RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 ZMYM4Q5VZL5 1548 aa42.34■■■■■ 4.37
CDKN2A-201ENST00000304494 POGZQ7Z3K3 1410 aa42.32■■■■■ 4.37
CDKN2A-201ENST00000304494 ARHGEF40Q8TER5 1519 aa42.3■■■■■ 4.36
CDKN2A-201ENST00000304494 MAGI2Q86UL8 1455 aa42.28■■■■■ 4.36
CDKN2A-201ENST00000304494 PREX2Q70Z35 1606 aa42.28■■■■■ 4.36
CDKN2A-201ENST00000304494 CDC42BPBQ9Y5S2 1711 aa42.26■■■■■ 4.36
CDKN2A-201ENST00000304494 ZFYVE16Q7Z3T8 1539 aa42.23■■■■■ 4.35
CDKN2A-201ENST00000304494 MTUS2Q5JR59 1369 aa42.22■■■■■ 4.35
CDKN2A-201ENST00000304494 ZNF518AQ6AHZ1 1483 aa42.19■■■■■ 4.34
CDKN2A-201ENST00000304494 ARID4BQ4LE39 1312 aaPredicted RBP42.18■■■■■ 4.34
CDKN2A-201ENST00000304494 CDC42BPAQ5VT25 1732 aa42.16■■■■■ 4.34
CDKN2A-201ENST00000304494 YEATS2Q9ULM3 1422 aa42.15■■■■■ 4.34
CDKN2A-201ENST00000304494 ABCC1P33527 1531 aa42.1■■■■■ 4.33
CDKN2A-201ENST00000304494 EHBP1L1Q8N3D4 1523 aa42.1■■■■■ 4.33
CDKN2A-201ENST00000304494 GPATCH8Q9UKJ3 1502 aaKnown RBP42.1■■■■■ 4.33
CDKN2A-201ENST00000304494 KDM5CP41229 1560 aa42.09■■■■■ 4.33
CDKN2A-201ENST00000304494 VPS8Q8N3P4 1428 aa42.08■■■■■ 4.33
CDKN2A-201ENST00000304494 BCORL1Q5H9F3 1711 aa42.08■■■■■ 4.33
CDKN2A-201ENST00000304494 ADAMTSL3P82987 1691 aa42.07■■■■■ 4.33
CDKN2A-201ENST00000304494 AFAP1Q8N556 730 aa42.07■■■■■ 4.33
CDKN2A-201ENST00000304494 CCNB3Q8WWL7 1395 aa42.06■■■■■ 4.32
CDKN2A-201ENST00000304494 ITSN2Q9NZM3 1697 aa42.01■■■■■ 4.32
CDKN2A-201ENST00000304494 ATP10AO60312 1499 aa42.01■■■■■ 4.32
CDKN2A-201ENST00000304494 ARHGEF12Q9NZN5 1544 aa42■■■■■ 4.31
CDKN2A-201ENST00000304494 ZNF777Q9ULD5 760 aaPredicted RBP42■■■■■ 4.31
CDKN2A-201ENST00000304494 HECW2Q9P2P5 1572 aa41.99■■■■■ 4.31
CDKN2A-201ENST00000304494 CFDP1Q9UEE9 299 aaPredicted RBP41.99■■■■■ 4.31
CDKN2A-201ENST00000304494 C9orf84Q5VXU9 1444 aa41.97■■■■■ 4.31
CDKN2A-201ENST00000304494 TRAPPC8Q9Y2L5 1435 aa41.97■■■■■ 4.31
CDKN2A-201ENST00000304494 MYT1LQ9UL68 1186 aa41.97■■■■■ 4.31
CDKN2A-201ENST00000304494 SAMD9LQ8IVG5 1584 aa41.97■■■■■ 4.31
CDKN2A-201ENST00000304494 MLH3Q9UHC1 1453 aa41.95■■■■■ 4.31
CDKN2A-201ENST00000304494 TIAM1Q13009 1591 aa41.95■■■■■ 4.31
CDKN2A-201ENST00000304494 PTPRMP28827 1452 aa41.92■■■■■ 4.3
CDKN2A-201ENST00000304494 MADDQ8WXG6 1647 aa41.92■■■■■ 4.3
CDKN2A-201ENST00000304494 SIGLEC1Q9BZZ2 1709 aa41.92■■■■■ 4.3
CDKN2A-201ENST00000304494 PLEKHH2Q8IVE3 1493 aa41.92■■■■■ 4.3
CDKN2A-201ENST00000304494 SYCP2Q9BX26 1530 aa41.89■■■■■ 4.3
CDKN2A-201ENST00000304494 KIAA1107Q9UPP5 1409 aa41.88■■■■■ 4.3
CDKN2A-201ENST00000304494 SUPT6HQ7KZ85 1726 aaKnown RBP41.86■■■■■ 4.29
CDKN2A-201ENST00000304494 DIP2CQ9Y2E4 1556 aa41.85■■■■■ 4.29
CDKN2A-201ENST00000304494 HNRNPMP52272 730 aaKnown RBP eCLIP41.82■■■■■ 4.29
CDKN2A-201ENST00000304494 NCOA2Q15596 1464 aa41.82■■■■■ 4.29
CDKN2A-201ENST00000304494 REREQ9P2R6 1566 aa41.81■■■■■ 4.28
CDKN2A-201ENST00000304494 MAP3K1Q13233 1512 aa41.81■■■■■ 4.28
CDKN2A-201ENST00000304494 ABCA6Q8N139 1617 aa41.8■■■■■ 4.28
CDKN2A-201ENST00000304494 MLECQ14165 292 aa41.79■■■■■ 4.28
CDKN2A-201ENST00000304494 LRRC9Q6ZRR7 1453 aa41.79■■■■■ 4.28
CDKN2A-201ENST00000304494 RIMS1Q86UR5 1692 aaKnown RBP41.78■■■■■ 4.28
CDKN2A-201ENST00000304494 KIDINS220Q9ULH0 1771 aa41.76■■■■■ 4.27
CDKN2A-201ENST00000304494 SPAG9O60271 1321 aaKnown RBP41.75■■■■■ 4.27
CDKN2A-201ENST00000304494 ZNF644Q9H582 1327 aaPredicted RBP41.69■■■■■ 4.27
CDKN2A-201ENST00000304494 FER1L4A9Z1Z3 1794 aa41.69■■■■■ 4.26
CDKN2A-201ENST00000304494 AGLP35573 1532 aa41.67■■■■■ 4.26
CDKN2A-201ENST00000304494 ATP7AQ04656 1500 aa41.65■■■■■ 4.26
CDKN2A-201ENST00000304494 MBD5Q9P267 1494 aa41.63■■■■■ 4.25
CDKN2A-201ENST00000304494 INO80Q9ULG1 1556 aaPredicted RBP41.63■■■■■ 4.25
CDKN2A-201ENST00000304494 APLP2Q06481 763 aa41.62■■■■■ 4.25
CDKN2A-201ENST00000304494 KANK4Q5T7N3 995 aaPredicted RBP41.62■■■■■ 4.25
CDKN2A-201ENST00000304494 CAMSAP2Q08AD1 1489 aa41.59■■■■■ 4.25
CDKN2A-201ENST00000304494 RSPH4AQ5TD94 716 aa41.53■■■■■ 4.24
CDKN2A-201ENST00000304494 PLPPR3Q6T4P5 718 aa41.53■■■■■ 4.24
CDKN2A-201ENST00000304494 CCDC141Q6ZP82 1450 aa41.5■■■■■ 4.23
CDKN2A-201ENST00000304494 RTEL1-TNFRSF6BF6WH68 1400 aa41.5■■■■■ 4.23
CDKN2A-201ENST00000304494 A2MP01023 1474 aa41.48■■■■■ 4.23
CDKN2A-201ENST00000304494 ESF1Q9H501 851 aaKnown RBP41.46■■■■■ 4.23
CDKN2A-201ENST00000304494 PLXNC1O60486 1568 aa41.46■■■■■ 4.23
CDKN2A-201ENST00000304494 MYOM3Q5VTT5 1437 aa41.44■■■■■ 4.23
CDKN2A-201ENST00000304494 MIA2Q96PC5 1412 aa41.44■■■■■ 4.22
CDKN2A-201ENST00000304494 ADGBQ8N7X0 1667 aa41.43■■■■■ 4.22
CDKN2A-201ENST00000304494 LMTK3Q96Q04 1460 aa41.43■■■■■ 4.22
CDKN2A-201ENST00000304494 ARHGEF5Q12774 1597 aa41.42■■■■■ 4.22
CDKN2A-201ENST00000304494 CNTLNQ9NXG0 1405 aa41.38■■■■■ 4.22
CDKN2A-201ENST00000304494 CEBPAP49715 358 aaPredicted RBP41.36■■■■■ 4.21
CDKN2A-201ENST00000304494 TSPY4P0CV99 314 aa41.34■■■■■ 4.21
CDKN2A-201ENST00000304494 TSPY10P0CW01 314 aa41.34■■■■■ 4.21
CDKN2A-201ENST00000304494 DHX29Q7Z478 1369 aaKnown RBP41.3■■■■■ 4.2
CDKN2A-201ENST00000304494 C3P01024 1663 aa41.27■■■■■ 4.2
CDKN2A-201ENST00000304494 PREX1Q8TCU6 1659 aa41.24■■■■■ 4.19
CDKN2A-201ENST00000304494 GGT6Q6P531 493 aa41.24■■■■■ 4.19
CDKN2A-201ENST00000304494 MROH2AA6NES4 1674 aa41.23■■■■■ 4.19
CDKN2A-201ENST00000304494 PPP6R1Q9UPN7 881 aa41.22■■■■■ 4.19
CDKN2A-201ENST00000304494 MAST1Q9Y2H9 1570 aa41.2■■■■■ 4.19
CDKN2A-201ENST00000304494 HSPA2P54652 639 aa41.18■■■■■ 4.18
CDKN2A-201ENST00000304494 PTPN23Q9H3S7 1636 aa41.17■■■■■ 4.18
CDKN2A-201ENST00000304494 UHRF1BP1Q6BDS2 1440 aa41.17■■■■■ 4.18
CDKN2A-201ENST00000304494 ZMYM3Q14202 1370 aa41.16■■■■■ 4.18
CDKN2A-201ENST00000304494 CLTCQ00610 1675 aaKnown RBP41.14■■■■■ 4.18
CDKN2A-201ENST00000304494 FGD6Q6ZV73 1430 aa41.14■■■■■ 4.18
CDKN2A-201ENST00000304494 SETD1BQ9UPS6 1966 aaKnown RBP41.13■■■■■ 4.17
CDKN2A-201ENST00000304494 KIF3BO15066 747 aa41.12■■■■■ 4.17
CDKN2A-201ENST00000304494 NPATQ14207 1427 aa41.1■■■■■ 4.17
CDKN2A-201ENST00000304494 TCOF1Q13428 1488 aaKnown RBP41.09■■■■■ 4.17
CDKN2A-201ENST00000304494 SHANK2Q9UPX8 1470 aa41.05■■■■■ 4.16
CDKN2A-201ENST00000304494 FAM135AQ9P2D6 1515 aa41.03■■■■■ 4.16
CDKN2A-201ENST00000304494 ABCC5O15440 1437 aa41.02■■■■■ 4.16
CDKN2A-201ENST00000304494 CROCC2H7BZ55 1655 aa41.01■■■■■ 4.16
CDKN2A-201ENST00000304494 DAPK1P53355 1430 aa40.99■■■■■ 4.15
CDKN2A-201ENST00000304494 KDM5DQ9BY66 1539 aa40.98■■■■■ 4.15
CDKN2A-201ENST00000304494 DNMT1P26358 1616 aaKnown RBP40.98■■■■■ 4.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms