RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 ZNF644Q9H582 1327 aaPredicted RBP30.9■■■□□ 2.54
SHMT1-202ENST00000352886 ROCK1Q13464 1354 aa30.9■■■□□ 2.54
SHMT1-202ENST00000352886 NUP160Q12769 1436 aa30.89■■■□□ 2.54
SHMT1-202ENST00000352886 MPHOSPH9Q99550 1183 aa30.89■■■□□ 2.54
SHMT1-202ENST00000352886 TROQ12816 1431 aaPredicted RBP30.89■■■□□ 2.54
SHMT1-202ENST00000352886 PRG4Q92954 1404 aaPredicted RBP30.89■■■□□ 2.54
SHMT1-202ENST00000352886 CARMIL2Q6F5E8 1435 aa30.86■■■□□ 2.53
SHMT1-202ENST00000352886 JPH4Q96JJ6 628 aa30.85■■■□□ 2.53
SHMT1-202ENST00000352886 ITSN2Q9NZM3 1697 aa30.83■■■□□ 2.53
SHMT1-202ENST00000352886 ADCY10Q96PN6 1610 aa30.8■■■□□ 2.52
SHMT1-202ENST00000352886 KIF14Q15058 1648 aa30.8■■■□□ 2.52
SHMT1-202ENST00000352886 CAMSAP2Q08AD1 1489 aa30.78■■■□□ 2.52
SHMT1-202ENST00000352886 FOXD1Q16676 465 aa30.77■■■□□ 2.52
SHMT1-202ENST00000352886 CFDP1Q9UEE9 299 aaPredicted RBP30.76■■■□□ 2.52
SHMT1-202ENST00000352886 GPATCH8Q9UKJ3 1502 aaKnown RBP30.75■■■□□ 2.51
SHMT1-202ENST00000352886 ANP32CO43423 234 aa30.75■■■□□ 2.51
SHMT1-202ENST00000352886 ADGBQ8N7X0 1667 aa30.7■■■□□ 2.51
SHMT1-202ENST00000352886 CCER2I3L3R5 266 aa30.69■■■□□ 2.5
SHMT1-202ENST00000352886 ABCA8O94911 1581 aa30.69■■■□□ 2.5
SHMT1-202ENST00000352886 ANKRD30BQ9BXX2 1392 aa30.68■■■□□ 2.5
SHMT1-202ENST00000352886 L3MBTL2Q969R5 705 aa30.67■■■□□ 2.5
SHMT1-202ENST00000352886 ZNF777Q9ULD5 760 aaPredicted RBP30.67■■■□□ 2.5
SHMT1-202ENST00000352886 CROCC2H7BZ55 1655 aa30.66■■■□□ 2.5
SHMT1-202ENST00000352886 RPRD2Q5VT52 1461 aaKnown RBP30.65■■■□□ 2.5
SHMT1-202ENST00000352886 SLC4A1APQ9BWU0 796 aaKnown RBP30.65■■■□□ 2.5
SHMT1-202ENST00000352886 SUPT16HQ9Y5B9 1047 aaKnown RBP30.64■■■□□ 2.5
SHMT1-202ENST00000352886 NCOA1Q15788 1441 aa30.64■■■□□ 2.5
SHMT1-202ENST00000352886 HSPA5P11021 654 aaKnown RBP30.64■■■□□ 2.49
SHMT1-202ENST00000352886 CDC42BPAQ5VT25 1732 aa30.62■■■□□ 2.49
SHMT1-202ENST00000352886 PLEKHD1A6NEE1 506 aa30.61■■■□□ 2.49
SHMT1-202ENST00000352886 ATP10BO94823 1461 aa30.6■■■□□ 2.49
SHMT1-202ENST00000352886 ADGRL2O95490 1459 aa30.6■■■□□ 2.49
SHMT1-202ENST00000352886 EIF4G2P78344 907 aaKnown RBP eCLIP30.58■■■□□ 2.49
SHMT1-202ENST00000352886 PZPP20742 1482 aa30.58■■■□□ 2.49
SHMT1-202ENST00000352886 TEX14Q8IWB6 1497 aa30.57■■■□□ 2.48
SHMT1-202ENST00000352886 WASHC2AQ641Q2 1341 aa30.56■■■□□ 2.48
SHMT1-202ENST00000352886 ABCC10Q5T3U5 1492 aa30.55■■■□□ 2.48
SHMT1-202ENST00000352886 ANKRD30AQ9BXX3 1397 aa30.52■■■□□ 2.48
SHMT1-202ENST00000352886 NBPF8Q3BBV2 869 aa30.48■■■□□ 2.47
SHMT1-202ENST00000352886 PTPRGP23470 1445 aa30.46■■■□□ 2.47
SHMT1-202ENST00000352886 CHD1O14646 1710 aa30.45■■■□□ 2.47
SHMT1-202ENST00000352886 ANKRD50Q9ULJ7 1429 aa30.45■■■□□ 2.47
SHMT1-202ENST00000352886 SHANK2Q9UPX8 1470 aa30.44■■■□□ 2.46
SHMT1-202ENST00000352886 KIAA1107Q9UPP5 1409 aa30.44■■■□□ 2.46
SHMT1-202ENST00000352886 C9orf84Q5VXU9 1444 aa30.42■■■□□ 2.46
SHMT1-202ENST00000352886 PKD2Q13563 968 aa30.38■■■□□ 2.45
SHMT1-202ENST00000352886 CNTLNQ9NXG0 1405 aa30.38■■■□□ 2.45
SHMT1-202ENST00000352886 C11orf95C9JLR9 678 aaPredicted RBP30.37■■■□□ 2.45
SHMT1-202ENST00000352886 CCDC7Q96M83 1385 aa30.36■■■□□ 2.45
SHMT1-202ENST00000352886 TSPY4P0CV99 314 aa30.34■■■□□ 2.45
SHMT1-202ENST00000352886 TSPY10P0CW01 314 aa30.34■■■□□ 2.45
SHMT1-202ENST00000352886 SPATA31E1Q6ZUB1 1445 aa30.33■■■□□ 2.45
SHMT1-202ENST00000352886 ARHGEF5Q12774 1597 aa30.32■■■□□ 2.44
SHMT1-202ENST00000352886 POLR1AO95602 1720 aaPredicted RBP30.32■■■□□ 2.44
SHMT1-202ENST00000352886 MBD5Q9P267 1494 aa30.32■■■□□ 2.44
SHMT1-202ENST00000352886 CDC42BPBQ9Y5S2 1711 aa30.32■■■□□ 2.44
SHMT1-202ENST00000352886 HNRNPMP52272 730 aaKnown RBP eCLIP30.31■■■□□ 2.44
SHMT1-202ENST00000352886 NUP155O75694 1391 aa30.3■■■□□ 2.44
SHMT1-202ENST00000352886 PREX2Q70Z35 1606 aa30.3■■■□□ 2.44
SHMT1-202ENST00000352886 SHROOM2Q13796 1616 aa30.29■■■□□ 2.44
SHMT1-202ENST00000352886 SAMD9LQ8IVG5 1584 aa30.28■■■□□ 2.44
SHMT1-202ENST00000352886 KIF15Q9NS87 1388 aa30.27■■■□□ 2.44
SHMT1-202ENST00000352886 KDM5DQ9BY66 1539 aa30.26■■■□□ 2.43
SHMT1-202ENST00000352886 FKBP8Q14318 412 aa30.24■■■□□ 2.43
SHMT1-202ENST00000352886 CCDC141Q6ZP82 1450 aa30.23■■■□□ 2.43
SHMT1-202ENST00000352886 KIF7Q2M1P5 1343 aa30.22■■■□□ 2.43
SHMT1-202ENST00000352886 ZNF326Q5BKZ1 582 aaKnown RBP30.2■■■□□ 2.43
SHMT1-202ENST00000352886 HNRNPUQ00839 825 aaKnown RBP eCLIP30.18■■■□□ 2.42
SHMT1-202ENST00000352886 TTC37Q6PGP7 1564 aa30.18■■■□□ 2.42
SHMT1-202ENST00000352886 ERCC6L2Q5T890 1561 aa30.18■■■□□ 2.42
SHMT1-202ENST00000352886 BCANQ96GW7 911 aa30.17■■■□□ 2.42
SHMT1-202ENST00000352886 PRKRIP1Q9H875 184 aaPredicted RBP30.17■■■□□ 2.42
SHMT1-202ENST00000352886 NEFLP07196 543 aa30.15■■■□□ 2.42
SHMT1-202ENST00000352886 USP47Q96K76 1375 aa30.14■■■□□ 2.42
SHMT1-202ENST00000352886 RSPH4AQ5TD94 716 aa30.14■■■□□ 2.42
SHMT1-202ENST00000352886 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.14■■■□□ 2.42
SHMT1-202ENST00000352886 SYCP2Q9BX26 1530 aa30.14■■■□□ 2.42
SHMT1-202ENST00000352886 ARHGAP5Q13017 1502 aa30.13■■■□□ 2.41
SHMT1-202ENST00000352886 ABCC2Q92887 1545 aa30.13■■■□□ 2.41
SHMT1-202ENST00000352886 CCDC184Q52MB2 194 aa30.12■■■□□ 2.41
SHMT1-202ENST00000352886 KDM5CP41229 1560 aa30.11■■■□□ 2.41
SHMT1-202ENST00000352886 UHRF1BP1Q6BDS2 1440 aa30.11■■■□□ 2.41
SHMT1-202ENST00000352886 ARHGEF12Q9NZN5 1544 aa30.11■■■□□ 2.41
SHMT1-202ENST00000352886 BCORL1Q5H9F3 1711 aa30.11■■■□□ 2.41
SHMT1-202ENST00000352886 MYO5CQ9NQX4 1742 aa30.09■■■□□ 2.41
SHMT1-202ENST00000352886 FAM135AQ9P2D6 1515 aa30.08■■■□□ 2.41
SHMT1-202ENST00000352886 RALGAPBQ86X10 1494 aa30.07■■■□□ 2.4
SHMT1-202ENST00000352886 MAST1Q9Y2H9 1570 aa30.06■■■□□ 2.4
SHMT1-202ENST00000352886 MRS2Q9HD23 443 aa30.02■■■□□ 2.4
SHMT1-202ENST00000352886 KDM2AQ9Y2K7 1162 aa30■■■□□ 2.39
SHMT1-202ENST00000352886 UNC13BO14795 1591 aa29.99■■■□□ 2.39
SHMT1-202ENST00000352886 FAM9BQ8IZU0 186 aa29.98■■■□□ 2.39
SHMT1-202ENST00000352886 POLR3GLQ9BT43 218 aa29.98■■■□□ 2.39
SHMT1-202ENST00000352886 CARD11Q9BXL7 1154 aa29.98■■■□□ 2.39
SHMT1-202ENST00000352886 PLEKHH2Q8IVE3 1493 aa29.97■■■□□ 2.39
SHMT1-202ENST00000352886 DCAF11Q8TEB1 546 aa29.97■■■□□ 2.39
SHMT1-202ENST00000352886 TSHZ2Q9NRE2 1034 aa29.97■■■□□ 2.39
SHMT1-202ENST00000352886 ZCCHC11Q5TAX3 1644 aaKnown RBP29.97■■■□□ 2.39
SHMT1-202ENST00000352886 PLXNC1O60486 1568 aa29.96■■■□□ 2.39
SHMT1-202ENST00000352886 CLASP1Q7Z460 1538 aa29.96■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms