RNA–Protein interactions for RNA: ENST00000345851.7

TRIM3-201, Transcript of tripartite motif containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM3, Length 2,879 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-201ENST00000345851 NUP160Q12769 1436 aa29.52■■■□□ 2.32
TRIM3-201ENST00000345851 B4GALNT3Q6L9W6 998 aa29.51■■■□□ 2.31
TRIM3-201ENST00000345851 MYT1LQ9UL68 1186 aa29.5■■■□□ 2.31
TRIM3-201ENST00000345851 NBR1Q14596 966 aa29.5■■■□□ 2.31
TRIM3-201ENST00000345851 NUP153P49790 1475 aaKnown RBP29.49■■■□□ 2.31
TRIM3-201ENST00000345851 RRP7BPQ9NSQ0 103 aa29.43■■■□□ 2.3
TRIM3-201ENST00000345851 RAPGEF6Q8TEU7 1601 aa29.42■■■□□ 2.3
TRIM3-201ENST00000345851 CARMIL2Q6F5E8 1435 aa29.41■■■□□ 2.3
TRIM3-201ENST00000345851 CCDC184Q52MB2 194 aa29.38■■■□□ 2.29
TRIM3-201ENST00000345851 PRG4Q92954 1404 aaPredicted RBP29.38■■■□□ 2.29
TRIM3-201ENST00000345851 ZNF644Q9H582 1327 aaPredicted RBP29.38■■■□□ 2.29
TRIM3-201ENST00000345851 ERICH6BQ5W0A0 696 aa29.38■■■□□ 2.29
TRIM3-201ENST00000345851 NOP58Q9Y2X3 529 aaKnown RBP29.38■■■□□ 2.29
TRIM3-201ENST00000345851 PTPN23Q9H3S7 1636 aa29.37■■■□□ 2.29
TRIM3-201ENST00000345851 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.37■■■□□ 2.29
TRIM3-201ENST00000345851 PAK3O75914 559 aaPredicted RBP29.37■■■□□ 2.29
TRIM3-201ENST00000345851 ARHGEF11O15085 1522 aa29.36■■■□□ 2.29
TRIM3-201ENST00000345851 CHD1O14646 1710 aa29.33■■■□□ 2.29
TRIM3-201ENST00000345851 FAM9BQ8IZU0 186 aa29.33■■■□□ 2.29
TRIM3-201ENST00000345851 WASHC2AQ641Q2 1341 aa29.3■■■□□ 2.28
TRIM3-201ENST00000345851 ZNF777Q9ULD5 760 aaPredicted RBP29.29■■■□□ 2.28
TRIM3-201ENST00000345851 HSPA5P11021 654 aaKnown RBP29.25■■■□□ 2.27
TRIM3-201ENST00000345851 NAIPQ13075 1403 aa29.24■■■□□ 2.27
TRIM3-201ENST00000345851 HFM1A2PYH4 1435 aa29.22■■■□□ 2.27
TRIM3-201ENST00000345851 ANO8Q9HCE9 1232 aaPredicted RBP29.21■■■□□ 2.27
TRIM3-201ENST00000345851 PTPRGP23470 1445 aa29.2■■■□□ 2.27
TRIM3-201ENST00000345851 MRS2Q9HD23 443 aa29.19■■■□□ 2.26
TRIM3-201ENST00000345851 TROQ12816 1431 aaPredicted RBP29.18■■■□□ 2.26
TRIM3-201ENST00000345851 CFDP1Q9UEE9 299 aaPredicted RBP29.18■■■□□ 2.26
TRIM3-201ENST00000345851 PLEKHD1A6NEE1 506 aa29.17■■■□□ 2.26
TRIM3-201ENST00000345851 KIF14Q15058 1648 aa29.17■■■□□ 2.26
TRIM3-201ENST00000345851 TCOF1Q13428 1488 aaKnown RBP29.16■■■□□ 2.26
TRIM3-201ENST00000345851 ERCC6L2Q5T890 1561 aa29.16■■■□□ 2.26
TRIM3-201ENST00000345851 UACAQ9BZF9 1416 aa29.15■■■□□ 2.26
TRIM3-201ENST00000345851 ATP10BO94823 1461 aa29.15■■■□□ 2.26
TRIM3-201ENST00000345851 MIA2Q96PC5 1412 aa29.14■■■□□ 2.26
TRIM3-201ENST00000345851 ABCA8O94911 1581 aa29.11■■■□□ 2.25
TRIM3-201ENST00000345851 ZBED9Q6R2W3 1325 aa29.11■■■□□ 2.25
TRIM3-201ENST00000345851 PRKRIP1Q9H875 184 aaPredicted RBP29.11■■■□□ 2.25
TRIM3-201ENST00000345851 RTL5Q5HYW3 569 aaPredicted RBP29.1■■■□□ 2.25
TRIM3-201ENST00000345851 KDM5BQ9UGL1 1544 aa29.1■■■□□ 2.25
TRIM3-201ENST00000345851 KDM6BO15054 1643 aa29.09■■■□□ 2.25
TRIM3-201ENST00000345851 EIF4G2P78344 907 aaKnown RBP eCLIP29.09■■■□□ 2.25
TRIM3-201ENST00000345851 CNTLNQ9NXG0 1405 aa29.08■■■□□ 2.25
TRIM3-201ENST00000345851 ANP32AP39687 249 aaKnown RBP29.08■■■□□ 2.25
TRIM3-201ENST00000345851 FOXD1Q16676 465 aa29.06■■■□□ 2.24
TRIM3-201ENST00000345851 GPATCH8Q9UKJ3 1502 aaKnown RBP29.05■■■□□ 2.24
TRIM3-201ENST00000345851 ABCC5O15440 1437 aa29.05■■■□□ 2.24
TRIM3-201ENST00000345851 DAPK1P53355 1430 aa29.05■■■□□ 2.24
TRIM3-201ENST00000345851 C11orf95C9JLR9 678 aaPredicted RBP29.05■■■□□ 2.24
TRIM3-201ENST00000345851 IPO9Q96P70 1041 aaKnown RBP29.03■■■□□ 2.24
TRIM3-201ENST00000345851 CNGB1Q14028 1251 aaPredicted RBP29.03■■■□□ 2.24
TRIM3-201ENST00000345851 ZBTB47Q9UFB7 747 aaPredicted RBP29.02■■■□□ 2.24
TRIM3-201ENST00000345851 SALL2Q9Y467 1007 aaPredicted RBP29.02■■■□□ 2.24
TRIM3-201ENST00000345851 CCDC136Q96JN2 1154 aa29.01■■■□□ 2.23
TRIM3-201ENST00000345851 AKNAQ7Z591 1439 aa29.01■■■□□ 2.23
TRIM3-201ENST00000345851 SENP3-EIF4A1A0A087X0R7 540 aa28.99■■■□□ 2.23
TRIM3-201ENST00000345851 CAMSAP2Q08AD1 1489 aa28.98■■■□□ 2.23
TRIM3-201ENST00000345851 IL27Q8NEV9 243 aa28.98■■■□□ 2.23
TRIM3-201ENST00000345851 RTN4Q9NQC3 1192 aaKnown RBP28.97■■■□□ 2.23
TRIM3-201ENST00000345851 CCDC7Q96M83 1385 aa28.93■■■□□ 2.22
TRIM3-201ENST00000345851 DNMT1P26358 1616 aaKnown RBP28.92■■■□□ 2.22
TRIM3-201ENST00000345851 HNRNPMP52272 730 aaKnown RBP eCLIP28.91■■■□□ 2.22
TRIM3-201ENST00000345851 SHROOM2Q13796 1616 aa28.91■■■□□ 2.22
TRIM3-201ENST00000345851 MPHOSPH9Q99550 1183 aa28.91■■■□□ 2.22
TRIM3-201ENST00000345851 GCC2Q8IWJ2 1684 aa28.89■■■□□ 2.22
TRIM3-201ENST00000345851 DENND4BO75064 1496 aaPredicted RBP28.88■■■□□ 2.21
TRIM3-201ENST00000345851 L3MBTL2Q969R5 705 aa28.87■■■□□ 2.21
TRIM3-201ENST00000345851 ADCY10Q96PN6 1610 aa28.87■■■□□ 2.21
TRIM3-201ENST00000345851 NPM2Q86SE8 214 aaKnown RBP28.87■■■□□ 2.21
TRIM3-201ENST00000345851 ABCC10Q5T3U5 1492 aa28.87■■■□□ 2.21
TRIM3-201ENST00000345851 CDC42BPAQ5VT25 1732 aa28.86■■■□□ 2.21
TRIM3-201ENST00000345851 ITSN2Q9NZM3 1697 aa28.85■■■□□ 2.21
TRIM3-201ENST00000345851 NCOA1Q15788 1441 aa28.85■■■□□ 2.21
TRIM3-201ENST00000345851 NUDCQ9Y266 331 aa28.82■■■□□ 2.2
TRIM3-201ENST00000345851 SMG6Q86US8 1419 aaKnown RBP28.81■■■□□ 2.2
TRIM3-201ENST00000345851 CLASP1Q7Z460 1538 aa28.81■■■□□ 2.2
TRIM3-201ENST00000345851 SLC4A1APQ9BWU0 796 aaKnown RBP28.8■■■□□ 2.2
TRIM3-201ENST00000345851 ROCK1Q13464 1354 aa28.8■■■□□ 2.2
TRIM3-201ENST00000345851 LAS1LQ9Y4W2 734 aaKnown RBP28.8■■■□□ 2.2
TRIM3-201ENST00000345851 KIF7Q2M1P5 1343 aa28.78■■■□□ 2.2
TRIM3-201ENST00000345851 POLR3GLQ9BT43 218 aa28.76■■■□□ 2.19
TRIM3-201ENST00000345851 ABCC2Q92887 1545 aa28.74■■■□□ 2.19
TRIM3-201ENST00000345851 NBPF8Q3BBV2 869 aa28.74■■■□□ 2.19
TRIM3-201ENST00000345851 TSPY4P0CV99 314 aa28.74■■■□□ 2.19
TRIM3-201ENST00000345851 TSPY10P0CW01 314 aa28.74■■■□□ 2.19
TRIM3-201ENST00000345851 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.73■■■□□ 2.19
TRIM3-201ENST00000345851 NEFMP07197 916 aa28.72■■■□□ 2.19
TRIM3-201ENST00000345851 RNF123Q5XPI4 1314 aa28.71■■■□□ 2.19
TRIM3-201ENST00000345851 ANKRD30AQ9BXX3 1397 aa28.69■■■□□ 2.18
TRIM3-201ENST00000345851 TTC37Q6PGP7 1564 aa28.69■■■□□ 2.18
TRIM3-201ENST00000345851 C9orf84Q5VXU9 1444 aa28.68■■■□□ 2.18
TRIM3-201ENST00000345851 CDC42BPBQ9Y5S2 1711 aa28.67■■■□□ 2.18
TRIM3-201ENST00000345851 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.65■■■□□ 2.18
TRIM3-201ENST00000345851 ARHGAP5Q13017 1502 aa28.64■■■□□ 2.17
TRIM3-201ENST00000345851 ANKRD50Q9ULJ7 1429 aa28.63■■■□□ 2.17
TRIM3-201ENST00000345851 SAMD9LQ8IVG5 1584 aa28.63■■■□□ 2.17
TRIM3-201ENST00000345851 CROCC2H7BZ55 1655 aa28.63■■■□□ 2.17
TRIM3-201ENST00000345851 ZCCHC11Q5TAX3 1644 aaKnown RBP28.61■■■□□ 2.17
TRIM3-201ENST00000345851 MBD5Q9P267 1494 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms