYCP2Q9BX26 1530 aa26.01■■□□□ 1.75
DDX55-202ENST00000354291 CDC42BPAQ5VT25 1732 aa26■■□□□ 1.75
DDX55-202ENST00000354291 ZNF142P52746 1687 aaPredicted RBP26■■□□□ 1.75
DDX55-202ENST00000354291 CASKIN1Q8WXD9 1431 aa26■■□□□ 1.75
DDX55-202ENST00000354291 SENP3Q9H4L4 574 aaPredicted RBP26■■□□□ 1.75
DDX55-202ENST00000354291 CFDP1Q9UEE9 299 aaPredicted RBP26■■□□□ 1.75
DDX55-202ENST00000354291 ATP7AQ04656 1500 aa25.97■■□□□ 1.75
DDX55-202ENST00000354291 GPATCH8Q9UKJ3 1502 aaKnown RBP25.97■■□□□ 1.75
DDX55-202ENST00000354291 A2ML1A8K2U0 1454 aa25.96■■□□□ 1.75
DDX55-202ENST00000354291 FBXO31Q5XUX0 539 aaPredicted RBP25.95■■□□□ 1.74
DDX55-202ENST00000354291 SHANK2Q9UPX8 1470 aa25.95■■□□□ 1.74
DDX55-202ENST00000354291 ANKLE2Q86XL3 938 aa25.93■■□□□ 1.74
DDX55-202ENST00000354291 KIAA1107Q9UPP5 1409 aa25.93■■□□□ 1.74
DDX55-202ENST00000354291 CPS1P31327 1500 aa25.93■■□□□ 1.74
DDX55-202ENST00000354291 PLXNC1O60486 1568 aa25.91■■□□□ 1.74
DDX55-202ENST00000354291 DNMT1P26358 1616 aaKnown RBP25.91■■□□□ 1.74
DDX55-202ENST00000354291 CCNB3Q8WWL7 1395 aa25.89■■□□□ 1.74
DDX55-202ENST00000354291 TNRQ92752 1358 aa25.89■■□□□ 1.74
DDX55-202ENST00000354291 PLEKHH2Q8IVE3 1493 aa25.89■■□□□ 1.73
DDX55-202ENST00000354291 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.86■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms