RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 PHLDB1Q86UU1 1377 aa10.24□□□□□ -0.77
CD44-204ENST00000279452 AKNAQ7Z591 1439 aa10.24□□□□□ -0.77
CD44-204ENST00000279452 ADGRL1O94910 1474 aa10.23□□□□□ -0.77
CD44-204ENST00000279452 PREX2Q70Z35 1606 aa10.22□□□□□ -0.77
CD44-204ENST00000279452 RAPGEF3O95398 923 aa10.22□□□□□ -0.77
CD44-204ENST00000279452 MYT1LQ9UL68 1186 aa10.22□□□□□ -0.77
CD44-204ENST00000279452 DENND4BO75064 1496 aaPredicted RBP10.22□□□□□ -0.77
CD44-204ENST00000279452 LRRC9Q6ZRR7 1453 aa10.22□□□□□ -0.77
CD44-204ENST00000279452 ARAP3Q8WWN8 1544 aa10.22□□□□□ -0.77
CD44-204ENST00000279452 SUPT6HQ7KZ85 1726 aaKnown RBP10.21□□□□□ -0.77
CD44-204ENST00000279452 CFDP1Q9UEE9 299 aaPredicted RBP10.21□□□□□ -0.77
CD44-204ENST00000279452 SCAPERQ9BY12 1400 aa10.21□□□□□ -0.78
CD44-204ENST00000279452 NCOA2Q15596 1464 aa10.21□□□□□ -0.78
CD44-204ENST00000279452 KANK4Q5T7N3 995 aaPredicted RBP10.2□□□□□ -0.78
CD44-204ENST00000279452 CDC42BPAQ5VT25 1732 aa10.19□□□□□ -0.78
CD44-204ENST00000279452 ITSN2Q9NZM3 1697 aa10.19□□□□□ -0.78
CD44-204ENST00000279452 MAP3K1Q13233 1512 aa10.19□□□□□ -0.78
CD44-204ENST00000279452 GPATCH8Q9UKJ3 1502 aaKnown RBP10.19□□□□□ -0.78
CD44-204ENST00000279452 CDC42BPBQ9Y5S2 1711 aa10.19□□□□□ -0.78
CD44-204ENST00000279452 FRMPD1Q5SYB0 1578 aa10.18□□□□□ -0.78
CD44-204ENST00000279452 POGZQ7Z3K3 1410 aa10.18□□□□□ -0.78
CD44-204ENST00000279452 ABCC1P33527 1531 aa10.17□□□□□ -0.78
CD44-204ENST00000279452 SAMD9LQ8IVG5 1584 aa10.16□□□□□ -0.78
CD44-204ENST00000279452 SYCP2Q9BX26 1530 aa10.16□□□□□ -0.78
CD44-204ENST00000279452 ZNF518AQ6AHZ1 1483 aa10.16□□□□□ -0.78
CD44-204ENST00000279452 RICTORQ6R327 1708 aa10.15□□□□□ -0.78
CD44-204ENST00000279452 ARID4BQ4LE39 1312 aaPredicted RBP10.14□□□□□ -0.79
CD44-204ENST00000279452 ZFYVE16Q7Z3T8 1539 aa10.14□□□□□ -0.79
CD44-204ENST00000279452 HNRNPMP52272 730 aaKnown RBP eCLIP10.14□□□□□ -0.79
CD44-204ENST00000279452 PPARGC1BQ86YN6 1023 aaKnown RBP10.14□□□□□ -0.79
CD44-204ENST00000279452 AFAP1Q8N556 730 aa10.14□□□□□ -0.79
CD44-204ENST00000279452 PLEKHH2Q8IVE3 1493 aa10.14□□□□□ -0.79
CD44-204ENST00000279452 ZMYM4Q5VZL5 1548 aa10.13□□□□□ -0.79
CD44-204ENST00000279452 ARHGEF40Q8TER5 1519 aa10.13□□□□□ -0.79
CD44-204ENST00000279452 ZNF644Q9H582 1327 aaPredicted RBP10.13□□□□□ -0.79
CD44-204ENST00000279452 TRAPPC8Q9Y2L5 1435 aa10.13□□□□□ -0.79
CD44-204ENST00000279452 ARHGEF12Q9NZN5 1544 aa10.12□□□□□ -0.79
CD44-204ENST00000279452 CAMSAP2Q08AD1 1489 aa10.12□□□□□ -0.79
CD44-204ENST00000279452 MYOM3Q5VTT5 1437 aa10.12□□□□□ -0.79
CD44-204ENST00000279452 YEATS2Q9ULM3 1422 aa10.12□□□□□ -0.79
CD44-204ENST00000279452 HECW2Q9P2P5 1572 aa10.12□□□□□ -0.79
CD44-204ENST00000279452 MAGI2Q86UL8 1455 aa10.1□□□□□ -0.79
CD44-204ENST00000279452 SPAG9O60271 1321 aaKnown RBP10.1□□□□□ -0.79
CD44-204ENST00000279452 KDM5CP41229 1560 aa10.1□□□□□ -0.79
CD44-204ENST00000279452 KIAA1107Q9UPP5 1409 aa10.09□□□□□ -0.79
CD44-204ENST00000279452 MIA2Q96PC5 1412 aa10.08□□□□□ -0.8
CD44-204ENST00000279452 MLECQ14165 292 aa10.08□□□□□ -0.8
CD44-204ENST00000279452 CCDC141Q6ZP82 1450 aa10.08□□□□□ -0.8
CD44-204ENST00000279452 C9orf84Q5VXU9 1444 aa10.07□□□□□ -0.8
CD44-204ENST00000279452 ATP10AO60312 1499 aa10.07□□□□□ -0.8
CD44-204ENST00000279452 MLH3Q9UHC1 1453 aa10.07□□□□□ -0.8
CD44-204ENST00000279452 FAM50AQ14320 339 aaKnown RBP10.07□□□□□ -0.8
CD44-204ENST00000279452 ABCA6Q8N139 1617 aa10.07□□□□□ -0.8
CD44-204ENST00000279452 ATP7AQ04656 1500 aa10.07□□□□□ -0.8
CD44-204ENST00000279452 FGD6Q6ZV73 1430 aa10.07□□□□□ -0.8
CD44-204ENST00000279452 DIP2CQ9Y2E4 1556 aa10.06□□□□□ -0.8
CD44-204ENST00000279452 PTPN23Q9H3S7 1636 aa10.06□□□□□ -0.8
CD44-204ENST00000279452 MBD5Q9P267 1494 aa10.05□□□□□ -0.8
CD44-204ENST00000279452 TSPY4P0CV99 314 aa10.05□□□□□ -0.8
CD44-204ENST00000279452 TSPY10P0CW01 314 aa10.05□□□□□ -0.8
CD44-204ENST00000279452 INO80Q9ULG1 1556 aaPredicted RBP10.05□□□□□ -0.8
CD44-204ENST00000279452 KDM4FA0A1W2PPD8 638 aa10.04□□□□□ -0.8
CD44-204ENST00000279452 PLPPR3Q6T4P5 718 aa10.04□□□□□ -0.8
CD44-204ENST00000279452 ARHGEF5Q12774 1597 aa10.04□□□□□ -0.8
CD44-204ENST00000279452 KIDINS220Q9ULH0 1771 aa10.03□□□□□ -0.8
CD44-204ENST00000279452 RSPH4AQ5TD94 716 aa10.03□□□□□ -0.8
CD44-204ENST00000279452 SIGLEC1Q9BZZ2 1709 aa10.02□□□□□ -0.81
CD44-204ENST00000279452 ESF1Q9H501 851 aaKnown RBP10.01□□□□□ -0.81
CD44-204ENST00000279452 A2MP01023 1474 aa10.01□□□□□ -0.81
CD44-204ENST00000279452 TCOF1Q13428 1488 aaKnown RBP10.01□□□□□ -0.81
CD44-204ENST00000279452 BCORL1Q5H9F3 1711 aa10.01□□□□□ -0.81
CD44-204ENST00000279452 MADDQ8WXG6 1647 aa10□□□□□ -0.81
CD44-204ENST00000279452 RTEL1-TNFRSF6BF6WH68 1400 aa10□□□□□ -0.81
CD44-204ENST00000279452 DAPK1P53355 1430 aa10□□□□□ -0.81
CD44-204ENST00000279452 ITGAEP38570 1179 aa10□□□□□ -0.81
CD44-204ENST00000279452 CHIC2Q9UKJ5 165 aa10□□□□□ -0.81
CD44-204ENST00000279452 REREQ9P2R6 1566 aa10□□□□□ -0.81
CD44-204ENST00000279452 DNMT1P26358 1616 aaKnown RBP9.99□□□□□ -0.81
CD44-204ENST00000279452 CROCC2H7BZ55 1655 aa9.99□□□□□ -0.81
CD44-204ENST00000279452 ADGBQ8N7X0 1667 aa9.99□□□□□ -0.81
CD44-204ENST00000279452 ABCC5O15440 1437 aa9.99□□□□□ -0.81
CD44-204ENST00000279452 RIMS1Q86UR5 1692 aaKnown RBP9.98□□□□□ -0.81
CD44-204ENST00000279452 SHANK2Q9UPX8 1470 aa9.98□□□□□ -0.81
CD44-204ENST00000279452 MAST1Q9Y2H9 1570 aa9.97□□□□□ -0.81
CD44-204ENST00000279452 ADAMTSL3P82987 1691 aa9.97□□□□□ -0.81
CD44-204ENST00000279452 GGT6Q6P531 493 aa9.97□□□□□ -0.81
CD44-204ENST00000279452 RRP7BPQ9NSQ0 103 aa9.97□□□□□ -0.81
CD44-204ENST00000279452 AGLP35573 1532 aa9.97□□□□□ -0.81
CD44-204ENST00000279452 PLXNC1O60486 1568 aa9.97□□□□□ -0.81
CD44-204ENST00000279452 FER1L4A9Z1Z3 1794 aa9.96□□□□□ -0.81
CD44-204ENST00000279452 KIF3BO15066 747 aa9.96□□□□□ -0.82
CD44-204ENST00000279452 DHX29Q7Z478 1369 aaKnown RBP9.96□□□□□ -0.82
CD44-204ENST00000279452 KIF15Q9NS87 1388 aa9.96□□□□□ -0.82
CD44-204ENST00000279452 PTPRMP28827 1452 aa9.96□□□□□ -0.82
CD44-204ENST00000279452 ANKRD30AQ9BXX3 1397 aa9.95□□□□□ -0.82
CD44-204ENST00000279452 DUOX2Q9NRD8 1548 aa9.93□□□□□ -0.82
CD44-204ENST00000279452 RRBP1Q9P2E9 1410 aaKnown RBP9.92□□□□□ -0.82
CD44-204ENST00000279452 ERBINQ96RT1 1412 aa9.91□□□□□ -0.82
CD44-204ENST00000279452 CEBPAP49715 358 aaPredicted RBP9.91□□□□□ -0.82
CD44-204ENST00000279452 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms