RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 IQGAP2Q13576 1575 aa4.31□□□□□ -1.72
CSMD3-202ENST00000339701 CARMIL2Q6F5E8 1435 aa4.31□□□□□ -1.72
CSMD3-202ENST00000339701 AKNAQ7Z591 1439 aa4.31□□□□□ -1.72
CSMD3-202ENST00000339701 GOLGA6L22H0YM25 854 aa4.31□□□□□ -1.72
CSMD3-202ENST00000339701 KANK1Q14678 1352 aa4.31□□□□□ -1.72
CSMD3-202ENST00000339701 IL27Q8NEV9 243 aa4.31□□□□□ -1.72
CSMD3-202ENST00000339701 MSH5O43196 834 aa4.31□□□□□ -1.72
CSMD3-202ENST00000339701 BICRAQ9NZM4 1560 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 SNAPC4Q5SXM2 1469 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 PTPN23Q9H3S7 1636 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 SETD5Q9C0A6 1442 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 IFT140Q96RY7 1462 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 ARAP3Q8WWN8 1544 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 CUX2O14529 1486 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 EVA1CP58658 441 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 HRCP23327 699 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 PCGF6Q9BYE7 350 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 RSPH4AQ5TD94 716 aa4.3□□□□□ -1.72
CSMD3-202ENST00000339701 LAS1LQ9Y4W2 734 aaKnown RBP4.29□□□□□ -1.72
CSMD3-202ENST00000339701 EIF2AK4Q9P2K8 1649 aaKnown RBP4.29□□□□□ -1.72
CSMD3-202ENST00000339701 CACNA1FO60840 1977 aa4.29□□□□□ -1.72
CSMD3-202ENST00000339701 HMGB1P1B2RPK0 211 aaPredicted RBP4.29□□□□□ -1.72
CSMD3-202ENST00000339701 PHLDB1Q86UU1 1377 aa4.29□□□□□ -1.72
CSMD3-202ENST00000339701 P3H3Q8IVL6 736 aa4.29□□□□□ -1.72
CSMD3-202ENST00000339701 CHMP4CQ96CF2 233 aa4.29□□□□□ -1.72
CSMD3-202ENST00000339701 ANP32CO43423 234 aa4.29□□□□□ -1.72
CSMD3-202ENST00000339701 SRPK2P78362 688 aaKnown RBP4.29□□□□□ -1.72
CSMD3-202ENST00000339701 MAP3K9P80192 1104 aa4.29□□□□□ -1.72
CSMD3-202ENST00000339701 ZC3H13Q5T200 1668 aaKnown RBP4.29□□□□□ -1.72
CSMD3-202ENST00000339701 MS4A1P11836 297 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 DDRGK1Q96HY6 314 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 ADCY10Q96PN6 1610 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 TNIKQ9UKE5 1360 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 GOLGA6L6A8MZA4 724 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 FAM69CQ0P6D2 419 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 BECN1Q14457 450 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 WIZO95785 1651 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 WDHD1O75717 1129 aaPredicted RBP4.28□□□□□ -1.72
CSMD3-202ENST00000339701 DAPK1P53355 1430 aa4.28□□□□□ -1.72
CSMD3-202ENST00000339701 PPARGC1BQ86YN6 1023 aaKnown RBP4.28□□□□□ -1.73
CSMD3-202ENST00000339701 KTN1Q86UP2 1357 aaKnown RBP4.27□□□□□ -1.73
CSMD3-202ENST00000339701 DNAJC5BQ9UF47 199 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 MYO5CQ9NQX4 1742 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 ATF3P18847 181 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 WDR62O43379 1518 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 PIP4K2BP78356 416 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 CCDC34Q96HJ3 373 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 UACAQ9BZF9 1416 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 SHROOM2Q13796 1616 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 ABCA10Q8WWZ4 1543 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 MRC2Q9UBG0 1479 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 POGZQ7Z3K3 1410 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 TEX14Q8IWB6 1497 aa4.27□□□□□ -1.73
CSMD3-202ENST00000339701 CDCA8Q53HL2 280 aa4.26□□□□□ -1.73
CSMD3-202ENST00000339701 KIF14Q15058 1648 aa4.26□□□□□ -1.73
CSMD3-202ENST00000339701 CWC22Q9HCG8 908 aaKnown RBP4.26□□□□□ -1.73
CSMD3-202ENST00000339701 SOGA1O94964 1423 aa4.26□□□□□ -1.73
CSMD3-202ENST00000339701 ABCA5Q8WWZ7 1642 aa4.25□□□□□ -1.73
CSMD3-202ENST00000339701 NEURL4Q96JN8 1562 aa4.25□□□□□ -1.73
CSMD3-202ENST00000339701 WWC1Q8IX03 1113 aa4.25□□□□□ -1.73
CSMD3-202ENST00000339701 CSB-PGBD3P0DP91 1061 aa4.25□□□□□ -1.73
CSMD3-202ENST00000339701 POGKQ9P215 609 aa4.25□□□□□ -1.73
CSMD3-202ENST00000339701 HDAC5Q9UQL6 1122 aa4.25□□□□□ -1.73
CSMD3-202ENST00000339701 HSP90AA1P07900 732 aaKnown RBP4.25□□□□□ -1.73
CSMD3-202ENST00000339701 CALRP27797 417 aaKnown RBP4.25□□□□□ -1.73
CSMD3-202ENST00000339701 CARMIL1Q5VZK9 1371 aa4.25□□□□□ -1.73
CSMD3-202ENST00000339701 PNNQ9H307 717 aaKnown RBP4.24□□□□□ -1.73
CSMD3-202ENST00000339701 BCL11AQ9H165 835 aa4.24□□□□□ -1.73
CSMD3-202ENST00000339701 PPM1GO15355 546 aaPredicted RBP4.24□□□□□ -1.73
CSMD3-202ENST00000339701 LAMC1P11047 1609 aa4.24□□□□□ -1.73
CSMD3-202ENST00000339701 NGEFQ8N5V2 710 aa4.24□□□□□ -1.73
CSMD3-202ENST00000339701 FKBP8Q14318 412 aa4.24□□□□□ -1.73
CSMD3-202ENST00000339701 DIEXFQ68CQ4 756 aaKnown RBP4.24□□□□□ -1.73
CSMD3-202ENST00000339701 NUTM2BA6NNL0 878 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 NUTM2EB1AL46 878 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 NUTM2DQ5VT03 806 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 NUTM2AQ8IVF1 878 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 CFAP65Q6ZU64 1925 aaKnown RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 CHAF1AQ13111 956 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 PAK3O75914 559 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 CNGB1Q14028 1251 aaPredicted RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 TDRD9Q8NDG6 1382 aaKnown RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 KDM5AP29375 1690 aaKnown RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 TOM1O60784 492 aa4.23□□□□□ -1.73
CSMD3-202ENST00000339701 ZNF710Q8N1W2 664 aa4.23□□□□□ -1.73
CSMD3-202ENST00000339701 CANXP27824 592 aaKnown RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 BEGAINQ9BUH8 593 aa4.23□□□□□ -1.73
CSMD3-202ENST00000339701 ZRSR1Q15695 479 aaKnown RBP4.23□□□□□ -1.73
CSMD3-202ENST00000339701 CCDC141Q6ZP82 1450 aa4.23□□□□□ -1.73
CSMD3-202ENST00000339701 SHANK2Q9UPX8 1470 aa4.23□□□□□ -1.73
CSMD3-202ENST00000339701 GRIN2BQ13224 1484 aa4.22□□□□□ -1.73
CSMD3-202ENST00000339701 FANCD2Q9BXW9 1451 aa4.22□□□□□ -1.73
CSMD3-202ENST00000339701 RAPGEF2Q9Y4G8 1499 aa4.22□□□□□ -1.73
CSMD3-202ENST00000339701 CAMSAP2Q08AD1 1489 aa4.22□□□□□ -1.73
CSMD3-202ENST00000339701 DHX8Q14562 1220 aaKnown RBP4.22□□□□□ -1.73
CSMD3-202ENST00000339701 VPS8Q8N3P4 1428 aa4.22□□□□□ -1.73
CSMD3-202ENST00000339701 MIA2Q96PC5 1412 aa4.22□□□□□ -1.73
CSMD3-202ENST00000339701 KIAA0586Q9BVV6 1533 aa4.22□□□□□ -1.73
CSMD3-202ENST00000339701 INO80Q9ULG1 1556 aaPredicted RBP4.22□□□□□ -1.73
CSMD3-202ENST00000339701 ROCK2O75116 1388 aaKnown RBP4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms