RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 IFT140Q96RY7 1462 aa12.17□□□□□ -0.46
CLK1-201ENST00000321356 NUP153P49790 1475 aaKnown RBP12.16□□□□□ -0.46
CLK1-201ENST00000321356 RPRD2Q5VT52 1461 aaKnown RBP12.16□□□□□ -0.46
CLK1-201ENST00000321356 ANKRD30BQ9BXX2 1392 aa12.16□□□□□ -0.46
CLK1-201ENST00000321356 ABCC5O15440 1437 aa12.16□□□□□ -0.46
CLK1-201ENST00000321356 CNTLNQ9NXG0 1405 aa12.16□□□□□ -0.46
CLK1-201ENST00000321356 TEX14Q8IWB6 1497 aa12.16□□□□□ -0.46
CLK1-201ENST00000321356 RAPGEF6Q8TEU7 1601 aa12.15□□□□□ -0.46
CLK1-201ENST00000321356 NCOA1Q15788 1441 aa12.15□□□□□ -0.46
CLK1-201ENST00000321356 POLR1AO95602 1720 aaPredicted RBP12.15□□□□□ -0.46
CLK1-201ENST00000321356 EIF4G2P78344 907 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLK1-201ENST00000321356 L3MBTL2Q969R5 705 aa12.14□□□□□ -0.47
CLK1-201ENST00000321356 ZNF608Q9ULD9 1512 aaPredicted RBP12.14□□□□□ -0.47
CLK1-201ENST00000321356 GRIN2AQ12879 1464 aa12.11□□□□□ -0.47
CLK1-201ENST00000321356 CCDC7Q96M83 1385 aa12.11□□□□□ -0.47
CLK1-201ENST00000321356 SPATA31E1Q6ZUB1 1445 aa12.11□□□□□ -0.47
CLK1-201ENST00000321356 ADGBQ8N7X0 1667 aa12.1□□□□□ -0.47
CLK1-201ENST00000321356 ITSN2Q9NZM3 1697 aa12.1□□□□□ -0.47
CLK1-201ENST00000321356 ADCY10Q96PN6 1610 aa12.1□□□□□ -0.47
CLK1-201ENST00000321356 EIF4G3O43432 1585 aaKnown RBP12.09□□□□□ -0.47
CLK1-201ENST00000321356 HNRNPUQ00839 825 aaKnown RBP eCLIP12.09□□□□□ -0.47
CLK1-201ENST00000321356 CROCC2H7BZ55 1655 aa12.09□□□□□ -0.47
CLK1-201ENST00000321356 PZPP20742 1482 aa12.09□□□□□ -0.47
CLK1-201ENST00000321356 TROQ12816 1431 aaPredicted RBP12.08□□□□□ -0.48
CLK1-201ENST00000321356 ADGRL2O95490 1459 aa12.08□□□□□ -0.48
CLK1-201ENST00000321356 C11orf95C9JLR9 678 aaPredicted RBP12.08□□□□□ -0.48
CLK1-201ENST00000321356 NBPF8Q3BBV2 869 aa12.08□□□□□ -0.48
CLK1-201ENST00000321356 CAMSAP2Q08AD1 1489 aa12.07□□□□□ -0.48
CLK1-201ENST00000321356 ZNF644Q9H582 1327 aaPredicted RBP12.07□□□□□ -0.48
CLK1-201ENST00000321356 ARID3CA6NKF2 412 aa12.07□□□□□ -0.48
CLK1-201ENST00000321356 ANP32EQ9BTT0 268 aa12.07□□□□□ -0.48
CLK1-201ENST00000321356 MBD5Q9P267 1494 aa12.07□□□□□ -0.48
CLK1-201ENST00000321356 PRKRIP1Q9H875 184 aaPredicted RBP12.06□□□□□ -0.48
CLK1-201ENST00000321356 CDK11AQ9UQ88 783 aaPredicted RBP12.06□□□□□ -0.48
CLK1-201ENST00000321356 GPATCH8Q9UKJ3 1502 aaKnown RBP12.05□□□□□ -0.48
CLK1-201ENST00000321356 PRG4Q92954 1404 aaPredicted RBP12.05□□□□□ -0.48
CLK1-201ENST00000321356 MAGI1Q96QZ7 1491 aaPredicted RBP12.04□□□□□ -0.48
CLK1-201ENST00000321356 RBM19Q9Y4C8 960 aaKnown RBP12.04□□□□□ -0.48
CLK1-201ENST00000321356 KIF14Q15058 1648 aa12.04□□□□□ -0.48
CLK1-201ENST00000321356 CEP170Q5SW79 1584 aa12.04□□□□□ -0.48
CLK1-201ENST00000321356 CCDC184Q52MB2 194 aa12.04□□□□□ -0.48
CLK1-201ENST00000321356 ERICH6BQ5W0A0 696 aa12.04□□□□□ -0.48
CLK1-201ENST00000321356 SLC4A1APQ9BWU0 796 aaKnown RBP12.04□□□□□ -0.48
CLK1-201ENST00000321356 KIF7Q2M1P5 1343 aa12.03□□□□□ -0.48
CLK1-201ENST00000321356 KIAA1107Q9UPP5 1409 aa12.02□□□□□ -0.49
CLK1-201ENST00000321356 PLB1Q6P1J6 1458 aa12.01□□□□□ -0.49
CLK1-201ENST00000321356 SYNJ2O15056 1496 aa12.01□□□□□ -0.49
CLK1-201ENST00000321356 ZBED9Q6R2W3 1325 aa12□□□□□ -0.49
CLK1-201ENST00000321356 CFDP1Q9UEE9 299 aaPredicted RBP12□□□□□ -0.49
CLK1-201ENST00000321356 BCORL1Q5H9F3 1711 aa11.99□□□□□ -0.49
CLK1-201ENST00000321356 CDC42BPAQ5VT25 1732 aa11.99□□□□□ -0.49
CLK1-201ENST00000321356 NUP160Q12769 1436 aa11.99□□□□□ -0.49
CLK1-201ENST00000321356 SHANK2Q9UPX8 1470 aa11.99□□□□□ -0.49
CLK1-201ENST00000321356 KDM5CP41229 1560 aa11.98□□□□□ -0.49
CLK1-201ENST00000321356 DHX29Q7Z478 1369 aaKnown RBP11.98□□□□□ -0.49
CLK1-201ENST00000321356 MRS2Q9HD23 443 aa11.97□□□□□ -0.49
CLK1-201ENST00000321356 ANKRD30AQ9BXX3 1397 aa11.97□□□□□ -0.49
CLK1-201ENST00000321356 KDM5DQ9BY66 1539 aa11.97□□□□□ -0.49
CLK1-201ENST00000321356 MSH5O43196 834 aa11.97□□□□□ -0.49
CLK1-201ENST00000321356 UHRF1BP1Q6BDS2 1440 aa11.97□□□□□ -0.49
CLK1-201ENST00000321356 CARMIL2Q6F5E8 1435 aa11.97□□□□□ -0.49
CLK1-201ENST00000321356 ABCA8O94911 1581 aa11.97□□□□□ -0.49
CLK1-201ENST00000321356 ABCC10Q5T3U5 1492 aa11.96□□□□□ -0.49
CLK1-201ENST00000321356 PPP6R1Q9UPN7 881 aa11.96□□□□□ -0.49
CLK1-201ENST00000321356 ARHGEF12Q9NZN5 1544 aa11.96□□□□□ -0.5
CLK1-201ENST00000321356 ANKRD50Q9ULJ7 1429 aa11.96□□□□□ -0.5
CLK1-201ENST00000321356 ARID4BQ4LE39 1312 aaPredicted RBP11.95□□□□□ -0.5
CLK1-201ENST00000321356 RALGAPBQ86X10 1494 aa11.95□□□□□ -0.5
CLK1-201ENST00000321356 USP47Q96K76 1375 aa11.95□□□□□ -0.5
CLK1-201ENST00000321356 IRX6P78412 446 aaPredicted RBP11.94□□□□□ -0.5
CLK1-201ENST00000321356 FAM9BQ8IZU0 186 aa11.94□□□□□ -0.5
CLK1-201ENST00000321356 PIAS4Q8N2W9 510 aaPredicted RBP11.94□□□□□ -0.5
CLK1-201ENST00000321356 PPP4R2Q9NY27 417 aa11.94□□□□□ -0.5
CLK1-201ENST00000321356 ADRA2BP18089 450 aa11.93□□□□□ -0.5
CLK1-201ENST00000321356 PKD2Q13563 968 aa11.93□□□□□ -0.5
CLK1-201ENST00000321356 FANCIQ9NVI1 1328 aa11.92□□□□□ -0.5
CLK1-201ENST00000321356 CHMP7Q8WUX9 453 aaPredicted RBP11.92□□□□□ -0.5
CLK1-201ENST00000321356 PTPRGP23470 1445 aa11.92□□□□□ -0.5
CLK1-201ENST00000321356 C9orf84Q5VXU9 1444 aa11.92□□□□□ -0.5
CLK1-201ENST00000321356 ARHGEF5Q12774 1597 aa11.92□□□□□ -0.5
CLK1-201ENST00000321356 ATP10BO94823 1461 aa11.91□□□□□ -0.5
CLK1-201ENST00000321356 SMG6Q86US8 1419 aaKnown RBP11.91□□□□□ -0.5
CLK1-201ENST00000321356 JPH4Q96JJ6 628 aa11.91□□□□□ -0.5
CLK1-201ENST00000321356 ZNF777Q9ULD5 760 aaPredicted RBP11.9□□□□□ -0.5
CLK1-201ENST00000321356 ROCK2O75116 1388 aaKnown RBP11.9□□□□□ -0.5
CLK1-201ENST00000321356 ERCC6Q03468 1493 aa11.89□□□□□ -0.51
CLK1-201ENST00000321356 NUP155O75694 1391 aa11.88□□□□□ -0.51
CLK1-201ENST00000321356 E9PCH4 1651 aa11.88□□□□□ -0.51
CLK1-201ENST00000321356 PLEKHD1A6NEE1 506 aa11.87□□□□□ -0.51
CLK1-201ENST00000321356 RNF123Q5XPI4 1314 aa11.86□□□□□ -0.51
CLK1-201ENST00000321356 PREX2Q70Z35 1606 aa11.86□□□□□ -0.51
CLK1-201ENST00000321356 KIF15Q9NS87 1388 aa11.85□□□□□ -0.51
CLK1-201ENST00000321356 CDC42BPBQ9Y5S2 1711 aa11.85□□□□□ -0.51
CLK1-201ENST00000321356 SAMD9LQ8IVG5 1584 aa11.85□□□□□ -0.51
CLK1-201ENST00000321356 ZNF326Q5BKZ1 582 aaKnown RBP11.84□□□□□ -0.51
CLK1-201ENST00000321356 KTN1Q86UP2 1357 aaKnown RBP11.84□□□□□ -0.51
CLK1-201ENST00000321356 CCDC141Q6ZP82 1450 aa11.83□□□□□ -0.52
CLK1-201ENST00000321356 PNISRQ8TF01 805 aaKnown RBP11.83□□□□□ -0.52
CLK1-201ENST00000321356 NUDCQ9Y266 331 aa11.83□□□□□ -0.52
CLK1-201ENST00000321356 LRPPRCP42704 1394 aaKnown RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms