RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 SLC4A2P04920 1241 aa14.8□□□□□ -0.04
HMGN1-201ENST00000288344 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
HMGN1-201ENST00000288344 ARAP3Q8WWN8 1544 aa14.79□□□□□ -0.04
HMGN1-201ENST00000288344 KDM6BO15054 1643 aa14.78□□□□□ -0.04
HMGN1-201ENST00000288344 TROQ12816 1431 aaPredicted RBP14.78□□□□□ -0.04
HMGN1-201ENST00000288344 PHLDB1Q86UU1 1377 aa14.78□□□□□ -0.04
HMGN1-201ENST00000288344 CCDC18Q5T9S5 1454 aa14.76□□□□□ -0.05
HMGN1-201ENST00000288344 TTC37Q6PGP7 1564 aa14.75□□□□□ -0.05
HMGN1-201ENST00000288344 ATP1B4Q9UN42 357 aaPredicted RBP14.75□□□□□ -0.05
HMGN1-201ENST00000288344 CDK11AQ9UQ88 783 aaPredicted RBP14.75□□□□□ -0.05
HMGN1-201ENST00000288344 PLCH2O75038 1416 aa14.75□□□□□ -0.05
HMGN1-201ENST00000288344 NEO1Q92859 1461 aa14.75□□□□□ -0.05
HMGN1-201ENST00000288344 KIF14Q15058 1648 aa14.74□□□□□ -0.05
HMGN1-201ENST00000288344 CACNB1Q02641 598 aaPredicted RBP14.7□□□□□ -0.06
HMGN1-201ENST00000288344 C1QBPQ07021 282 aaKnown RBP14.7□□□□□ -0.06
HMGN1-201ENST00000288344 VPS8Q8N3P4 1428 aa14.7□□□□□ -0.06
HMGN1-201ENST00000288344 AKNAQ7Z591 1439 aa14.69□□□□□ -0.06
HMGN1-201ENST00000288344 FANCAO15360 1455 aa14.68□□□□□ -0.06
HMGN1-201ENST00000288344 RAPGEF3O95398 923 aa14.67□□□□□ -0.06
HMGN1-201ENST00000288344 FRMPD1Q5SYB0 1578 aa14.67□□□□□ -0.06
HMGN1-201ENST00000288344 CDC42BPBQ9Y5S2 1711 aa14.66□□□□□ -0.06
HMGN1-201ENST00000288344 EFCAB2Q5VUJ9 269 aa14.65□□□□□ -0.06
HMGN1-201ENST00000288344 MAP3K1Q13233 1512 aa14.64□□□□□ -0.07
HMGN1-201ENST00000288344 GPATCH8Q9UKJ3 1502 aaKnown RBP14.64□□□□□ -0.07
HMGN1-201ENST00000288344 KDM4FA0A1W2PPD8 638 aa14.64□□□□□ -0.07
HMGN1-201ENST00000288344 RICTORQ6R327 1708 aa14.63□□□□□ -0.07
HMGN1-201ENST00000288344 MYO5CQ9NQX4 1742 aa14.63□□□□□ -0.07
HMGN1-201ENST00000288344 U3KPZ7 1027 aaPredicted RBP14.63□□□□□ -0.07
HMGN1-201ENST00000288344 CDC42BPAQ5VT25 1732 aa14.62□□□□□ -0.07
HMGN1-201ENST00000288344 DENND4BO75064 1496 aaPredicted RBP14.61□□□□□ -0.07
HMGN1-201ENST00000288344 ARHGEF12Q9NZN5 1544 aa14.61□□□□□ -0.07
HMGN1-201ENST00000288344 KANK4Q5T7N3 995 aaPredicted RBP14.61□□□□□ -0.07
HMGN1-201ENST00000288344 TIAM1Q13009 1591 aa14.61□□□□□ -0.07
HMGN1-201ENST00000288344 SCAPERQ9BY12 1400 aa14.6□□□□□ -0.07
HMGN1-201ENST00000288344 CFAP74Q9C0B2 1584 aa14.6□□□□□ -0.07
HMGN1-201ENST00000288344 PREX2Q70Z35 1606 aa14.59□□□□□ -0.07
HMGN1-201ENST00000288344 ZMYM4Q5VZL5 1548 aa14.59□□□□□ -0.07
HMGN1-201ENST00000288344 ADGRL1O94910 1474 aa14.58□□□□□ -0.08
HMGN1-201ENST00000288344 LRRC9Q6ZRR7 1453 aa14.57□□□□□ -0.08
HMGN1-201ENST00000288344 MTUS2Q5JR59 1369 aa14.57□□□□□ -0.08
HMGN1-201ENST00000288344 EHBP1L1Q8N3D4 1523 aa14.57□□□□□ -0.08
HMGN1-201ENST00000288344 POGZQ7Z3K3 1410 aa14.57□□□□□ -0.08
HMGN1-201ENST00000288344 AFAP1Q8N556 730 aa14.56□□□□□ -0.08
HMGN1-201ENST00000288344 ARHGAP5Q13017 1502 aa14.55□□□□□ -0.08
HMGN1-201ENST00000288344 MAGI2Q86UL8 1455 aa14.55□□□□□ -0.08
HMGN1-201ENST00000288344 KDM5CP41229 1560 aa14.54□□□□□ -0.08
HMGN1-201ENST00000288344 KIAA1107Q9UPP5 1409 aa14.54□□□□□ -0.08
HMGN1-201ENST00000288344 TRAPPC8Q9Y2L5 1435 aa14.54□□□□□ -0.08
HMGN1-201ENST00000288344 ABCC1P33527 1531 aa14.54□□□□□ -0.08
HMGN1-201ENST00000288344 SAMD9LQ8IVG5 1584 aa14.54□□□□□ -0.08
HMGN1-201ENST00000288344 YEATS2Q9ULM3 1422 aa14.53□□□□□ -0.08
HMGN1-201ENST00000288344 NCOA2Q15596 1464 aa14.53□□□□□ -0.08
HMGN1-201ENST00000288344 ZNF644Q9H582 1327 aaPredicted RBP14.52□□□□□ -0.09
HMGN1-201ENST00000288344 MBD5Q9P267 1494 aa14.51□□□□□ -0.09
HMGN1-201ENST00000288344 MLH3Q9UHC1 1453 aa14.51□□□□□ -0.09
HMGN1-201ENST00000288344 CFDP1Q9UEE9 299 aaPredicted RBP14.51□□□□□ -0.09
HMGN1-201ENST00000288344 SIGLEC1Q9BZZ2 1709 aa14.51□□□□□ -0.09
HMGN1-201ENST00000288344 CCNB3Q8WWL7 1395 aa14.51□□□□□ -0.09
HMGN1-201ENST00000288344 ZNF518AQ6AHZ1 1483 aa14.5□□□□□ -0.09
HMGN1-201ENST00000288344 ARHGEF40Q8TER5 1519 aa14.49□□□□□ -0.09
HMGN1-201ENST00000288344 ITSN2Q9NZM3 1697 aa14.49□□□□□ -0.09
HMGN1-201ENST00000288344 HNRNPMP52272 730 aaKnown RBP eCLIP14.48□□□□□ -0.09
HMGN1-201ENST00000288344 SUPT6HQ7KZ85 1726 aaKnown RBP14.48□□□□□ -0.09
HMGN1-201ENST00000288344 ZFYVE16Q7Z3T8 1539 aa14.46□□□□□ -0.1
HMGN1-201ENST00000288344 ATP10AO60312 1499 aa14.46□□□□□ -0.1
HMGN1-201ENST00000288344 KIDINS220Q9ULH0 1771 aa14.45□□□□□ -0.1
HMGN1-201ENST00000288344 ADAMTSL3P82987 1691 aa14.45□□□□□ -0.1
HMGN1-201ENST00000288344 PLEKHH2Q8IVE3 1493 aa14.45□□□□□ -0.1
HMGN1-201ENST00000288344 MYCNP04198 464 aaPredicted RBP14.44□□□□□ -0.1
HMGN1-201ENST00000288344 ZNF777Q9ULD5 760 aaPredicted RBP14.44□□□□□ -0.1
HMGN1-201ENST00000288344 SYCP2Q9BX26 1530 aa14.44□□□□□ -0.1
HMGN1-201ENST00000288344 REREQ9P2R6 1566 aa14.43□□□□□ -0.1
HMGN1-201ENST00000288344 DIP2CQ9Y2E4 1556 aa14.43□□□□□ -0.1
HMGN1-201ENST00000288344 MIA2Q96PC5 1412 aa14.42□□□□□ -0.1
HMGN1-201ENST00000288344 HECW2Q9P2P5 1572 aa14.42□□□□□ -0.1
HMGN1-201ENST00000288344 BCORL1Q5H9F3 1711 aa14.42□□□□□ -0.1
HMGN1-201ENST00000288344 MYOM3Q5VTT5 1437 aa14.41□□□□□ -0.1
HMGN1-201ENST00000288344 ABCA6Q8N139 1617 aa14.41□□□□□ -0.1
HMGN1-201ENST00000288344 RSPH4AQ5TD94 716 aa14.4□□□□□ -0.1
HMGN1-201ENST00000288344 C9orf84Q5VXU9 1444 aa14.4□□□□□ -0.1
HMGN1-201ENST00000288344 CAMSAP2Q08AD1 1489 aa14.39□□□□□ -0.11
HMGN1-201ENST00000288344 RTEL1-TNFRSF6BF6WH68 1400 aa14.39□□□□□ -0.11
HMGN1-201ENST00000288344 AGLP35573 1532 aa14.38□□□□□ -0.11
HMGN1-201ENST00000288344 SPAG9O60271 1321 aaKnown RBP14.38□□□□□ -0.11
HMGN1-201ENST00000288344 INO80Q9ULG1 1556 aaPredicted RBP14.38□□□□□ -0.11
HMGN1-201ENST00000288344 APLP2Q06481 763 aa14.38□□□□□ -0.11
HMGN1-201ENST00000288344 ARHGEF5Q12774 1597 aa14.37□□□□□ -0.11
HMGN1-201ENST00000288344 ATXN8OSP0DMR3 200 aa14.36□□□□□ -0.11
HMGN1-201ENST00000288344 SAMD1Q6SPF0 538 aaPredicted RBP14.36□□□□□ -0.11
HMGN1-201ENST00000288344 ATP7AQ04656 1500 aa14.35□□□□□ -0.11
HMGN1-201ENST00000288344 TCOF1Q13428 1488 aaKnown RBP14.35□□□□□ -0.11
HMGN1-201ENST00000288344 PLXNC1O60486 1568 aa14.34□□□□□ -0.11
HMGN1-201ENST00000288344 PTPRMP28827 1452 aa14.34□□□□□ -0.11
HMGN1-201ENST00000288344 CCDC141Q6ZP82 1450 aa14.33□□□□□ -0.12
HMGN1-201ENST00000288344 FGD6Q6ZV73 1430 aa14.33□□□□□ -0.12
HMGN1-201ENST00000288344 MADDQ8WXG6 1647 aa14.32□□□□□ -0.12
HMGN1-201ENST00000288344 ARID4BQ4LE39 1312 aaPredicted RBP14.32□□□□□ -0.12
HMGN1-201ENST00000288344 MAST1Q9Y2H9 1570 aa14.31□□□□□ -0.12
HMGN1-201ENST00000288344 ABCC5O15440 1437 aa14.31□□□□□ -0.12
HMGN1-201ENST00000288344 CAPN15O75808 1086 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms