RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 NPM1P06748 294 aaKnown RBP eCLIP18.78■□□□□ 0.6
SCN3B-201ENST00000299333 SYAP1Q96A49 352 aaPredicted RBP18.78■□□□□ 0.6
SCN3B-201ENST00000299333 CLSTN1O94985 981 aa18.78■□□□□ 0.6
SCN3B-201ENST00000299333 APBB1O00213 710 aa18.75■□□□□ 0.59
SCN3B-201ENST00000299333 GNL2Q13823 731 aaKnown RBP18.75■□□□□ 0.59
SCN3B-201ENST00000299333 CFAP44Q96MT7 982 aa18.74■□□□□ 0.59
SCN3B-201ENST00000299333 CALD1Q05682 793 aaKnown RBP18.72■□□□□ 0.59
SCN3B-201ENST00000299333 MFAP1P55081 439 aaKnown RBP18.72■□□□□ 0.59
SCN3B-201ENST00000299333 ZNF771Q7L3S4 317 aaPredicted RBP18.71■□□□□ 0.59
SCN3B-201ENST00000299333 FOXD4L1Q9NU39 408 aa18.7■□□□□ 0.58
SCN3B-201ENST00000299333 RCAN3Q9UKA8 241 aa18.69■□□□□ 0.58
SCN3B-201ENST00000299333 TNIKQ9UKE5 1360 aa18.69■□□□□ 0.58
SCN3B-201ENST00000299333 RSF1Q96T23 1441 aaPredicted RBP18.68■□□□□ 0.58
SCN3B-201ENST00000299333 KIAA1211Q6ZU35 1233 aa18.68■□□□□ 0.58
SCN3B-201ENST00000299333 GOLGA2Q08379 1002 aa18.67■□□□□ 0.58
SCN3B-201ENST00000299333 TPM4P67936 248 aa18.67■□□□□ 0.58
SCN3B-201ENST00000299333 HTATSF1O43719 755 aaKnown RBP18.65■□□□□ 0.58
SCN3B-201ENST00000299333 RWDD1Q9H446 243 aaPredicted RBP18.65■□□□□ 0.58
SCN3B-201ENST00000299333 GSE1Q14687 1217 aa18.65■□□□□ 0.58
SCN3B-201ENST00000299333 USP35Q9P2H5 1018 aa18.64■□□□□ 0.57
SCN3B-201ENST00000299333 HAP1P54257 671 aaPredicted RBP18.63■□□□□ 0.57
SCN3B-201ENST00000299333 ITPRIPQ8IWB1 547 aa18.62■□□□□ 0.57
SCN3B-201ENST00000299333 CEP164Q9UPV0 1460 aa18.61■□□□□ 0.57
SCN3B-201ENST00000299333 PDE4CQ08493 712 aa18.61■□□□□ 0.57
SCN3B-201ENST00000299333 HSP90B1P14625 803 aaKnown RBP18.61■□□□□ 0.57
SCN3B-201ENST00000299333 ANO8Q9HCE9 1232 aaPredicted RBP18.61■□□□□ 0.57
SCN3B-201ENST00000299333 NPHP1O15259 732 aa18.6■□□□□ 0.57
SCN3B-201ENST00000299333 TMF1P82094 1093 aa18.6■□□□□ 0.57
SCN3B-201ENST00000299333 POGKQ9P215 609 aa18.59■□□□□ 0.57
SCN3B-201ENST00000299333 NOL8Q76FK4 1167 aaKnown RBP18.59■□□□□ 0.57
SCN3B-201ENST00000299333 SLC4A3P48751 1232 aa18.59■□□□□ 0.57
SCN3B-201ENST00000299333 IPO8O15397 1037 aaKnown RBP18.58■□□□□ 0.56
SCN3B-201ENST00000299333 FOXD4L5Q5VV16 416 aaPredicted RBP18.58■□□□□ 0.56
SCN3B-201ENST00000299333 FOXD4L4Q8WXT5 416 aaPredicted RBP18.58■□□□□ 0.56
SCN3B-201ENST00000299333 KCNH8Q96L42 1107 aa18.58■□□□□ 0.56
SCN3B-201ENST00000299333 ISY1Q9ULR0 285 aaKnown RBP18.57■□□□□ 0.56
SCN3B-201ENST00000299333 HSPA5P11021 654 aaKnown RBP18.57■□□□□ 0.56
SCN3B-201ENST00000299333 FAM13BQ9NYF5 915 aa18.57■□□□□ 0.56
SCN3B-201ENST00000299333 DDX11L8A8MPP1 907 aa18.56■□□□□ 0.56
SCN3B-201ENST00000299333 PHF14O94880 888 aa18.56■□□□□ 0.56
SCN3B-201ENST00000299333 LMOD2Q6P5Q4 547 aa18.56■□□□□ 0.56
SCN3B-201ENST00000299333 WRNQ14191 1432 aaPredicted RBP eCLIP18.55■□□□□ 0.56
SCN3B-201ENST00000299333 PMFBP1Q8TBY8 1022 aa18.55■□□□□ 0.56
SCN3B-201ENST00000299333 CREBRFQ8IUR6 639 aa18.55■□□□□ 0.56
SCN3B-201ENST00000299333 PATL2C9JE40 543 aaKnown RBP18.54■□□□□ 0.56
SCN3B-201ENST00000299333 CSPP1Q1MSJ5 1256 aa18.54■□□□□ 0.56
SCN3B-201ENST00000299333 MORC1Q86VD1 984 aa18.54■□□□□ 0.56
SCN3B-201ENST00000299333 CFDP1Q9UEE9 299 aaPredicted RBP18.53■□□□□ 0.56
SCN3B-201ENST00000299333 CCAR2Q8N163 923 aaKnown RBP18.53■□□□□ 0.56
SCN3B-201ENST00000299333 DCAF11Q8TEB1 546 aa18.53■□□□□ 0.56
SCN3B-201ENST00000299333 TPM3P06753 285 aa18.52■□□□□ 0.56
SCN3B-201ENST00000299333 RB1CC1Q8TDY2 1594 aa18.52■□□□□ 0.55
SCN3B-201ENST00000299333 DDX49Q9Y6V7 483 aaKnown RBP18.51■□□□□ 0.55
SCN3B-201ENST00000299333 PLEKHD1A6NEE1 506 aa18.51■□□□□ 0.55
SCN3B-201ENST00000299333 TAF7LQ5H9L4 462 aa18.51■□□□□ 0.55
SCN3B-201ENST00000299333 KTN1Q86UP2 1357 aaKnown RBP18.5■□□□□ 0.55
SCN3B-201ENST00000299333 SOX12O15370 315 aa18.49■□□□□ 0.55
SCN3B-201ENST00000299333 TRIM6-TRIM34B2RNG4 842 aa18.49■□□□□ 0.55
SCN3B-201ENST00000299333 ZNF592Q92610 1267 aa18.48■□□□□ 0.55
SCN3B-201ENST00000299333 PDE4AP27815 886 aa18.46■□□□□ 0.55
SCN3B-201ENST00000299333 KIF27Q86VH2 1401 aa18.46■□□□□ 0.55
SCN3B-201ENST00000299333 CCDC34Q96HJ3 373 aa18.46■□□□□ 0.55
SCN3B-201ENST00000299333 GPS2Q13227 327 aa18.45■□□□□ 0.54
SCN3B-201ENST00000299333 CLUAP1Q96AJ1 413 aa18.45■□□□□ 0.54
SCN3B-201ENST00000299333 ST18O60284 1047 aa18.45■□□□□ 0.54
SCN3B-201ENST00000299333 RTF1Q92541 710 aaKnown RBP18.45■□□□□ 0.54
SCN3B-201ENST00000299333 CHMP7Q8WUX9 453 aaPredicted RBP18.44■□□□□ 0.54
SCN3B-201ENST00000299333 SKOR2Q2VWA4 1001 aaPredicted RBP18.43■□□□□ 0.54
SCN3B-201ENST00000299333 FOXD4L6Q3SYB3 417 aaPredicted RBP18.43■□□□□ 0.54
SCN3B-201ENST00000299333 FOXD4L3Q6VB84 417 aaPredicted RBP18.43■□□□□ 0.54
SCN3B-201ENST00000299333 PRM3Q9NNZ6 103 aa18.43■□□□□ 0.54
SCN3B-201ENST00000299333 RASSF8Q8NHQ8 419 aa18.42■□□□□ 0.54
SCN3B-201ENST00000299333 SMC4Q9NTJ3 1288 aa18.41■□□□□ 0.54
SCN3B-201ENST00000299333 U2AF1L5P0DN76 240 aaPredicted RBP18.41■□□□□ 0.54
SCN3B-201ENST00000299333 SRPK2P78362 688 aaKnown RBP18.41■□□□□ 0.54
SCN3B-201ENST00000299333 U2AF1Q01081 240 aaKnown RBP eCLIP18.41■□□□□ 0.54
SCN3B-201ENST00000299333 TEX35Q5T0J7 233 aa18.4■□□□□ 0.54
SCN3B-201ENST00000299333 GOLGA6L19H0YKK7 550 aa18.4■□□□□ 0.54
SCN3B-201ENST00000299333 NACADO15069 1562 aa18.4■□□□□ 0.54
SCN3B-201ENST00000299333 FAM161AQ3B820 660 aa18.39■□□□□ 0.54
SCN3B-201ENST00000299333 KIF16BQ96L93 1317 aa18.39■□□□□ 0.54
SCN3B-201ENST00000299333 FAM43AQ8N2R8 423 aa18.39■□□□□ 0.53
SCN3B-201ENST00000299333 FANCIQ9NVI1 1328 aa18.39■□□□□ 0.53
SCN3B-201ENST00000299333 RALBP1Q15311 655 aa18.39■□□□□ 0.53
SCN3B-201ENST00000299333 SF3A1Q15459 793 aaKnown RBP18.39■□□□□ 0.53
SCN3B-201ENST00000299333 PES1O00541 588 aaKnown RBP18.39■□□□□ 0.53
SCN3B-201ENST00000299333 CCNB3Q8WWL7 1395 aa18.39■□□□□ 0.53
SCN3B-201ENST00000299333 SAFB2Q14151 953 aaKnown RBP eCLIP18.38■□□□□ 0.53
SCN3B-201ENST00000299333 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.38■□□□□ 0.53
SCN3B-201ENST00000299333 BECN2A8MW95 431 aa18.37■□□□□ 0.53
SCN3B-201ENST00000299333 CEP89Q96ST8 783 aa18.37■□□□□ 0.53
SCN3B-201ENST00000299333 NOM1Q5C9Z4 860 aaKnown RBP18.36■□□□□ 0.53
SCN3B-201ENST00000299333 BAZ1BQ9UIG0 1483 aaKnown RBP18.34■□□□□ 0.53
SCN3B-201ENST00000299333 GPATCH3Q96I76 525 aa18.34■□□□□ 0.53
SCN3B-201ENST00000299333 CENPJQ9HC77 1338 aaPredicted RBP18.34■□□□□ 0.53
SCN3B-201ENST00000299333 HMMRO75330 724 aa18.34■□□□□ 0.53
SCN3B-201ENST00000299333 CCDC146Q8IYE0 955 aa18.34■□□□□ 0.53
SCN3B-201ENST00000299333 TPD52L1Q16890 204 aaPredicted RBP18.33■□□□□ 0.52
SCN3B-201ENST00000299333 CCDC70Q6NSX1 233 aa18.33■□□□□ 0.52
SCN3B-201ENST00000299333 TSR1Q2NL82 804 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms