RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 GZF1Q9H116 711 aaPredicted RBP12.69□□□□□ -0.38
PTCHD4-201ENST00000339488 CANXP27824 592 aaKnown RBP12.69□□□□□ -0.38
PTCHD4-201ENST00000339488 CADPSQ9ULU8 1353 aa12.69□□□□□ -0.38
PTCHD4-201ENST00000339488 GOLGA3Q08378 1498 aa12.68□□□□□ -0.38
PTCHD4-201ENST00000339488 XRCC6P12956 609 aaKnown RBP eCLIP12.68□□□□□ -0.389e-7■■□□□ 13
PTCHD4-201ENST00000339488 MAPK8IP2Q13387 824 aaPredicted RBP12.65□□□□□ -0.38
PTCHD4-201ENST00000339488 FAM13BQ9NYF5 915 aa12.64□□□□□ -0.39
PTCHD4-201ENST00000339488 NUDCQ9Y266 331 aa12.64□□□□□ -0.39
PTCHD4-201ENST00000339488 L1TD1Q5T7N2 865 aaKnown RBP12.63□□□□□ -0.39
PTCHD4-201ENST00000339488 SLKQ9H2G2 1235 aaPredicted RBP12.63□□□□□ -0.39
PTCHD4-201ENST00000339488 CENPJQ9HC77 1338 aaPredicted RBP12.62□□□□□ -0.39
PTCHD4-201ENST00000339488 KIAA1211Q6ZU35 1233 aa12.62□□□□□ -0.39
PTCHD4-201ENST00000339488 LAMC3Q9Y6N6 1575 aa12.61□□□□□ -0.39
PTCHD4-201ENST00000339488 ZNF830Q96NB3 372 aaPredicted RBP12.61□□□□□ -0.39
PTCHD4-201ENST00000339488 SMG6Q86US8 1419 aaKnown RBP12.6□□□□□ -0.39
PTCHD4-201ENST00000339488 ESPNB1AK53 854 aa12.59□□□□□ -0.39
PTCHD4-201ENST00000339488 DHX37Q8IY37 1157 aaKnown RBP12.59□□□□□ -0.39
PTCHD4-201ENST00000339488 IPO4Q8TEX9 1081 aaKnown RBP12.59□□□□□ -0.39
PTCHD4-201ENST00000339488 PRDM2Q13029 1718 aa12.59□□□□□ -0.39
PTCHD4-201ENST00000339488 GOLGA6L3A6NEY3 463 aa12.59□□□□□ -0.39
PTCHD4-201ENST00000339488 RNF123Q5XPI4 1314 aa12.58□□□□□ -0.39
PTCHD4-201ENST00000339488 FANCD2Q9BXW9 1451 aa12.58□□□□□ -0.4
PTCHD4-201ENST00000339488 TPM2P07951 284 aa12.58□□□□□ -0.4
PTCHD4-201ENST00000339488 RIPK4P57078 832 aa12.58□□□□□ -0.4
PTCHD4-201ENST00000339488 PRKRIP1Q9H875 184 aaPredicted RBP12.58□□□□□ -0.4
PTCHD4-201ENST00000339488 KIF21AQ7Z4S6 1674 aa12.57□□□□□ -0.4
PTCHD4-201ENST00000339488 MS4A1P11836 297 aa12.57□□□□□ -0.4
PTCHD4-201ENST00000339488 ZBTB22O15209 634 aa12.56□□□□□ -0.4
PTCHD4-201ENST00000339488 CCNB3Q8WWL7 1395 aa12.55□□□□□ -0.4
PTCHD4-201ENST00000339488 TMEM51Q9NW97 253 aa12.54□□□□□ -0.4
PTCHD4-201ENST00000339488 PLIN1O60240 522 aa12.54□□□□□ -0.4
PTCHD4-201ENST00000339488 CEP164Q9UPV0 1460 aa12.54□□□□□ -0.4
PTCHD4-201ENST00000339488 RRP1P56182 461 aaKnown RBP12.53□□□□□ -0.4
PTCHD4-201ENST00000339488 CUX2O14529 1486 aa12.53□□□□□ -0.4
PTCHD4-201ENST00000339488 ANP32BQ92688 251 aaKnown RBP12.53□□□□□ -0.4
PTCHD4-201ENST00000339488 ZFP91Q96JP5 570 aaPredicted RBP12.53□□□□□ -0.4
PTCHD4-201ENST00000339488 TONSLQ96HA7 1378 aa12.53□□□□□ -0.4
PTCHD4-201ENST00000339488 HSPA5P11021 654 aaKnown RBP12.52□□□□□ -0.4
PTCHD4-201ENST00000339488 KIF21BO75037 1637 aa12.52□□□□□ -0.4
PTCHD4-201ENST00000339488 SYNJ1O43426 1573 aa12.52□□□□□ -0.4
PTCHD4-201ENST00000339488 PPP4R3BQ5MIZ7 849 aa12.52□□□□□ -0.41
PTCHD4-201ENST00000339488 SPRYD3Q8NCJ5 442 aa12.52□□□□□ -0.41
PTCHD4-201ENST00000339488 RRBP1Q9P2E9 1410 aaKnown RBP12.52□□□□□ -0.41
PTCHD4-201ENST00000339488 SMAP1Q8IYB5 467 aaPredicted RBP12.51□□□□□ -0.41
PTCHD4-201ENST00000339488 PDS5BQ9NTI5 1447 aa12.51□□□□□ -0.41
PTCHD4-201ENST00000339488 RSPH4AQ5TD94 716 aa12.5□□□□□ -0.41
PTCHD4-201ENST00000339488 CUX1P39880 1505 aa12.5□□□□□ -0.41
PTCHD4-201ENST00000339488 FSD2A1L4K1 749 aa12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 E9PSI1 815 aa12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 TRIM44Q96DX7 344 aaPredicted RBP12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 CHMP4AQ9BY43 222 aa12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 MYH16Q9H6N6 1097 aa12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 ERCC6Q03468 1493 aa12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 C8orf34Q49A92 452 aa12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 R3HCC1Q9Y3T6 440 aaKnown RBP12.48□□□□□ -0.41
PTCHD4-201ENST00000339488 SETD5Q9C0A6 1442 aa12.47□□□□□ -0.41
PTCHD4-201ENST00000339488 URB2Q14146 1524 aaKnown RBP12.47□□□□□ -0.41
PTCHD4-201ENST00000339488 CNTLNQ9NXG0 1405 aa12.47□□□□□ -0.41
PTCHD4-201ENST00000339488 FAM50AQ14320 339 aaKnown RBP12.47□□□□□ -0.41
PTCHD4-201ENST00000339488 DMTNQ08495 405 aa12.46□□□□□ -0.42
PTCHD4-201ENST00000339488 ZBTB7CA1YPR0 619 aa12.45□□□□□ -0.42
PTCHD4-201ENST00000339488 CERS3Q8IU89 383 aa12.44□□□□□ -0.42
PTCHD4-201ENST00000339488 CRBNQ96SW2 442 aa12.44□□□□□ -0.42
PTCHD4-201ENST00000339488 POLR3GLQ9BT43 218 aa12.44□□□□□ -0.42
PTCHD4-201ENST00000339488 RAPGEF2Q9Y4G8 1499 aa12.44□□□□□ -0.42
PTCHD4-201ENST00000339488 TOP2BQ02880 1626 aa12.44□□□□□ -0.42
PTCHD4-201ENST00000339488 IGSF3O75054 1194 aa12.43□□□□□ -0.42
PTCHD4-201ENST00000339488 ZSCAN20P17040 1043 aaPredicted RBP12.43□□□□□ -0.42
PTCHD4-201ENST00000339488 GRPEL1Q9HAV7 217 aa12.43□□□□□ -0.42
PTCHD4-201ENST00000339488 SECISBP2LQ93073 1101 aaKnown RBP12.43□□□□□ -0.42
PTCHD4-201ENST00000339488 BIVM-ERCC5R4GMW8 1640 aa12.43□□□□□ -0.42
PTCHD4-201ENST00000339488 FAM161AQ3B820 660 aa12.42□□□□□ -0.42
PTCHD4-201ENST00000339488 TMC1Q8TDI8 760 aa12.42□□□□□ -0.42
PTCHD4-201ENST00000339488 RCAN3Q9UKA8 241 aa12.42□□□□□ -0.42
PTCHD4-201ENST00000339488 TOPBP1Q92547 1522 aa12.42□□□□□ -0.42
PTCHD4-201ENST00000339488 JARID2Q92833 1246 aaPredicted RBP12.42□□□□□ -0.42
PTCHD4-201ENST00000339488 FTSJ3Q8IY81 847 aaKnown RBP12.41□□□□□ -0.42
PTCHD4-201ENST00000339488 THOC2Q8NI27 1593 aaKnown RBP12.41□□□□□ -0.42
PTCHD4-201ENST00000339488 UQCRHLA0A096LP55 91 aa12.41□□□□□ -0.42
PTCHD4-201ENST00000339488 UQCRHP07919 91 aa12.41□□□□□ -0.42
PTCHD4-201ENST00000339488 MRC2Q9UBG0 1479 aa12.4□□□□□ -0.42
PTCHD4-201ENST00000339488 MRE11P49959 708 aa12.4□□□□□ -0.42
PTCHD4-201ENST00000339488 DNMBPQ6XZF7 1577 aa12.4□□□□□ -0.42
PTCHD4-201ENST00000339488 CBX1P83916 185 aa12.39□□□□□ -0.43
PTCHD4-201ENST00000339488 C20orf194Q5TEA3 1177 aa12.39□□□□□ -0.43
PTCHD4-201ENST00000339488 FGD5Q6ZNL6 1462 aa12.39□□□□□ -0.43
PTCHD4-201ENST00000339488 SEC24BO95487 1268 aa12.38□□□□□ -0.43
PTCHD4-201ENST00000339488 CGNQ9P2M7 1197 aaKnown RBP12.38□□□□□ -0.43
PTCHD4-201ENST00000339488 ZBTB9Q96C00 473 aa12.37□□□□□ -0.43
PTCHD4-201ENST00000339488 TRAK2O60296 914 aa12.37□□□□□ -0.43
PTCHD4-201ENST00000339488 GAS2L3Q86XJ1 694 aa12.37□□□□□ -0.43
PTCHD4-201ENST00000339488 OFD1O75665 1012 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 UTP14CQ5TAP6 766 aaKnown RBP12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 TSC1Q92574 1164 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 XPCQ01831 940 aaPredicted RBP12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 AEBP1Q8IUX7 1158 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 POLA1P09884 1462 aaPredicted RBP12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 CDK11BP21127 795 aaKnown RBP12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 MCM4P33991 863 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 CDCA7LQ96GN5 454 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms