RNA–Protein interactions for RNA: ENST00000331148.5

CLSTN3-202, Transcript of calsyntenin 3, humanhuman

TSL 1 (best)

Gene CLSTN3, Length 2,288 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-202ENST00000331148 ABCA8O94911 1581 aa25.15■■□□□ 1.62
CLSTN3-202ENST00000331148 ARHGEF11O15085 1522 aa25.15■■□□□ 1.62
CLSTN3-202ENST00000331148 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.15■■□□□ 1.62
CLSTN3-202ENST00000331148 MYOM3Q5VTT5 1437 aa25.14■■□□□ 1.61
CLSTN3-202ENST00000331148 MYT1LQ9UL68 1186 aa25.13■■□□□ 1.61
CLSTN3-202ENST00000331148 IRX6P78412 446 aaPredicted RBP25.12■■□□□ 1.61
CLSTN3-202ENST00000331148 HNRNPUQ00839 825 aaKnown RBP eCLIP25.11■■□□□ 1.61
CLSTN3-202ENST00000331148 OSCARQ8IYS5 282 aa25.1■■□□□ 1.61
CLSTN3-202ENST00000331148 ERICH6BQ5W0A0 696 aa25.06■■□□□ 1.6
CLSTN3-202ENST00000331148 ERCC6L2Q5T890 1561 aa25.06■■□□□ 1.6
CLSTN3-202ENST00000331148 TONSLQ96HA7 1378 aa25.06■■□□□ 1.6
CLSTN3-202ENST00000331148 TROQ12816 1431 aaPredicted RBP25.03■■□□□ 1.6
CLSTN3-202ENST00000331148 ATP10BO94823 1461 aa25.03■■□□□ 1.6
CLSTN3-202ENST00000331148 UACAQ9BZF9 1416 aa25.01■■□□□ 1.59
CLSTN3-202ENST00000331148 PPP4R2Q9NY27 417 aa25.01■■□□□ 1.59
CLSTN3-202ENST00000331148 PTPN23Q9H3S7 1636 aa25■■□□□ 1.59
CLSTN3-202ENST00000331148 PLEKHD1A6NEE1 506 aa24.99■■□□□ 1.59
CLSTN3-202ENST00000331148 MIA2Q96PC5 1412 aa24.99■■□□□ 1.59
CLSTN3-202ENST00000331148 DEKP35659 375 aaKnown RBP24.98■■□□□ 1.59
CLSTN3-202ENST00000331148 ADCY10Q96PN6 1610 aa24.96■■□□□ 1.59
CLSTN3-202ENST00000331148 TCOF1Q13428 1488 aaKnown RBP24.95■■□□□ 1.58
CLSTN3-202ENST00000331148 ABCC2Q92887 1545 aa24.9■■□□□ 1.58
CLSTN3-202ENST00000331148 KIF14Q15058 1648 aa24.89■■□□□ 1.57
CLSTN3-202ENST00000331148 KDM5BQ9UGL1 1544 aa24.89■■□□□ 1.57
CLSTN3-202ENST00000331148 PTPRKQ15262 1439 aa24.88■■□□□ 1.57
CLSTN3-202ENST00000331148 ITSN2Q9NZM3 1697 aa24.87■■□□□ 1.57
CLSTN3-202ENST00000331148 DNAJC5Q9H3Z4 198 aa24.87■■□□□ 1.57
CLSTN3-202ENST00000331148 GPATCH8Q9UKJ3 1502 aaKnown RBP24.83■■□□□ 1.57
CLSTN3-202ENST00000331148 HFM1A2PYH4 1435 aa24.83■■□□□ 1.57
CLSTN3-202ENST00000331148 WASHC2AQ641Q2 1341 aa24.83■■□□□ 1.57
CLSTN3-202ENST00000331148 UHRF1BP1LA0JNW5 1464 aa24.83■■□□□ 1.57
CLSTN3-202ENST00000331148 NOP58Q9Y2X3 529 aaKnown RBP24.83■■□□□ 1.57
CLSTN3-202ENST00000331148 B4GALNT3Q6L9W6 998 aa24.82■■□□□ 1.56
CLSTN3-202ENST00000331148 CFDP1Q9UEE9 299 aaPredicted RBP24.82■■□□□ 1.56
CLSTN3-202ENST00000331148 ABCC10Q5T3U5 1492 aa24.79■■□□□ 1.56
CLSTN3-202ENST00000331148 ZNF644Q9H582 1327 aaPredicted RBP24.78■■□□□ 1.56
CLSTN3-202ENST00000331148 PRKCSHP14314 528 aaPredicted RBP24.78■■□□□ 1.56
CLSTN3-202ENST00000331148 CNTLNQ9NXG0 1405 aa24.77■■□□□ 1.56
CLSTN3-202ENST00000331148 HSPA5P11021 654 aaKnown RBP24.77■■□□□ 1.56
CLSTN3-202ENST00000331148 CCDC184Q52MB2 194 aa24.77■■□□□ 1.56
CLSTN3-202ENST00000331148 CDC42BPAQ5VT25 1732 aa24.74■■□□□ 1.55
CLSTN3-202ENST00000331148 CHIC2Q9UKJ5 165 aa24.74■■□□□ 1.55
CLSTN3-202ENST00000331148 ZBED9Q6R2W3 1325 aa24.73■■□□□ 1.55
CLSTN3-202ENST00000331148 NAIPQ13075 1403 aa24.73■■□□□ 1.55
CLSTN3-202ENST00000331148 PAK3O75914 559 aaPredicted RBP24.73■■□□□ 1.55
CLSTN3-202ENST00000331148 NBR1Q14596 966 aa24.73■■□□□ 1.55
CLSTN3-202ENST00000331148 ZCCHC11Q5TAX3 1644 aaKnown RBP24.73■■□□□ 1.55
CLSTN3-202ENST00000331148 CAMSAP2Q08AD1 1489 aa24.72■■□□□ 1.55
CLSTN3-202ENST00000331148 DAPK1P53355 1430 aa24.72■■□□□ 1.55
CLSTN3-202ENST00000331148 ZNF777Q9ULD5 760 aaPredicted RBP24.72■■□□□ 1.55
CLSTN3-202ENST00000331148 AKNAQ7Z591 1439 aa24.72■■□□□ 1.55
CLSTN3-202ENST00000331148 DNMT1P26358 1616 aaKnown RBP24.71■■□□□ 1.55
CLSTN3-202ENST00000331148 ABCC5O15440 1437 aa24.7■■□□□ 1.54
CLSTN3-202ENST00000331148 RRP7BPQ9NSQ0 103 aa24.69■■□□□ 1.54
CLSTN3-202ENST00000331148 FAM9BQ8IZU0 186 aa24.66■■□□□ 1.54
CLSTN3-202ENST00000331148 GCC2Q8IWJ2 1684 aa24.66■■□□□ 1.54
CLSTN3-202ENST00000331148 PRKRIP1Q9H875 184 aaPredicted RBP24.66■■□□□ 1.54
CLSTN3-202ENST00000331148 EIF4G2P78344 907 aaKnown RBP eCLIP24.65■■□□□ 1.54
CLSTN3-202ENST00000331148 ROCK1Q13464 1354 aa24.64■■□□□ 1.53
CLSTN3-202ENST00000331148 MRS2Q9HD23 443 aa24.64■■□□□ 1.53
CLSTN3-202ENST00000331148 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.63■■□□□ 1.53
CLSTN3-202ENST00000331148 RIMBP3CA6NJZ7 1639 aa24.61■■□□□ 1.53
CLSTN3-202ENST00000331148 RIMBP3BA6NNM3 1639 aa24.61■■□□□ 1.53
CLSTN3-202ENST00000331148 PREX2Q70Z35 1606 aa24.61■■□□□ 1.53
CLSTN3-202ENST00000331148 RIMBP3Q9UFD9 1639 aa24.61■■□□□ 1.53
CLSTN3-202ENST00000331148 NCOA1Q15788 1441 aa24.61■■□□□ 1.53
CLSTN3-202ENST00000331148 TTC37Q6PGP7 1564 aa24.6■■□□□ 1.53
CLSTN3-202ENST00000331148 CDC42BPBQ9Y5S2 1711 aa24.6■■□□□ 1.53
CLSTN3-202ENST00000331148 CCDC7Q96M83 1385 aa24.59■■□□□ 1.53
CLSTN3-202ENST00000331148 CROCC2H7BZ55 1655 aa24.58■■□□□ 1.52
CLSTN3-202ENST00000331148 ANP32AP39687 249 aaKnown RBP24.56■■□□□ 1.52
CLSTN3-202ENST00000331148 IPO9Q96P70 1041 aaKnown RBP24.56■■□□□ 1.52
CLSTN3-202ENST00000331148 C11orf95C9JLR9 678 aaPredicted RBP24.55■■□□□ 1.52
CLSTN3-202ENST00000331148 DENND4BO75064 1496 aaPredicted RBP24.55■■□□□ 1.52
CLSTN3-202ENST00000331148 SMG6Q86US8 1419 aaKnown RBP24.54■■□□□ 1.52
CLSTN3-202ENST00000331148 MYO5CQ9NQX4 1742 aa24.54■■□□□ 1.52
CLSTN3-202ENST00000331148 ADGBQ8N7X0 1667 aa24.54■■□□□ 1.52
CLSTN3-202ENST00000331148 ARHGAP5Q13017 1502 aa24.53■■□□□ 1.52
CLSTN3-202ENST00000331148 RTL5Q5HYW3 569 aaPredicted RBP24.52■■□□□ 1.52
CLSTN3-202ENST00000331148 SAMD9LQ8IVG5 1584 aa24.52■■□□□ 1.52
CLSTN3-202ENST00000331148 HNRNPMP52272 730 aaKnown RBP eCLIP24.52■■□□□ 1.52
CLSTN3-202ENST00000331148 WDR7Q9Y4E6 1490 aa24.51■■□□□ 1.51
CLSTN3-202ENST00000331148 KDM6BO15054 1643 aa24.51■■□□□ 1.51
CLSTN3-202ENST00000331148 ADGRL2O95490 1459 aa24.5■■□□□ 1.51
CLSTN3-202ENST00000331148 SHANK2Q9UPX8 1470 aa24.5■■□□□ 1.51
CLSTN3-202ENST00000331148 NPM1P06748 294 aaKnown RBP eCLIP24.5■■□□□ 1.51
CLSTN3-202ENST00000331148 TSPY4P0CV99 314 aa24.5■■□□□ 1.51
CLSTN3-202ENST00000331148 TSPY10P0CW01 314 aa24.5■■□□□ 1.51
CLSTN3-202ENST00000331148 RSPH4AQ5TD94 716 aa24.5■■□□□ 1.51
CLSTN3-202ENST00000331148 ARHGEF5Q12774 1597 aa24.49■■□□□ 1.51
CLSTN3-202ENST00000331148 MBD5Q9P267 1494 aa24.49■■□□□ 1.51
CLSTN3-202ENST00000331148 PLCH2O75038 1416 aa24.49■■□□□ 1.51
CLSTN3-202ENST00000331148 ANKRD30AQ9BXX3 1397 aa24.49■■□□□ 1.51
CLSTN3-202ENST00000331148 RNF123Q5XPI4 1314 aa24.48■■□□□ 1.51
CLSTN3-202ENST00000331148 ZBTB47Q9UFB7 747 aaPredicted RBP24.47■■□□□ 1.51
CLSTN3-202ENST00000331148 CCDC136Q96JN2 1154 aa24.47■■□□□ 1.51
CLSTN3-202ENST00000331148 ANO8Q9HCE9 1232 aaPredicted RBP24.47■■□□□ 1.51
CLSTN3-202ENST00000331148 C9orf84Q5VXU9 1444 aa24.45■■□□□ 1.5
CLSTN3-202ENST00000331148 ASXL2Q76L83 1435 aa24.45■■□□□ 1.5
CLSTN3-202ENST00000331148 EFCAB2Q5VUJ9 269 aa24.45■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms