RNA–Protein interactions for RNA: ENST00000338602.6

SLC28A1-202, Transcript of solute carrier family 28 member 1, humanhuman

TSL 1 (best) BASIC

Gene SLC28A1, Length 1,360 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1-202ENST00000338602 NISCHQ9Y2I1 1504 aa27.31■■□□□ 1.96
SLC28A1-202ENST00000338602 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
SLC28A1-202ENST00000338602 ABCC9O60706 1549 aa23.79■■□□□ 1.4
SLC28A1-202ENST00000338602 DNAJC5BQ9UF47 199 aa23.01■■□□□ 1.27
SLC28A1-202ENST00000338602 DCAF8L2P0C7V8 631 aa22.94■■□□□ 1.26
SLC28A1-202ENST00000338602 RB1CC1Q8TDY2 1594 aa22.91■■□□□ 1.26
SLC28A1-202ENST00000338602 NACADO15069 1562 aa22.87■■□□□ 1.25
SLC28A1-202ENST00000338602 ZCCHC6Q5VYS8 1495 aaKnown RBP22.72■■□□□ 1.23
SLC28A1-202ENST00000338602 MYO15BQ96JP2 1530 aa22.72■■□□□ 1.23
SLC28A1-202ENST00000338602 DCAF1Q9Y4B6 1507 aa22.61■■□□□ 1.21
SLC28A1-202ENST00000338602 PABPN1Q86U42 306 aaKnown RBP eCLIP22.26■■□□□ 1.15
SLC28A1-202ENST00000338602 UNC13AQ9UPW8 1703 aa22.26■■□□□ 1.15
SLC28A1-202ENST00000338602 SCRIBQ14160 1630 aa22.14■■□□□ 1.13
SLC28A1-202ENST00000338602 BICRAQ9NZM4 1560 aa22.12■■□□□ 1.13
SLC28A1-202ENST00000338602 SHROOM4Q9ULL8 1493 aa21.99■■□□□ 1.11
SLC28A1-202ENST00000338602 DNAJC5Q9H3Z4 198 aa21.81■■□□□ 1.08
SLC28A1-202ENST00000338602 EIF4G1Q04637 1599 aaKnown RBP21.59■■□□□ 1.05
SLC28A1-202ENST00000338602 CC2D2AQ9P2K1 1620 aa21.5■■□□□ 1.03
SLC28A1-202ENST00000338602 CECR2Q9BXF3 1484 aa21.41■■□□□ 1.02
SLC28A1-202ENST00000338602 BAZ1AQ9NRL2 1556 aaPredicted RBP21.19■□□□□ 0.98
SLC28A1-202ENST00000338602 SMARCA4P51532 1647 aa21.17■□□□□ 0.98
SLC28A1-202ENST00000338602 SMARCA2P51531 1590 aa21.1■□□□□ 0.97
SLC28A1-202ENST00000338602 NCAPD3P42695 1498 aa21.1■□□□□ 0.97
SLC28A1-202ENST00000338602 ATAD2BQ9ULI0 1458 aa21.09■□□□□ 0.97
SLC28A1-202ENST00000338602 MROH2BQ7Z745 1585 aa21.02■□□□□ 0.96
SLC28A1-202ENST00000338602 HMGXB3Q12766 1538 aa20.97■□□□□ 0.95
SLC28A1-202ENST00000338602 PEG3Q9GZU2 1588 aa20.97■□□□□ 0.95
SLC28A1-202ENST00000338602 BAZ1BQ9UIG0 1483 aaKnown RBP20.94■□□□□ 0.94
SLC28A1-202ENST00000338602 RSF1Q96T23 1441 aaPredicted RBP20.8■□□□□ 0.92
SLC28A1-202ENST00000338602 WIZO95785 1651 aa20.78■□□□□ 0.92
SLC28A1-202ENST00000338602 CUX2O14529 1486 aa20.75■□□□□ 0.91
SLC28A1-202ENST00000338602 TOP2AP11388 1531 aaKnown RBP20.6■□□□□ 0.89
SLC28A1-202ENST00000338602 ERCC6Q03468 1493 aa20.58■□□□□ 0.88
SLC28A1-202ENST00000338602 NESP48681 1621 aa20.55■□□□□ 0.88
SLC28A1-202ENST00000338602 LAMC3Q9Y6N6 1575 aa20.55■□□□□ 0.88
SLC28A1-202ENST00000338602 CADPSQ9ULU8 1353 aa20.51■□□□□ 0.87
SLC28A1-202ENST00000338602 TRIM41Q8WV44 630 aa20.5■□□□□ 0.87
SLC28A1-202ENST00000338602 PDS5BQ9NTI5 1447 aa20.47■□□□□ 0.87
SLC28A1-202ENST00000338602 CCDC88BA6NC98 1476 aa20.36■□□□□ 0.85
SLC28A1-202ENST00000338602 CFTRP13569 1480 aa20.35■□□□□ 0.85
SLC28A1-202ENST00000338602 SUPT5HO00267 1087 aaKnown RBP20.34■□□□□ 0.85
SLC28A1-202ENST00000338602 KIF21AQ7Z4S6 1674 aa20.29■□□□□ 0.84
SLC28A1-202ENST00000338602 FANCD2Q9BXW9 1451 aa20.25■□□□□ 0.83
SLC28A1-202ENST00000338602 CEP164Q9UPV0 1460 aa20.25■□□□□ 0.83
SLC28A1-202ENST00000338602 THOC2Q8NI27 1593 aaKnown RBP20.22■□□□□ 0.83
SLC28A1-202ENST00000338602 MRC2Q9UBG0 1479 aa20.21■□□□□ 0.83
SLC28A1-202ENST00000338602 PRDM2Q13029 1718 aa20.14■□□□□ 0.81
SLC28A1-202ENST00000338602 WDR62O43379 1518 aa20.1■□□□□ 0.81
SLC28A1-202ENST00000338602 URB2Q14146 1524 aaKnown RBP20■□□□□ 0.79
SLC28A1-202ENST00000338602 ABCC8Q09428 1581 aa19.98■□□□□ 0.79
SLC28A1-202ENST00000338602 TOPBP1Q92547 1522 aa19.9■□□□□ 0.78
SLC28A1-202ENST00000338602 DNMBPQ6XZF7 1577 aa19.88■□□□□ 0.77
SLC28A1-202ENST00000338602 IFT140Q96RY7 1462 aa19.83■□□□□ 0.77
SLC28A1-202ENST00000338602 POLA1P09884 1462 aaPredicted RBP19.73■□□□□ 0.75
SLC28A1-202ENST00000338602 OSCARQ8IYS5 282 aa19.73■□□□□ 0.75
SLC28A1-202ENST00000338602 CUX1P39880 1505 aa19.72■□□□□ 0.75
SLC28A1-202ENST00000338602 SOGA1O94964 1423 aa19.7■□□□□ 0.74
SLC28A1-202ENST00000338602 FGD5Q6ZNL6 1462 aa19.69■□□□□ 0.74
SLC28A1-202ENST00000338602 ZNF608Q9ULD9 1512 aaPredicted RBP19.67■□□□□ 0.74
SLC28A1-202ENST00000338602 TARBP1Q13395 1621 aaKnown RBP19.65■□□□□ 0.74
SLC28A1-202ENST00000338602 WRNQ14191 1432 aaPredicted RBP eCLIP19.65■□□□□ 0.74
SLC28A1-202ENST00000338602 RAD54L2Q9Y4B4 1467 aa19.64■□□□□ 0.73
SLC28A1-202ENST00000338602 EIF4G3O43432 1585 aaKnown RBP19.59■□□□□ 0.73
SLC28A1-202ENST00000338602 AQRO60306 1485 aaKnown RBP eCLIP19.59■□□□□ 0.73
SLC28A1-202ENST00000338602 TDRD9Q8NDG6 1382 aaKnown RBP19.57■□□□□ 0.72
SLC28A1-202ENST00000338602 WDR97A6NE52 1622 aa19.56■□□□□ 0.72
SLC28A1-202ENST00000338602 TOP2BQ02880 1626 aa19.56■□□□□ 0.72
SLC28A1-202ENST00000338602 BIVM-ERCC5R4GMW8 1640 aa19.54■□□□□ 0.72
SLC28A1-202ENST00000338602 AEBP2Q6ZN18 517 aaPredicted RBP19.53■□□□□ 0.72
SLC28A1-202ENST00000338602 SYNJ1O43426 1573 aa19.52■□□□□ 0.72
SLC28A1-202ENST00000338602 ABCA10Q8WWZ4 1543 aa19.51■□□□□ 0.71
SLC28A1-202ENST00000338602 GRIN2BQ13224 1484 aa19.47■□□□□ 0.71
SLC28A1-202ENST00000338602 GAPVD1Q14C86 1478 aa19.46■□□□□ 0.71
SLC28A1-202ENST00000338602 RIMBP3CA6NJZ7 1639 aa19.45■□□□□ 0.7
SLC28A1-202ENST00000338602 RIMBP3BA6NNM3 1639 aa19.45■□□□□ 0.7
SLC28A1-202ENST00000338602 RIMBP3Q9UFD9 1639 aa19.45■□□□□ 0.7
SLC28A1-202ENST00000338602 FBLN2P98095 1184 aa19.45■□□□□ 0.7
SLC28A1-202ENST00000338602 TRHP20396 242 aaPredicted RBP19.43■□□□□ 0.7
SLC28A1-202ENST00000338602 SNAPC4Q5SXM2 1469 aa19.41■□□□□ 0.7
SLC28A1-202ENST00000338602 MAGI1Q96QZ7 1491 aaPredicted RBP19.41■□□□□ 0.7
SLC28A1-202ENST00000338602 CHMP7Q8WUX9 453 aaPredicted RBP19.41■□□□□ 0.7
SLC28A1-202ENST00000338602 ABCA5Q8WWZ7 1642 aa19.38■□□□□ 0.69
SLC28A1-202ENST00000338602 PBRM1Q86U86 1689 aa19.35■□□□□ 0.69
SLC28A1-202ENST00000338602 CHD1O14646 1710 aa19.33■□□□□ 0.69
SLC28A1-202ENST00000338602 CYB5RLQ6IPT4 315 aa19.33■□□□□ 0.69
SLC28A1-202ENST00000338602 SYNJ2O15056 1496 aa19.33■□□□□ 0.69
SLC28A1-202ENST00000338602 ARHGEF11O15085 1522 aa19.33■□□□□ 0.68
SLC28A1-202ENST00000338602 ERICH3Q5RHP9 1530 aa19.28■□□□□ 0.68
SLC28A1-202ENST00000338602 KIF27Q86VH2 1401 aa19.27■□□□□ 0.68
SLC28A1-202ENST00000338602 FHAD1B1AJZ9 1412 aa19.25■□□□□ 0.67
SLC28A1-202ENST00000338602 ADAMTS12P58397 1594 aa19.21■□□□□ 0.67
SLC28A1-202ENST00000338602 GRIN2AQ12879 1464 aa19.19■□□□□ 0.66
SLC28A1-202ENST00000338602 IGF1RP08069 1367 aa19.16■□□□□ 0.66
SLC28A1-202ENST00000338602 CLASP1Q7Z460 1538 aa19.14■□□□□ 0.65
SLC28A1-202ENST00000338602 NUP160Q12769 1436 aa19.1■□□□□ 0.65
SLC28A1-202ENST00000338602 CUL7Q14999 1698 aa19.09■□□□□ 0.65
SLC28A1-202ENST00000338602 ARAP1Q96P48 1450 aa19.08■□□□□ 0.64
SLC28A1-202ENST00000338602 CARMIL1Q5VZK9 1371 aa19.07■□□□□ 0.64
SLC28A1-202ENST00000338602 CEP170Q5SW79 1584 aa19.05■□□□□ 0.64
SLC28A1-202ENST00000338602 RUSC2Q8N2Y8 1516 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms