RNA–Protein interactions for RNA: ENST00000338602.6

SLC28A1-202, Transcript of solute carrier family 28 member 1, humanhuman

TSL 1 (best) BASIC

Gene SLC28A1, Length 1,360 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1-202ENST00000338602 DENND4BO75064 1496 aaPredicted RBP17.86■□□□□ 0.45
SLC28A1-202ENST00000338602 APLP2Q06481 763 aa17.85■□□□□ 0.45
SLC28A1-202ENST00000338602 ARHGAP5Q13017 1502 aa17.85■□□□□ 0.45
SLC28A1-202ENST00000338602 LMTK3Q96Q04 1460 aa17.83■□□□□ 0.44
SLC28A1-202ENST00000338602 SCAPERQ9BY12 1400 aa17.82■□□□□ 0.44
SLC28A1-202ENST00000338602 EHBP1L1Q8N3D4 1523 aa17.82■□□□□ 0.44
SLC28A1-202ENST00000338602 CCNB3Q8WWL7 1395 aa17.81■□□□□ 0.44
SLC28A1-202ENST00000338602 CFDP1Q9UEE9 299 aaPredicted RBP17.79■□□□□ 0.44
SLC28A1-202ENST00000338602 TIAM1Q13009 1591 aa17.78■□□□□ 0.44
SLC28A1-202ENST00000338602 PREX2Q70Z35 1606 aa17.78■□□□□ 0.44
SLC28A1-202ENST00000338602 ZNF777Q9ULD5 760 aaPredicted RBP17.78■□□□□ 0.44
SLC28A1-202ENST00000338602 MAP3K1Q13233 1512 aa17.77■□□□□ 0.44
SLC28A1-202ENST00000338602 GPATCH8Q9UKJ3 1502 aaKnown RBP17.76■□□□□ 0.43
SLC28A1-202ENST00000338602 POGZQ7Z3K3 1410 aa17.75■□□□□ 0.43
SLC28A1-202ENST00000338602 CDC42BPBQ9Y5S2 1711 aa17.75■□□□□ 0.43
SLC28A1-202ENST00000338602 RICTORQ6R327 1708 aa17.74■□□□□ 0.43
SLC28A1-202ENST00000338602 MYT1LQ9UL68 1186 aa17.74■□□□□ 0.43
SLC28A1-202ENST00000338602 MAGI2Q86UL8 1455 aa17.74■□□□□ 0.43
SLC28A1-202ENST00000338602 FRMPD1Q5SYB0 1578 aa17.74■□□□□ 0.43
SLC28A1-202ENST00000338602 CDC42BPAQ5VT25 1732 aa17.74■□□□□ 0.43
SLC28A1-202ENST00000338602 ZNF518AQ6AHZ1 1483 aa17.73■□□□□ 0.43
SLC28A1-202ENST00000338602 LRRC9Q6ZRR7 1453 aa17.73■□□□□ 0.43
SLC28A1-202ENST00000338602 SUPT6HQ7KZ85 1726 aaKnown RBP17.72■□□□□ 0.43
SLC28A1-202ENST00000338602 ZMYM4Q5VZL5 1548 aa17.71■□□□□ 0.43
SLC28A1-202ENST00000338602 NCOA2Q15596 1464 aa17.71■□□□□ 0.42
SLC28A1-202ENST00000338602 PLEKHH2Q8IVE3 1493 aa17.71■□□□□ 0.42
SLC28A1-202ENST00000338602 ARID4BQ4LE39 1312 aaPredicted RBP17.7■□□□□ 0.42
SLC28A1-202ENST00000338602 SOCS7O14512 581 aa17.7■□□□□ 0.42
SLC28A1-202ENST00000338602 AFAP1Q8N556 730 aa17.7■□□□□ 0.42
SLC28A1-202ENST00000338602 ITSN2Q9NZM3 1697 aa17.69■□□□□ 0.42
SLC28A1-202ENST00000338602 ABCC1P33527 1531 aa17.68■□□□□ 0.42
SLC28A1-202ENST00000338602 ZFYVE16Q7Z3T8 1539 aa17.68■□□□□ 0.42
SLC28A1-202ENST00000338602 KANK4Q5T7N3 995 aaPredicted RBP17.68■□□□□ 0.42
SLC28A1-202ENST00000338602 KIAA1107Q9UPP5 1409 aa17.67■□□□□ 0.42
SLC28A1-202ENST00000338602 ARHGEF40Q8TER5 1519 aa17.67■□□□□ 0.42
SLC28A1-202ENST00000338602 HNRNPMP52272 730 aaKnown RBP eCLIP17.66■□□□□ 0.42
SLC28A1-202ENST00000338602 SAMD9LQ8IVG5 1584 aa17.65■□□□□ 0.42
SLC28A1-202ENST00000338602 TRAPPC8Q9Y2L5 1435 aa17.65■□□□□ 0.42
SLC28A1-202ENST00000338602 KDM5CP41229 1560 aa17.64■□□□□ 0.41
SLC28A1-202ENST00000338602 YEATS2Q9ULM3 1422 aa17.64■□□□□ 0.41
SLC28A1-202ENST00000338602 ARHGEF12Q9NZN5 1544 aa17.64■□□□□ 0.41
SLC28A1-202ENST00000338602 ATP10AO60312 1499 aa17.63■□□□□ 0.41
SLC28A1-202ENST00000338602 MLH3Q9UHC1 1453 aa17.63■□□□□ 0.41
SLC28A1-202ENST00000338602 SPAG9O60271 1321 aaKnown RBP17.62■□□□□ 0.41
SLC28A1-202ENST00000338602 SYCP2Q9BX26 1530 aa17.62■□□□□ 0.41
SLC28A1-202ENST00000338602 RSPH4AQ5TD94 716 aa17.62■□□□□ 0.41
SLC28A1-202ENST00000338602 ILDR2Q71H61 639 aa17.62■□□□□ 0.41
SLC28A1-202ENST00000338602 ZNF644Q9H582 1327 aaPredicted RBP17.6■□□□□ 0.41
SLC28A1-202ENST00000338602 C9orf84Q5VXU9 1444 aa17.6■□□□□ 0.41
SLC28A1-202ENST00000338602 DISP3Q9P2K9 1392 aa17.58■□□□□ 0.4
SLC28A1-202ENST00000338602 MYOM3Q5VTT5 1437 aa17.57■□□□□ 0.4
SLC28A1-202ENST00000338602 MIA2Q96PC5 1412 aa17.57■□□□□ 0.4
SLC28A1-202ENST00000338602 CAMSAP2Q08AD1 1489 aa17.56■□□□□ 0.4
SLC28A1-202ENST00000338602 TSPY4P0CV99 314 aa17.54■□□□□ 0.4
SLC28A1-202ENST00000338602 TSPY10P0CW01 314 aa17.54■□□□□ 0.4
SLC28A1-202ENST00000338602 MBD5Q9P267 1494 aa17.54■□□□□ 0.4
SLC28A1-202ENST00000338602 MLECQ14165 292 aa17.53■□□□□ 0.4
SLC28A1-202ENST00000338602 DIP2CQ9Y2E4 1556 aa17.53■□□□□ 0.4
SLC28A1-202ENST00000338602 BCORL1Q5H9F3 1711 aa17.53■□□□□ 0.4
SLC28A1-202ENST00000338602 CCDC141Q6ZP82 1450 aa17.52■□□□□ 0.4
SLC28A1-202ENST00000338602 ATP7AQ04656 1500 aa17.51■□□□□ 0.39
SLC28A1-202ENST00000338602 REREQ9P2R6 1566 aa17.51■□□□□ 0.39
SLC28A1-202ENST00000338602 KIDINS220Q9ULH0 1771 aa17.51■□□□□ 0.39
SLC28A1-202ENST00000338602 RTEL1-TNFRSF6BF6WH68 1400 aa17.51■□□□□ 0.39
SLC28A1-202ENST00000338602 ABCA6Q8N139 1617 aa17.5■□□□□ 0.39
SLC28A1-202ENST00000338602 ADAMTSL3P82987 1691 aa17.5■□□□□ 0.39
SLC28A1-202ENST00000338602 ESF1Q9H501 851 aaKnown RBP17.49■□□□□ 0.39
SLC28A1-202ENST00000338602 ARHGEF5Q12774 1597 aa17.48■□□□□ 0.39
SLC28A1-202ENST00000338602 INO80Q9ULG1 1556 aaPredicted RBP17.48■□□□□ 0.39
SLC28A1-202ENST00000338602 AGLP35573 1532 aa17.47■□□□□ 0.39
SLC28A1-202ENST00000338602 A2MP01023 1474 aa17.46■□□□□ 0.39
SLC28A1-202ENST00000338602 PTPRMP28827 1452 aa17.46■□□□□ 0.39
SLC28A1-202ENST00000338602 FGD6Q6ZV73 1430 aa17.46■□□□□ 0.39
SLC28A1-202ENST00000338602 MADDQ8WXG6 1647 aa17.45■□□□□ 0.38
SLC28A1-202ENST00000338602 SIGLEC1Q9BZZ2 1709 aa17.44■□□□□ 0.38
SLC28A1-202ENST00000338602 CERKQ8TCT0 537 aa17.44■□□□□ 0.38
SLC28A1-202ENST00000338602 PTPN23Q9H3S7 1636 aa17.44■□□□□ 0.38
SLC28A1-202ENST00000338602 ADGBQ8N7X0 1667 aa17.42■□□□□ 0.38
SLC28A1-202ENST00000338602 RIMS1Q86UR5 1692 aaKnown RBP17.41■□□□□ 0.38
SLC28A1-202ENST00000338602 DHX29Q7Z478 1369 aaKnown RBP17.41■□□□□ 0.38
SLC28A1-202ENST00000338602 FAM50AQ14320 339 aaKnown RBP17.4■□□□□ 0.38
SLC28A1-202ENST00000338602 TCOF1Q13428 1488 aaKnown RBP17.4■□□□□ 0.38
SLC28A1-202ENST00000338602 FER1L4A9Z1Z3 1794 aa17.4■□□□□ 0.38
SLC28A1-202ENST00000338602 PLPPR3Q6T4P5 718 aa17.4■□□□□ 0.38
SLC28A1-202ENST00000338602 GGT6Q6P531 493 aa17.39■□□□□ 0.37
SLC28A1-202ENST00000338602 PPARGC1BQ86YN6 1023 aaKnown RBP17.39■□□□□ 0.37
SLC28A1-202ENST00000338602 PPP6R1Q9UPN7 881 aa17.39■□□□□ 0.37
SLC28A1-202ENST00000338602 MAST1Q9Y2H9 1570 aa17.39■□□□□ 0.37
SLC28A1-202ENST00000338602 PLXNC1O60486 1568 aa17.38■□□□□ 0.37
SLC28A1-202ENST00000338602 CNTLNQ9NXG0 1405 aa17.37■□□□□ 0.37
SLC28A1-202ENST00000338602 ABCC5O15440 1437 aa17.36■□□□□ 0.37
SLC28A1-202ENST00000338602 KIF3BO15066 747 aa17.36■□□□□ 0.37
SLC28A1-202ENST00000338602 DAPK1P53355 1430 aa17.36■□□□□ 0.37
SLC28A1-202ENST00000338602 SHANK2Q9UPX8 1470 aa17.35■□□□□ 0.37
SLC28A1-202ENST00000338602 DNMT1P26358 1616 aaKnown RBP17.33■□□□□ 0.36
SLC28A1-202ENST00000338602 ANKRD30AQ9BXX3 1397 aa17.33■□□□□ 0.36
SLC28A1-202ENST00000338602 CEBPAP49715 358 aaPredicted RBP17.31■□□□□ 0.36
SLC28A1-202ENST00000338602 RRP7BPQ9NSQ0 103 aa17.31■□□□□ 0.36
SLC28A1-202ENST00000338602 CHIC2Q9UKJ5 165 aa17.31■□□□□ 0.36
SLC28A1-202ENST00000338602 KIF15Q9NS87 1388 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms