RNA–Protein interactions for RNA: ENST00000279550.11

YBX3-202, Transcript of Y-box binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene YBX3, Length 1,708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-202ENST00000279550 PREX2Q70Z35 1606 aa31.11■■■□□ 2.57
YBX3-202ENST00000279550 RAB3GAP2Q9H2M9 1393 aa31.09■■■□□ 2.57
YBX3-202ENST00000279550 ZNF644Q9H582 1327 aaPredicted RBP31.07■■■□□ 2.56
YBX3-202ENST00000279550 MYO5CQ9NQX4 1742 aa31.06■■■□□ 2.56
YBX3-202ENST00000279550 SETD5Q9C0A6 1442 aa31.06■■■□□ 2.56
YBX3-202ENST00000279550 CDC42BPBQ9Y5S2 1711 aa31.06■■■□□ 2.56
YBX3-202ENST00000279550 CAMSAP2Q08AD1 1489 aa31.06■■■□□ 2.56
YBX3-202ENST00000279550 ABCA9Q8IUA7 1624 aa31.06■■■□□ 2.56
YBX3-202ENST00000279550 ZNF777Q9ULD5 760 aaPredicted RBP31.04■■■□□ 2.56
YBX3-202ENST00000279550 PLCH2O75038 1416 aa31.03■■■□□ 2.56
YBX3-202ENST00000279550 ARHGAP5Q13017 1502 aa31.02■■■□□ 2.56
YBX3-202ENST00000279550 PTPRKQ15262 1439 aa30.98■■■□□ 2.55
YBX3-202ENST00000279550 CLSPNQ9HAW4 1339 aa30.98■■■□□ 2.55
YBX3-202ENST00000279550 ARAP3Q8WWN8 1544 aa30.97■■■□□ 2.55
YBX3-202ENST00000279550 DNAJC5Q9H3Z4 198 aa30.95■■■□□ 2.55
YBX3-202ENST00000279550 SAMD9LQ8IVG5 1584 aa30.95■■■□□ 2.55
YBX3-202ENST00000279550 DNMT1P26358 1616 aaKnown RBP30.94■■■□□ 2.54
YBX3-202ENST00000279550 DAPK1P53355 1430 aa30.93■■■□□ 2.54
YBX3-202ENST00000279550 EFCAB2Q5VUJ9 269 aa30.91■■■□□ 2.54
YBX3-202ENST00000279550 ABCC5O15440 1437 aa30.9■■■□□ 2.54
YBX3-202ENST00000279550 CD109Q6YHK3 1445 aa30.88■■■□□ 2.53
YBX3-202ENST00000279550 PLEKHH2Q8IVE3 1493 aa30.86■■■□□ 2.53
YBX3-202ENST00000279550 FANCAO15360 1455 aa30.85■■■□□ 2.53
YBX3-202ENST00000279550 MBD5Q9P267 1494 aa30.85■■■□□ 2.53
YBX3-202ENST00000279550 GLI2P10070 1586 aa30.85■■■□□ 2.53
YBX3-202ENST00000279550 KIAA1107Q9UPP5 1409 aa30.84■■■□□ 2.53
YBX3-202ENST00000279550 HNRNPMP52272 730 aaKnown RBP eCLIP30.84■■■□□ 2.534e-7■■■■■ 27.2
YBX3-202ENST00000279550 SYCP2Q9BX26 1530 aa30.84■■■□□ 2.53
YBX3-202ENST00000279550 ARHGEF5Q12774 1597 aa30.83■■■□□ 2.53
YBX3-202ENST00000279550 DIP2BQ9P265 1576 aa30.83■■■□□ 2.53
YBX3-202ENST00000279550 CHIC2Q9UKJ5 165 aa30.82■■■□□ 2.52
YBX3-202ENST00000279550 HFM1A2PYH4 1435 aa30.8■■■□□ 2.52
YBX3-202ENST00000279550 CROCC2H7BZ55 1655 aa30.8■■■□□ 2.52
YBX3-202ENST00000279550 ABCC1P33527 1531 aa30.8■■■□□ 2.52
YBX3-202ENST00000279550 MAP3K4Q9Y6R4 1608 aa30.79■■■□□ 2.52
YBX3-202ENST00000279550 RSPH4AQ5TD94 716 aa30.78■■■□□ 2.52
YBX3-202ENST00000279550 AKNAQ7Z591 1439 aa30.78■■■□□ 2.52
YBX3-202ENST00000279550 FAM69CQ0P6D2 419 aa30.78■■■□□ 2.52
YBX3-202ENST00000279550 CCDC141Q6ZP82 1450 aa30.78■■■□□ 2.52
YBX3-202ENST00000279550 ARHGEF12Q9NZN5 1544 aa30.77■■■□□ 2.52
YBX3-202ENST00000279550 ROCK1Q13464 1354 aa30.77■■■□□ 2.52
YBX3-202ENST00000279550 SHANK2Q9UPX8 1470 aa30.76■■■□□ 2.52
YBX3-202ENST00000279550 NAIPQ13075 1403 aa30.76■■■□□ 2.51
YBX3-202ENST00000279550 CFAP74Q9C0B2 1584 aa30.72■■■□□ 2.51
YBX3-202ENST00000279550 C9orf84Q5VXU9 1444 aa30.72■■■□□ 2.51
YBX3-202ENST00000279550 TSPY4P0CV99 314 aa30.72■■■□□ 2.51
YBX3-202ENST00000279550 TSPY10P0CW01 314 aa30.72■■■□□ 2.51
YBX3-202ENST00000279550 RRP7BPQ9NSQ0 103 aa30.72■■■□□ 2.51
YBX3-202ENST00000279550 ADGRL2O95490 1459 aa30.71■■■□□ 2.51
YBX3-202ENST00000279550 ADGRL1O94910 1474 aa30.7■■■□□ 2.51
YBX3-202ENST00000279550 ADGBQ8N7X0 1667 aa30.69■■■□□ 2.5
YBX3-202ENST00000279550 NCOA1Q15788 1441 aa30.68■■■□□ 2.5
YBX3-202ENST00000279550 TRAPPC8Q9Y2L5 1435 aa30.67■■■□□ 2.5
YBX3-202ENST00000279550 GCC2Q8IWJ2 1684 aa30.67■■■□□ 2.5
YBX3-202ENST00000279550 NEO1Q92859 1461 aa30.66■■■□□ 2.5
YBX3-202ENST00000279550 ANKRD30AQ9BXX3 1397 aa30.66■■■□□ 2.5
YBX3-202ENST00000279550 SCAPERQ9BY12 1400 aa30.65■■■□□ 2.5
YBX3-202ENST00000279550 ZNF316A6NFI3 1004 aaPredicted RBP30.64■■■□□ 2.5
YBX3-202ENST00000279550 KIF13AQ9H1H9 1805 aa30.64■■■□□ 2.49
YBX3-202ENST00000279550 MAST1Q9Y2H9 1570 aa30.63■■■□□ 2.49
YBX3-202ENST00000279550 AFAP1Q8N556 730 aa30.59■■■□□ 2.49
YBX3-202ENST00000279550 KDM6BO15054 1643 aa30.59■■■□□ 2.49
YBX3-202ENST00000279550 PPRC1Q5VV67 1664 aaKnown RBP30.56■■■□□ 2.48
YBX3-202ENST00000279550 ZNF518AQ6AHZ1 1483 aa30.54■■■□□ 2.48
YBX3-202ENST00000279550 TEX14Q8IWB6 1497 aa30.54■■■□□ 2.48
YBX3-202ENST00000279550 TSPOAP1O95153 1857 aa30.54■■■□□ 2.48
YBX3-202ENST00000279550 SIN3AQ96ST3 1273 aa30.53■■■□□ 2.48
YBX3-202ENST00000279550 KIF15Q9NS87 1388 aa30.53■■■□□ 2.48
YBX3-202ENST00000279550 SPAG9O60271 1321 aaKnown RBP30.53■■■□□ 2.48
YBX3-202ENST00000279550 PLXNC1O60486 1568 aa30.52■■■□□ 2.48
YBX3-202ENST00000279550 RTEL1-TNFRSF6BF6WH68 1400 aa30.52■■■□□ 2.48
YBX3-202ENST00000279550 POGZQ7Z3K3 1410 aa30.52■■■□□ 2.48
YBX3-202ENST00000279550 ZFYVE16Q7Z3T8 1539 aa30.5■■■□□ 2.47
YBX3-202ENST00000279550 ANKRD50Q9ULJ7 1429 aa30.49■■■□□ 2.47
YBX3-202ENST00000279550 DENND4BO75064 1496 aaPredicted RBP30.48■■■□□ 2.47
YBX3-202ENST00000279550 DIEXFQ68CQ4 756 aaKnown RBP30.48■■■□□ 2.47
YBX3-202ENST00000279550 KDM5CP41229 1560 aa30.47■■■□□ 2.47
YBX3-202ENST00000279550 INO80Q9ULG1 1556 aaPredicted RBP30.47■■■□□ 2.47
YBX3-202ENST00000279550 ATP7AQ04656 1500 aa30.45■■■□□ 2.47
YBX3-202ENST00000279550 NEUROD1Q13562 356 aa30.44■■■□□ 2.46
YBX3-202ENST00000279550 RAPGEF3O95398 923 aa30.42■■■□□ 2.46
YBX3-202ENST00000279550 ACIN1Q9UKV3 1341 aaKnown RBP30.41■■■□□ 2.46
YBX3-202ENST00000279550 DUOX2Q9NRD8 1548 aa30.4■■■□□ 2.46
YBX3-202ENST00000279550 RICTORQ6R327 1708 aa30.39■■■□□ 2.46
YBX3-202ENST00000279550 MLH3Q9UHC1 1453 aa30.38■■■□□ 2.45
YBX3-202ENST00000279550 KIDINS220Q9ULH0 1771 aa30.37■■■□□ 2.45
YBX3-202ENST00000279550 MYT1LQ9UL68 1186 aa30.37■■■□□ 2.45
YBX3-202ENST00000279550 HECW2Q9P2P5 1572 aa30.37■■■□□ 2.45
YBX3-202ENST00000279550 TRIM52Q96A61 297 aa30.36■■■□□ 2.45
YBX3-202ENST00000279550 TRHP20396 242 aaPredicted RBP30.36■■■□□ 2.45
YBX3-202ENST00000279550 FRMPD1Q5SYB0 1578 aa30.34■■■□□ 2.45
YBX3-202ENST00000279550 ERBINQ96RT1 1412 aa30.34■■■□□ 2.45
YBX3-202ENST00000279550 TIMELESSQ9UNS1 1208 aa30.29■■■□□ 2.44
YBX3-202ENST00000279550 ZMYM4Q5VZL5 1548 aa30.27■■■□□ 2.44
YBX3-202ENST00000279550 DHX29Q7Z478 1369 aaKnown RBP30.25■■■□□ 2.43
YBX3-202ENST00000279550 COL17A1Q9UMD9 1497 aaPredicted RBP30.25■■■□□ 2.43
YBX3-202ENST00000279550 MPHOSPH9Q99550 1183 aa30.24■■■□□ 2.43
YBX3-202ENST00000279550 ABCA6Q8N139 1617 aa30.23■■■□□ 2.43
YBX3-202ENST00000279550 PZPP20742 1482 aa30.21■■■□□ 2.43
YBX3-202ENST00000279550 KDM5DQ9BY66 1539 aa30.21■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms