RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 ARHGAP5Q13017 1502 aa27.77■■■□□ 2.04
SSSCA1-201ENST00000309328 PREX2Q70Z35 1606 aa27.77■■■□□ 2.04
SSSCA1-201ENST00000309328 CFDP1Q9UEE9 299 aaPredicted RBP27.75■■■□□ 2.03
SSSCA1-201ENST00000309328 AKNAQ7Z591 1439 aa27.74■■■□□ 2.03
SSSCA1-201ENST00000309328 ITSN2Q9NZM3 1697 aa27.73■■■□□ 2.03
SSSCA1-201ENST00000309328 PLEKHH2Q8IVE3 1493 aa27.7■■■□□ 2.02
SSSCA1-201ENST00000309328 CDC42BPAQ5VT25 1732 aa27.7■■■□□ 2.02
SSSCA1-201ENST00000309328 MYOM3Q5VTT5 1437 aa27.69■■■□□ 2.02
SSSCA1-201ENST00000309328 MIA2Q96PC5 1412 aa27.69■■■□□ 2.02
SSSCA1-201ENST00000309328 ADGRL1O94910 1474 aa27.67■■■□□ 2.02
SSSCA1-201ENST00000309328 KDM6BO15054 1643 aa27.67■■■□□ 2.02
SSSCA1-201ENST00000309328 CDC42BPBQ9Y5S2 1711 aa27.66■■■□□ 2.02
SSSCA1-201ENST00000309328 KIAA1107Q9UPP5 1409 aa27.65■■■□□ 2.02
SSSCA1-201ENST00000309328 DENND4BO75064 1496 aaPredicted RBP27.64■■■□□ 2.02
SSSCA1-201ENST00000309328 SCAPERQ9BY12 1400 aa27.62■■■□□ 2.01
SSSCA1-201ENST00000309328 ZNF777Q9ULD5 760 aaPredicted RBP27.6■■■□□ 2.01
SSSCA1-201ENST00000309328 ABCC1P33527 1531 aa27.59■■■□□ 2.01
SSSCA1-201ENST00000309328 COL17A1Q9UMD9 1497 aaPredicted RBP27.57■■■□□ 2
SSSCA1-201ENST00000309328 RSPH4AQ5TD94 716 aa27.57■■■□□ 2
SSSCA1-201ENST00000309328 POGZQ7Z3K3 1410 aa27.57■■■□□ 2
SSSCA1-201ENST00000309328 ZNF518AQ6AHZ1 1483 aa27.57■■■□□ 2
SSSCA1-201ENST00000309328 FGD6Q6ZV73 1430 aa27.56■■■□□ 2
SSSCA1-201ENST00000309328 SAMD9LQ8IVG5 1584 aa27.56■■■□□ 2
SSSCA1-201ENST00000309328 CAMSAP2Q08AD1 1489 aa27.52■■■□□ 2
SSSCA1-201ENST00000309328 RAPGEF3O95398 923 aa27.51■■□□□ 1.99
SSSCA1-201ENST00000309328 SYCP2Q9BX26 1530 aa27.5■■□□□ 1.99
SSSCA1-201ENST00000309328 MAGI2Q86UL8 1455 aa27.5■■□□□ 1.99
SSSCA1-201ENST00000309328 ZMYM4Q5VZL5 1548 aa27.48■■□□□ 1.99
SSSCA1-201ENST00000309328 TCOF1Q13428 1488 aaKnown RBP27.48■■□□□ 1.99
SSSCA1-201ENST00000309328 ARHGEF12Q9NZN5 1544 aa27.47■■□□□ 1.99
SSSCA1-201ENST00000309328 ZNF644Q9H582 1327 aaPredicted RBP27.47■■□□□ 1.99
SSSCA1-201ENST00000309328 PPARGC1BQ86YN6 1023 aaKnown RBP27.47■■□□□ 1.99
SSSCA1-201ENST00000309328 MBD5Q9P267 1494 aa27.46■■□□□ 1.99
SSSCA1-201ENST00000309328 KDM5CP41229 1560 aa27.46■■□□□ 1.99
SSSCA1-201ENST00000309328 PTPN23Q9H3S7 1636 aa27.45■■□□□ 1.99
SSSCA1-201ENST00000309328 RICTORQ6R327 1708 aa27.45■■□□□ 1.99
SSSCA1-201ENST00000309328 HNRNPMP52272 730 aaKnown RBP eCLIP27.45■■□□□ 1.98
SSSCA1-201ENST00000309328 FRMPD1Q5SYB0 1578 aa27.44■■□□□ 1.98
SSSCA1-201ENST00000309328 TRAPPC8Q9Y2L5 1435 aa27.44■■□□□ 1.98
SSSCA1-201ENST00000309328 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.44■■□□□ 1.98
SSSCA1-201ENST00000309328 CCDC141Q6ZP82 1450 aa27.44■■□□□ 1.98
SSSCA1-201ENST00000309328 ARHGEF5Q12774 1597 aa27.43■■□□□ 1.98
SSSCA1-201ENST00000309328 AFAP1Q8N556 730 aa27.43■■□□□ 1.98
SSSCA1-201ENST00000309328 MLH3Q9UHC1 1453 aa27.42■■□□□ 1.98
SSSCA1-201ENST00000309328 TSPY4P0CV99 314 aa27.39■■□□□ 1.98
SSSCA1-201ENST00000309328 TSPY10P0CW01 314 aa27.39■■□□□ 1.98
SSSCA1-201ENST00000309328 SPAG9O60271 1321 aaKnown RBP27.39■■□□□ 1.97
SSSCA1-201ENST00000309328 RRBP1Q9P2E9 1410 aaKnown RBP27.38■■□□□ 1.97
SSSCA1-201ENST00000309328 RTEL1-TNFRSF6BF6WH68 1400 aa27.37■■□□□ 1.97
SSSCA1-201ENST00000309328 HECW2Q9P2P5 1572 aa27.36■■□□□ 1.97
SSSCA1-201ENST00000309328 FAM50AQ14320 339 aaKnown RBP27.36■■□□□ 1.97
SSSCA1-201ENST00000309328 ZFYVE16Q7Z3T8 1539 aa27.35■■□□□ 1.97
SSSCA1-201ENST00000309328 SHANK2Q9UPX8 1470 aa27.33■■□□□ 1.97
SSSCA1-201ENST00000309328 ARHGEF40Q8TER5 1519 aa27.33■■□□□ 1.97
SSSCA1-201ENST00000309328 MYT1LQ9UL68 1186 aa27.33■■□□□ 1.97
SSSCA1-201ENST00000309328 DAPK1P53355 1430 aa27.3■■□□□ 1.96
SSSCA1-201ENST00000309328 ATP7AQ04656 1500 aa27.29■■□□□ 1.96
SSSCA1-201ENST00000309328 DNMT1P26358 1616 aaKnown RBP27.29■■□□□ 1.96
SSSCA1-201ENST00000309328 ABCC5O15440 1437 aa27.28■■□□□ 1.96
SSSCA1-201ENST00000309328 INO80Q9ULG1 1556 aaPredicted RBP27.27■■□□□ 1.96
SSSCA1-201ENST00000309328 MAST1Q9Y2H9 1570 aa27.27■■□□□ 1.96
SSSCA1-201ENST00000309328 ATP10AO60312 1499 aa27.27■■□□□ 1.96
SSSCA1-201ENST00000309328 C9orf84Q5VXU9 1444 aa27.27■■□□□ 1.96
SSSCA1-201ENST00000309328 YEATS2Q9ULM3 1422 aa27.26■■□□□ 1.95
SSSCA1-201ENST00000309328 REREQ9P2R6 1566 aa27.22■■□□□ 1.95
SSSCA1-201ENST00000309328 KIDINS220Q9ULH0 1771 aa27.22■■□□□ 1.95
SSSCA1-201ENST00000309328 DIP2CQ9Y2E4 1556 aa27.2■■□□□ 1.94
SSSCA1-201ENST00000309328 CROCC2H7BZ55 1655 aa27.19■■□□□ 1.94
SSSCA1-201ENST00000309328 ANKRD30AQ9BXX3 1397 aa27.19■■□□□ 1.94
SSSCA1-201ENST00000309328 ABCA6Q8N139 1617 aa27.17■■□□□ 1.94
SSSCA1-201ENST00000309328 PLXNC1O60486 1568 aa27.17■■□□□ 1.94
SSSCA1-201ENST00000309328 ADGRL2O95490 1459 aa27.16■■□□□ 1.94
SSSCA1-201ENST00000309328 A2MP01023 1474 aa27.15■■□□□ 1.94
SSSCA1-201ENST00000309328 ROCK1Q13464 1354 aa27.15■■□□□ 1.94
SSSCA1-201ENST00000309328 DHX29Q7Z478 1369 aaKnown RBP27.13■■□□□ 1.93
SSSCA1-201ENST00000309328 AGLP35573 1532 aa27.13■■□□□ 1.93
SSSCA1-201ENST00000309328 ADGBQ8N7X0 1667 aa27.13■■□□□ 1.93
SSSCA1-201ENST00000309328 NCOA1Q15788 1441 aa27.12■■□□□ 1.93
SSSCA1-201ENST00000309328 KIF15Q9NS87 1388 aa27.11■■□□□ 1.93
SSSCA1-201ENST00000309328 ARID4BQ4LE39 1312 aaPredicted RBP27.11■■□□□ 1.93
SSSCA1-201ENST00000309328 DUOX2Q9NRD8 1548 aa27.09■■□□□ 1.93
SSSCA1-201ENST00000309328 CHIC2Q9UKJ5 165 aa27.08■■□□□ 1.93
SSSCA1-201ENST00000309328 PTPRKQ15262 1439 aa27.07■■□□□ 1.92
SSSCA1-201ENST00000309328 ITGAEP38570 1179 aa27.06■■□□□ 1.92
SSSCA1-201ENST00000309328 ERBINQ96RT1 1412 aa27.06■■□□□ 1.92
SSSCA1-201ENST00000309328 RRP7BPQ9NSQ0 103 aa27.05■■□□□ 1.92
SSSCA1-201ENST00000309328 PPP6R1Q9UPN7 881 aa27.02■■□□□ 1.92
SSSCA1-201ENST00000309328 EIF2AK4Q9P2K8 1649 aaKnown RBP26.98■■□□□ 1.91
SSSCA1-201ENST00000309328 ANKRD50Q9ULJ7 1429 aa26.98■■□□□ 1.91
SSSCA1-201ENST00000309328 BCORL1Q5H9F3 1711 aa26.96■■□□□ 1.91
SSSCA1-201ENST00000309328 KIF3BO15066 747 aa26.96■■□□□ 1.91
SSSCA1-201ENST00000309328 HFM1A2PYH4 1435 aa26.94■■□□□ 1.9
SSSCA1-201ENST00000309328 FAM135AQ9P2D6 1515 aa26.94■■□□□ 1.9
SSSCA1-201ENST00000309328 ACIN1Q9UKV3 1341 aaKnown RBP26.91■■□□□ 1.9
SSSCA1-201ENST00000309328 ESF1Q9H501 851 aaKnown RBP26.91■■□□□ 1.9
SSSCA1-201ENST00000309328 CNTLNQ9NXG0 1405 aa26.9■■□□□ 1.9
SSSCA1-201ENST00000309328 SIGLEC1Q9BZZ2 1709 aa26.9■■□□□ 1.9
SSSCA1-201ENST00000309328 MLECQ14165 292 aa26.89■■□□□ 1.9
SSSCA1-201ENST00000309328 GGT6Q6P531 493 aa26.88■■□□□ 1.89
SSSCA1-201ENST00000309328 NAIPQ13075 1403 aa26.88■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms